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Author: gezelter
Date: Wed Jan 12 22:41:40 2005 UTC (20 years, 6 months ago)
Log Message: 
merging new_design branch into OOPSE-2.0

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Directorytrunk/OOPSE-2.0/make/Makefile.in modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DUFF.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DUFF.hpp added
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/LJ.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/atype.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/atype_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/charge.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/charge_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/dipole.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/dipole_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/eam.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/eam_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/force_globals.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/gb.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/gb_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/lj_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/neighborLists.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/reactionField.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/shapes.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/shapes_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/simParallel.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/simParallel_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/simulation.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/simulation_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/sticky.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/sticky_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/DarkSide/switcheroo.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/EAM.cpp added
Directorytrunk/OOPSE-2.0/src/UseTheForce/EAM.hpp added
Directorytrunk/OOPSE-2.0/src/UseTheForce/EAM_FF.cpp deleted
Directorytrunk/OOPSE-2.0/src/UseTheForce/ForceField.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/ForceField.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/ForceFieldCreator.hpp added
Directorytrunk/OOPSE-2.0/src/UseTheForce/ForceFieldFactory.cpp added
Directorytrunk/OOPSE-2.0/src/UseTheForce/ForceFieldFactory.hpp added
Directorytrunk/OOPSE-2.0/src/UseTheForce/LJFF.cpp deleted
Directorytrunk/OOPSE-2.0/src/UseTheForce/Makefile modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/Shapes_FF.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/doForces.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/doForces_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/fSwitchingFunction.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/mpiComponentPlan.h modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/mpiForceField.c deleted
Directorytrunk/OOPSE-2.0/src/UseTheForce/mpiForceField.h deleted
Directorytrunk/OOPSE-2.0/src/UseTheForce/notifyCutoffs.F90 modified , text changed
Directorytrunk/OOPSE-2.0/src/UseTheForce/notifyCutoffs_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/Makedepend deleted
Directorytrunk/OOPSE-2.0/src/applications/dump2Xyz/Dump2XYZ.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/oopse/oopse.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/quickLate.c deleted
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/BaseLattice.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/BaseLattice.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/Lattice.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/Lattice.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/LatticeCreator.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/LatticeCreator.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/LatticeFactory.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/LatticeFactory.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/MoLocator.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/MoLocator.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/applications/simpleBuilder/simpleBuilder.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/DataStorage.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/DataStorage.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/Exclude.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/Exclude.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/ForceManager.cpp added
Directorytrunk/OOPSE-2.0/src/brains/ForceManager.hpp added
Directorytrunk/OOPSE-2.0/src/brains/Makefile modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/Migrator.hpp added
Directorytrunk/OOPSE-2.0/src/brains/MoleculeCreator.cpp added
Directorytrunk/OOPSE-2.0/src/brains/MoleculeCreator.hpp added
Directorytrunk/OOPSE-2.0/src/brains/Register.cpp added
Directorytrunk/OOPSE-2.0/src/brains/Register.hpp added
Directorytrunk/OOPSE-2.0/src/brains/SimCreator.cpp added
Directorytrunk/OOPSE-2.0/src/brains/SimCreator.hpp added
Directorytrunk/OOPSE-2.0/src/brains/SimInfo.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/SimInfo.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/SimModel.hpp deleted
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Directorytrunk/OOPSE-2.0/src/brains/SimSnapshotManager.cpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/brains/SimState.cpp deleted
Directorytrunk/OOPSE-2.0/src/brains/SimState.hpp deleted
Directorytrunk/OOPSE-2.0/src/brains/SkipList.cpp deleted
Directorytrunk/OOPSE-2.0/src/brains/SkipList.hpp deleted
Directorytrunk/OOPSE-2.0/src/brains/Snapshot.cpp added
Directorytrunk/OOPSE-2.0/src/brains/Snapshot.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/SnapshotManager.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/Stats.cpp added
Directorytrunk/OOPSE-2.0/src/brains/Stats.hpp added
Directorytrunk/OOPSE-2.0/src/brains/Thermo.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/Thermo.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/fSimulation.h modified , text changed
Directorytrunk/OOPSE-2.0/src/brains/mpiSimulation.cpp deleted
Directorytrunk/OOPSE-2.0/src/brains/mpiSimulation.hpp deleted
Directorytrunk/OOPSE-2.0/src/constraints/AbstractClasses.hpp deleted
Directorytrunk/OOPSE-2.0/src/constraints/ConstraintElem.hpp added
Directorytrunk/OOPSE-2.0/src/constraints/ConstraintPair.hpp added
Directorytrunk/OOPSE-2.0/src/constraints/Makefile modified , text changed
Directorytrunk/OOPSE-2.0/src/constraints/Rattle.cpp added
Directorytrunk/OOPSE-2.0/src/constraints/Rattle.hpp added
Directorytrunk/OOPSE-2.0/src/constraints/ZConstraint.cpp deleted
Directorytrunk/OOPSE-2.0/src/constraints/ZconsData.hpp deleted
Directorytrunk/OOPSE-2.0/src/constraints/ZconsStruct.hpp added
Directorytrunk/OOPSE-2.0/src/constraints/ZconstraintForceManager.cpp added
Directorytrunk/OOPSE-2.0/src/constraints/ZconstraintForceManager.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/AbstractClasses.hpp deleted
Directorytrunk/OOPSE-2.0/src/integrators/AllIntegrator.hpp deleted
Directorytrunk/OOPSE-2.0/src/integrators/DLM.cpp added
Directorytrunk/OOPSE-2.0/src/integrators/DLM.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/Integrator.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/integrators/Integrator.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/integrators/IntegratorCreator.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/IntegratorFactory.cpp added
Directorytrunk/OOPSE-2.0/src/integrators/IntegratorFactory.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/Makefile modified , text changed
Directorytrunk/OOPSE-2.0/src/integrators/NPT.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/integrators/NPT.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/NPTf.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/integrators/NPTf.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/NPTi.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/integrators/NPTi.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/NPTxyz.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/integrators/NPTxyz.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/NVE.cpp added
Directorytrunk/OOPSE-2.0/src/integrators/NVE.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/NVT.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/integrators/NVT.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/RotationAlgorithm.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/Velocitizer.cpp added
Directorytrunk/OOPSE-2.0/src/integrators/Velocitizer.hpp added
Directorytrunk/OOPSE-2.0/src/integrators/VelocityVerletIntegrator.cpp added
Directorytrunk/OOPSE-2.0/src/integrators/VelocityVerletIntegrator.hpp added
Directorytrunk/OOPSE-2.0/src/io/AtomTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/AtomTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/BASS_interface.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/io/BASS_interface.h modified , text changed
Directorytrunk/OOPSE-2.0/src/io/BASS_parse.c modified , text changed
Directorytrunk/OOPSE-2.0/src/io/BASS_parse.h modified , text changed
Directorytrunk/OOPSE-2.0/src/io/BendTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/BendTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/BondTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/BondTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/DirectionalAtomTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/DirectionalAtomTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/DumpReader.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/io/DumpReader.hpp added
Directorytrunk/OOPSE-2.0/src/io/DumpWriter.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/io/DumpWriter.hpp added
Directorytrunk/OOPSE-2.0/src/io/EAMAtomTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/EAMAtomTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/ElectrostaticAtomTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/ElectrostaticAtomTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/Globals.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/io/Globals.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/io/InitializeFromFile.cpp deleted
Directorytrunk/OOPSE-2.0/src/io/LennardJonesAtomTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/LennardJonesAtomTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/LinkedAssign.cpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/io/LinkedCommand.cpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/io/Makefile modified , text changed
Directorytrunk/OOPSE-2.0/src/io/SectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/SectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/SectionParserManager.cpp added
Directorytrunk/OOPSE-2.0/src/io/SectionParserManager.hpp added
Directorytrunk/OOPSE-2.0/src/io/StatWriter.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/io/StatWriter.hpp added
Directorytrunk/OOPSE-2.0/src/io/StickyAtomTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/StickyAtomTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/TorsionTypesSectionParser.cpp added
Directorytrunk/OOPSE-2.0/src/io/TorsionTypesSectionParser.hpp added
Directorytrunk/OOPSE-2.0/src/io/ZConsReader.cpp modified , text changed
Directorytrunk/OOPSE-2.0/src/io/ZConsReader.hpp modified , text changed
Directorytrunk/OOPSE-2.0/src/io/ZConsWriter.cpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/io/basic_ifstrstream.hpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/io/make_nodes.c modified , text changed
Directorytrunk/OOPSE-2.0/src/io/make_nodes.h modified , text changed
Directorytrunk/OOPSE-2.0/src/io/mpiBASS.c modified , text changed
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Directorytrunk/OOPSE-2.0/src/io/node_list.h modified , text changed
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Directorytrunk/OOPSE-2.0/src/io/parse_tree.c modified , text changed
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Directorytrunk/OOPSE-2.0/src/math/ChebyshevPolynomials.cpp added
Directorytrunk/OOPSE-2.0/src/math/ChebyshevPolynomials.hpp added
Directorytrunk/OOPSE-2.0/src/math/MatVec3.c modified , text changed
Directorytrunk/OOPSE-2.0/src/math/MatVec3.h modified , text changed
Directorytrunk/OOPSE-2.0/src/math/Polynomial.hpp added
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Directorytrunk/OOPSE-2.0/src/math/RealSphericalHarmonic.cpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/math/SquareMatrix.hpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/math/randomSPRNG.cpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/minimizers/CGFamilyMinimizer.cpp modified , text changed
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Directorytrunk/OOPSE-2.0/src/minimizers/Minimizer.cpp added
Directorytrunk/OOPSE-2.0/src/minimizers/Minimizer.hpp added
Directorytrunk/OOPSE-2.0/src/minimizers/MinimizerCreator.hpp added
Directorytrunk/OOPSE-2.0/src/minimizers/MinimizerFactory.cpp added
Directorytrunk/OOPSE-2.0/src/minimizers/MinimizerFactory.hpp added
Directorytrunk/OOPSE-2.0/src/minimizers/MinimizerParameterSet.cpp added
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Directorytrunk/OOPSE-2.0/src/primitives/Bond.hpp added
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Directorytrunk/OOPSE-2.0/src/primitives/Torsion.hpp added
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Directorytrunk/OOPSE-2.0/src/primitives/UreyBradleyBend.cpp added
Directorytrunk/OOPSE-2.0/src/primitives/UreyBradleyBend.hpp added
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Directorytrunk/OOPSE-2.0/src/types/BondType.hpp added
Directorytrunk/OOPSE-2.0/src/types/CharmmTorsionType.cpp added
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Directorytrunk/OOPSE-2.0/src/types/CubicBendType.hpp added
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Directorytrunk/OOPSE-2.0/src/types/DirectionalAtomType.cpp added
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Directorytrunk/OOPSE-2.0/src/types/FixedBondType.hpp added
Directorytrunk/OOPSE-2.0/src/types/HarmonicBendType.hpp added
Directorytrunk/OOPSE-2.0/src/types/HarmonicBondType.hpp added
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Directorytrunk/OOPSE-2.0/src/types/MorseBondType.hpp added
Directorytrunk/OOPSE-2.0/src/types/OplsTorsionType.hpp added
Directorytrunk/OOPSE-2.0/src/types/PolynomialBendType.hpp added
Directorytrunk/OOPSE-2.0/src/types/PolynomialBondType.hpp added
Directorytrunk/OOPSE-2.0/src/types/PolynomialTorsionType.hpp added
Directorytrunk/OOPSE-2.0/src/types/QuarticBendType.hpp added
Directorytrunk/OOPSE-2.0/src/types/QuarticBondType.hpp added
Directorytrunk/OOPSE-2.0/src/types/QuarticTorsionType.hpp added
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Directorytrunk/OOPSE-2.0/src/types/TorsionType.hpp added
Directorytrunk/OOPSE-2.0/src/types/UreyBradleyBendType.hpp added
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