| 1 | xsun | 3360 | \chapter{\label{chap:mc}SPONTANEOUS CORRUGATION OF DIPOLAR MEMBRANES} | 
| 2 | xsun | 3354 |  | 
| 3 |  |  | \section{Introduction} | 
| 4 |  |  | \label{mc:sec:Int} | 
| 5 |  |  |  | 
| 6 |  |  | The properties of polymeric membranes are known to depend sensitively | 
| 7 |  |  | on the details of the internal interactions between the constituent | 
| 8 |  |  | monomers.  A flexible membrane will always have a competition between | 
| 9 |  |  | the energy of curvature and the in-plane stretching energy and will be | 
| 10 |  |  | able to buckle in certain limits of surface tension and | 
| 11 |  |  | temperature.\cite{Safran94} The buckling can be non-specific and | 
| 12 |  |  | centered at dislocation~\cite{Seung1988} or grain-boundary | 
| 13 |  |  | defects,\cite{Carraro1993} or it can be directional and cause long | 
| 14 |  |  | ``roof-tile'' or tube-like structures to appear in | 
| 15 |  |  | partially-polymerized phospholipid vesicles.\cite{Mutz1991} | 
| 16 |  |  |  | 
| 17 |  |  | One would expect that anisotropic local interactions could lead to | 
| 18 |  |  | interesting properties of the buckled membrane.  We report here on the | 
| 19 |  |  | buckling behavior of a membrane composed of harmonically-bound, but | 
| 20 |  |  | freely-rotating electrostatic dipoles.  The dipoles have strongly | 
| 21 |  |  | anisotropic local interactions and the membrane exhibits coupling | 
| 22 |  |  | between the buckling and the long-range ordering of the dipoles. | 
| 23 |  |  |  | 
| 24 |  |  | Buckling behavior in liquid crystalline and biological membranes is a | 
| 25 |  |  | well-known phenomenon.  Relatively pure phosphatidylcholine (PC) | 
| 26 |  |  | bilayers form a corrugated or ``rippled'' phase ($P_{\beta'}$) which | 
| 27 |  |  | appears as an intermediate phase between the gel ($L_\beta$) and fluid | 
| 28 |  |  | ($L_{\alpha}$) phases.  The $P_{\beta'}$ phase has attracted | 
| 29 | xsun | 3372 | substantial experimental interest over the past 30 | 
| 30 | xsun | 3374 | years,~\cite{Sun96,Katsaras00,Copeland80,Meyer96,Kaasgaard03} and | 
| 31 | xsun | 3372 | there have been a number of theoretical | 
| 32 | xsun | 3361 | approaches~\cite{Marder84,Carlson87,Goldstein88,McCullough90,Lubensky93,Misbah98,Heimburg00,Kubica02,Bannerjee02} | 
| 33 | xsun | 3354 | (and some heroic | 
| 34 |  |  | simulations~\cite{Ayton02,Jiang04,Brannigan04a,deVries05,deJoannis06}) | 
| 35 |  |  | undertaken to try to explain this phase, but to date, none have looked | 
| 36 |  |  | specifically at the contribution of the dipolar character of the lipid | 
| 37 |  |  | head groups towards this corrugation.  Lipid chain interdigitation | 
| 38 |  |  | certainly plays a major role, and the structures of the ripple phase | 
| 39 |  |  | are highly ordered.  The model we investigate here lacks chain | 
| 40 |  |  | interdigitation (as well as the chains themselves!) and will not be | 
| 41 |  |  | detailed enough to rule in favor of (or against) any of these | 
| 42 |  |  | explanations for the $P_{\beta'}$ phase. | 
| 43 |  |  |  | 
| 44 |  |  | Membranes containing electrostatic dipoles can also exhibit the | 
| 45 |  |  | flexoelectric effect,\cite{Todorova2004,Harden2006,Petrov2006} which | 
| 46 |  |  | is the ability of mechanical deformations to result in electrostatic | 
| 47 |  |  | organization of the membrane.  This phenomenon is a curvature-induced | 
| 48 |  |  | membrane polarization which can lead to potential differences across a | 
| 49 |  |  | membrane.  Reverse flexoelectric behavior (in which applied currents | 
| 50 |  |  | effect membrane curvature) has also been observed.  Explanations of | 
| 51 |  |  | the details of these effects have typically utilized membrane | 
| 52 |  |  | polarization perpendicular to the face of the | 
| 53 |  |  | membrane,\cite{Petrov2006} and the effect has been observed in both | 
| 54 |  |  | biological,\cite{Raphael2000} bent-core liquid | 
| 55 |  |  | crystalline,\cite{Harden2006} and polymer-dispersed liquid crystalline | 
| 56 |  |  | membranes.\cite{Todorova2004} | 
| 57 |  |  |  | 
| 58 |  |  | The problem with using atomistic and even coarse-grained approaches to | 
| 59 |  |  | study membrane buckling phenomena is that only a relatively small | 
| 60 |  |  | number of periods of the corrugation (i.e. one or two) can be | 
| 61 |  |  | realistically simulated given current technology.  Also, simulations | 
| 62 |  |  | of lipid bilayers are traditionally carried out with periodic boundary | 
| 63 |  |  | conditions in two or three dimensions and these have the potential to | 
| 64 |  |  | enhance the periodicity of the system at that wavelength.  To avoid | 
| 65 |  |  | this pitfall, we are using a model which allows us to have | 
| 66 |  |  | sufficiently large systems so that we are not causing artificial | 
| 67 |  |  | corrugation through the use of periodic boundary conditions. | 
| 68 |  |  |  | 
| 69 |  |  | The simplest dipolar membrane is one in which the dipoles are located | 
| 70 |  |  | on fixed lattice sites. Ferroelectric states (with long-range dipolar | 
| 71 |  |  | order) can be observed in dipolar systems with non-triangular | 
| 72 |  |  | packings.  However, {\em triangularly}-packed 2-D dipolar systems are | 
| 73 |  |  | inherently frustrated and one would expect a dipolar-disordered phase | 
| 74 |  |  | to be the lowest free energy | 
| 75 |  |  | configuration.\cite{Toulouse1977,Marland1979} Dipolar lattices already | 
| 76 |  |  | have rich phase behavior, but in order to allow the membrane to | 
| 77 |  |  | buckle, a single degree of freedom (translation normal to the membrane | 
| 78 |  |  | face) must be added to each of the dipoles.  It would also be possible | 
| 79 |  |  | to allow complete translational freedom.  This approach | 
| 80 |  |  | is similar in character to a number of elastic Ising models that have | 
| 81 |  |  | been developed to explain interesting mechanical properties in | 
| 82 |  |  | magnetic alloys.\cite{Renard1966,Zhu2005,Zhu2006,Jiang2006} | 
| 83 |  |  |  | 
| 84 |  |  | What we present here is an attempt to find the simplest dipolar model | 
| 85 |  |  | which will exhibit buckling behavior.  We are using a modified XYZ | 
| 86 |  |  | lattice model; details of the model can be found in section | 
| 87 |  |  | \ref{mc:sec:model}, results of Monte Carlo simulations using this model | 
| 88 |  |  | are presented in section | 
| 89 |  |  | \ref{mc:sec:results}, and section \ref{mc:sec:discussion} contains our conclusions. | 
| 90 |  |  |  | 
| 91 |  |  | \section{2-D Dipolar Membrane} | 
| 92 |  |  | \label{mc:sec:model} | 
| 93 |  |  |  | 
| 94 |  |  | The point of developing this model was to arrive at the simplest | 
| 95 |  |  | possible theoretical model which could exhibit spontaneous corrugation | 
| 96 |  |  | of a two-dimensional dipolar medium.  Since molecules in polymerized | 
| 97 |  |  | membranes and in the $P_{\beta'}$ ripple phase have limited | 
| 98 |  |  | translational freedom, we have chosen a lattice to support the dipoles | 
| 99 |  |  | in the x-y plane.  The lattice may be either triangular (lattice | 
| 100 |  |  | constants $a/b = | 
| 101 |  |  | \sqrt{3}$) or distorted.  However, each dipole has 3 degrees of | 
| 102 |  |  | freedom.  They may move freely {\em out} of the x-y plane (along the | 
| 103 |  |  | $z$ axis), and they have complete orientational freedom ($0 <= \theta | 
| 104 |  |  | <= \pi$, $0 <= \phi < 2 | 
| 105 |  |  | \pi$).  This is essentially a modified X-Y-Z model with translational | 
| 106 |  |  | freedom along the z-axis. | 
| 107 |  |  |  | 
| 108 |  |  | The potential energy of the system, | 
| 109 | xsun | 3361 | \begin{equation} | 
| 110 |  |  | \begin{split} | 
| 111 |  |  | V = \sum_i  &\left( \sum_{j>i} \frac{|\mu|^2}{4\pi \epsilon_0 r_{ij}^3} \left[ | 
| 112 | xsun | 3354 | {\mathbf{\hat u}_i} \cdot {\mathbf{\hat u}_j} - | 
| 113 |  |  | 3({\mathbf{\hat u}_i} \cdot {\mathbf{\hat | 
| 114 | xsun | 3361 | r}_{ij}})({\mathbf{\hat u}_j} \cdot {\mathbf{\hat r}_{ij}})\right] \right. \\ | 
| 115 |  |  | & \left. + \sum_{j \in NN_i}^6 \frac{k_r}{2}\left( | 
| 116 | xsun | 3354 | r_{ij}-\sigma \right)^2 \right) | 
| 117 | xsun | 3361 | \end{split} | 
| 118 | xsun | 3354 | \label{mceq:pot} | 
| 119 | xsun | 3361 | \end{equation} | 
| 120 | xsun | 3354 |  | 
| 121 |  |  | In this potential, $\mathbf{\hat u}_i$ is the unit vector pointing | 
| 122 |  |  | along dipole $i$ and $\mathbf{\hat r}_{ij}$ is the unit vector | 
| 123 |  |  | pointing along the inter-dipole vector $\mathbf{r}_{ij}$.  The entire | 
| 124 |  |  | potential is governed by three parameters, the dipolar strength | 
| 125 |  |  | ($\mu$), the harmonic spring constant ($k_r$) and the preferred | 
| 126 |  |  | intermolecular spacing ($\sigma$).  In practice, we set the value of | 
| 127 |  |  | $\sigma$ to the average inter-molecular spacing from the planar | 
| 128 |  |  | lattice, yielding a potential model that has only two parameters for a | 
| 129 |  |  | particular choice of lattice constants $a$ (along the $x$-axis) and | 
| 130 |  |  | $b$ (along the $y$-axis).  We also define a set of reduced parameters | 
| 131 |  |  | based on the length scale ($\sigma$) and the energy of the harmonic | 
| 132 |  |  | potential at a deformation of 2 $\sigma$ ($\epsilon = k_r \sigma^2 / | 
| 133 |  |  | 2$).  Using these two constants, we perform our calculations using | 
| 134 |  |  | reduced distances, ($r^{*} = r / \sigma$), temperatures ($T^{*} = 2 | 
| 135 |  |  | k_B T / k_r \sigma^2$), densities ($\rho^{*} = N \sigma^2 / L_x L_y$), | 
| 136 |  |  | and dipole moments ($\mu^{*} = \mu / \sqrt{4 \pi \epsilon_0 \sigma^5 | 
| 137 |  |  | k_r / 2}$).  It should be noted that the density ($\rho^{*}$) depends | 
| 138 |  |  | only on the mean particle spacing in the $x-y$ plane; the lattice is | 
| 139 |  |  | fully populated. | 
| 140 |  |  |  | 
| 141 |  |  | To investigate the phase behavior of this model, we have performed a | 
| 142 | xsun | 3383 | series of Me\-trop\-o\-lis Monte Carlo simulations of moderately-sized | 
| 143 |  |  | (34.3 $\sigma$ on a side) patches of membrane hosted on both | 
| 144 |  |  | triangular ($\gamma = a/b = \sqrt{3}$) and distorted ($\gamma \neq | 
| 145 |  |  | \sqrt{3}$) lattices.  The linear extent of one edge of the monolayer | 
| 146 |  |  | was $20 a$ and the system was kept roughly square. The average | 
| 147 |  |  | distance that coplanar dipoles were positioned from their six nearest | 
| 148 |  |  | neighbors was 1 $\sigma$ (on both triangular and distorted lattices). | 
| 149 |  |  | Typical system sizes were 1360 dipoles for the triangular lattices and | 
| 150 | xsun | 3354 | 840-2800 dipoles for the distorted lattices.  Two-dimensional periodic | 
| 151 |  |  | boundary conditions were used, and the cutoff for the dipole-dipole | 
| 152 |  |  | interaction was set to 4.3 $\sigma$.  This cutoff is roughly 2.5 times | 
| 153 |  |  | the typical real-space electrostatic cutoff for molecular systems. | 
| 154 |  |  | Since dipole-dipole interactions decay rapidly with distance, and | 
| 155 |  |  | since the intrinsic three-dimensional periodicity of the Ewald sum can | 
| 156 |  |  | give artifacts in 2-d systems, we have chosen not to use it in these | 
| 157 |  |  | calculations.  Although the Ewald sum has been reformulated to handle | 
| 158 |  |  | 2-D systems,\cite{Parry75,Parry76,Heyes77,deLeeuw79,Rhee89} these | 
| 159 |  |  | methods are computationally expensive,\cite{Spohr97,Yeh99} and are not | 
| 160 |  |  | necessary in this case.  All parameters ($T^{*}$, $\mu^{*}$, and | 
| 161 |  |  | $\gamma$) were varied systematically to study the effects of these | 
| 162 | xsun | 3383 | parameters on the formation of ripple-like phases. The error bars in | 
| 163 |  |  | our results are one $\sigma$ on each side of the average values, where | 
| 164 |  |  | $\sigma$ is the standard deviation obtained from repeated observations | 
| 165 |  |  | of many configurations. | 
| 166 | xsun | 3354 |  | 
| 167 |  |  | \section{Results and Analysis} | 
| 168 |  |  | \label{mc:sec:results} | 
| 169 |  |  |  | 
| 170 |  |  | \subsection{Dipolar Ordering and Coexistence Temperatures} | 
| 171 |  |  | The principal method for observing the orientational ordering | 
| 172 | xsun | 3362 | transition in dipolar or liquid crystalline systems is the $P_2$ order | 
| 173 |  |  | parameter (defined as $1.5 \times \lambda_{max}$, where | 
| 174 |  |  | $\lambda_{max}$ is the largest eigenvalue of the matrix, | 
| 175 | xsun | 3354 | \begin{equation} | 
| 176 |  |  | {\mathsf{S}} = \frac{1}{N} \sum_i \left( | 
| 177 |  |  | \begin{array}{ccc} | 
| 178 |  |  | u^{x}_i u^{x}_i-\frac{1}{3} & u^{x}_i u^{y}_i & u^{x}_i u^{z}_i \\ | 
| 179 |  |  | u^{y}_i u^{x}_i  & u^{y}_i u^{y}_i -\frac{1}{3} & u^{y}_i u^{z}_i \\ | 
| 180 |  |  | u^{z}_i u^{x}_i & u^{z}_i u^{y}_i  & u^{z}_i u^{z}_i -\frac{1}{3} | 
| 181 |  |  | \end{array} \right). | 
| 182 |  |  | \label{mceq:opmatrix} | 
| 183 |  |  | \end{equation} | 
| 184 |  |  | Here $u^{\alpha}_i$ is the $\alpha=x,y,z$ component of the unit vector | 
| 185 |  |  | for dipole $i$.  $P_2$ will be $1.0$ for a perfectly-ordered system | 
| 186 |  |  | and near $0$ for a randomized system.  Note that this order parameter | 
| 187 |  |  | is {\em not} equal to the polarization of the system.  For example, | 
| 188 |  |  | the polarization of the perfect anti-ferroelectric system is $0$, but | 
| 189 |  |  | $P_2$ for an anti-ferroelectric system is $1$.  The eigenvector of | 
| 190 |  |  | $\mathsf{S}$ corresponding to the largest eigenvalue is familiar as | 
| 191 |  |  | the director axis, which can be used to determine a privileged dipolar | 
| 192 |  |  | axis for dipole-ordered systems.  The top panel in Fig. \ref{mcfig:phase} | 
| 193 |  |  | shows the values of $P_2$ as a function of temperature for both | 
| 194 |  |  | triangular ($\gamma = 1.732$) and distorted ($\gamma=1.875$) | 
| 195 |  |  | lattices. | 
| 196 |  |  |  | 
| 197 |  |  | \begin{figure} | 
| 198 |  |  | \includegraphics[width=\linewidth]{./figures/mcPhase.pdf} | 
| 199 | xsun | 3383 | \caption[ The $P_2$ dipolar order parameter as | 
| 200 |  |  | a function of temperature and the phase diagram for the dipolar | 
| 201 |  |  | membrane model]{\label{mcfig:phase} Top panel: The $P_2$ dipolar order | 
| 202 |  |  | parameter as a function of temperature for both triangular ($\gamma = | 
| 203 |  |  | 1.732$) and distorted ($\gamma = 1.875$) lattices.  Bottom Panel: The | 
| 204 |  |  | phase diagram for the dipolar membrane model.  The line denotes the | 
| 205 |  |  | division between the dipolar ordered (anti-ferroelectric) and | 
| 206 |  |  | disordered phases.  An enlarged view near the triangular lattice is | 
| 207 |  |  | shown inset.} | 
| 208 | xsun | 3354 | \end{figure} | 
| 209 |  |  |  | 
| 210 |  |  | There is a clear order-disorder transition in evidence from this data. | 
| 211 |  |  | Both the triangular and distorted lattices have dipolar-ordered | 
| 212 | xsun | 3383 | low-temperature phases, and ori\-en\-ta\-tion\-al\-ly-disordered high | 
| 213 | xsun | 3354 | temperature phases.  The coexistence temperature for the triangular | 
| 214 |  |  | lattice is significantly lower than for the distorted lattices, and | 
| 215 |  |  | the bulk polarization is approximately $0$ for both dipolar ordered | 
| 216 |  |  | and disordered phases.  This gives strong evidence that the dipolar | 
| 217 |  |  | ordered phase is anti-ferroelectric.  We have verified that this | 
| 218 |  |  | dipolar ordering transition is not a function of system size by | 
| 219 |  |  | performing identical calculations with systems twice as large.  The | 
| 220 |  |  | transition is equally smooth at all system sizes that were studied. | 
| 221 |  |  | Additionally, we have repeated the Monte Carlo simulations over a wide | 
| 222 |  |  | range of lattice ratios ($\gamma$) to generate a dipolar | 
| 223 | xsun | 3383 | order/disorder phase diagram.  The bottom panel in | 
| 224 |  |  | Fig. \ref{mcfig:phase} shows that the triangular lattice is a | 
| 225 |  |  | low-temperature cusp in the $T^{*}-\gamma$ phase diagram. | 
| 226 | xsun | 3354 |  | 
| 227 |  |  | This phase diagram is remarkable in that it shows an | 
| 228 |  |  | anti-ferroelectric phase near $\gamma=1.732$ where one would expect | 
| 229 |  |  | lattice frustration to result in disordered phases at all | 
| 230 |  |  | temperatures.  Observations of the configurations in this phase show | 
| 231 |  |  | clearly that the system has accomplished dipolar ordering by forming | 
| 232 |  |  | large ripple-like structures.  We have observed anti-ferroelectric | 
| 233 |  |  | ordering in all three of the equivalent directions on the triangular | 
| 234 |  |  | lattice, and the dipoles have been observed to organize perpendicular | 
| 235 |  |  | to the membrane normal (in the plane of the membrane).  It is | 
| 236 |  |  | particularly interesting to note that the ripple-like structures have | 
| 237 |  |  | also been observed to propagate in the three equivalent directions on | 
| 238 |  |  | the lattice, but the {\em direction of ripple propagation is always | 
| 239 |  |  | perpendicular to the dipole director axis}.  A snapshot of a typical | 
| 240 |  |  | anti-ferroelectric rippled structure is shown in | 
| 241 |  |  | Fig. \ref{mcfig:snapshot}. | 
| 242 |  |  |  | 
| 243 |  |  | \begin{figure} | 
| 244 |  |  | \includegraphics[width=\linewidth]{./figures/mcSnapshot.pdf} | 
| 245 | xsun | 3383 | \caption[ Top and Side views of a representative | 
| 246 | xsun | 3354 | configuration for the dipolar ordered phase supported on the | 
| 247 | xsun | 3383 | triangular lattice]{\label{mcfig:snapshot} Top and Side views of a | 
| 248 |  |  | representative configuration for the dipolar ordered phase supported | 
| 249 |  |  | on the triangular lattice. Note the anti-ferroelectric ordering and | 
| 250 |  |  | the long wavelength buckling of the membrane.  Dipolar ordering has | 
| 251 |  |  | been observed in all three equivalent directions on the triangular | 
| 252 |  |  | lattice, and the ripple direction is always perpendicular to the | 
| 253 |  |  | director axis for the dipoles.} | 
| 254 | xsun | 3354 | \end{figure} | 
| 255 |  |  |  | 
| 256 |  |  | Although the snapshot in Fig. \ref{mcfig:snapshot} gives the appearance | 
| 257 |  |  | of three-row stair-like structures, these appear to be transient.  On | 
| 258 |  |  | average, the corrugation of the membrane is a relatively smooth, | 
| 259 |  |  | long-wavelength phenomenon, with occasional steep drops between | 
| 260 |  |  | adjacent lines of anti-aligned dipoles. | 
| 261 |  |  |  | 
| 262 |  |  | The height-dipole correlation function ($C_{\textrm{hd}}(r, \cos | 
| 263 |  |  | \theta)$) makes the connection between dipolar ordering and the wave | 
| 264 |  |  | vector of the ripple even more explicit.  $C_{\textrm{hd}}(r, \cos | 
| 265 |  |  | \theta)$ is an angle-dependent pair distribution function. The angle | 
| 266 |  |  | ($\theta$) is the angle between the intermolecular vector | 
| 267 |  |  | $\vec{r}_{ij}$ and direction of dipole $i$, | 
| 268 |  |  | \begin{equation} | 
| 269 |  |  | C_{\textrm{hd}} = \frac{\langle \frac{1}{n(r)} \sum_{i}\sum_{j>i} | 
| 270 |  |  | h_i \cdot h_j \delta(r - r_{ij}) \delta(\cos \theta_{ij} - | 
| 271 |  |  | \cos \theta)\rangle} {\langle h^2 \rangle} | 
| 272 |  |  | \end{equation} | 
| 273 |  |  | where $\cos \theta_{ij} = \hat{\mu}_{i} \cdot \hat{r}_{ij}$ and | 
| 274 |  |  | $\hat{r}_{ij} = \vec{r}_{ij} / r_{ij}$.  $n(r)$ is the number of | 
| 275 |  |  | dipoles found in a cylindrical shell between $r$ and $r+\delta r$ of | 
| 276 |  |  | the central particle. Fig. \ref{mcfig:CrossCorrelation} shows contours | 
| 277 |  |  | of this correlation function for both anti-ferroelectric, rippled | 
| 278 |  |  | membranes as well as for the dipole-disordered portion of the phase | 
| 279 |  |  | diagram. | 
| 280 |  |  |  | 
| 281 |  |  | \begin{figure} | 
| 282 |  |  | \includegraphics[width=\linewidth]{./figures/mcHdc.pdf} | 
| 283 | xsun | 3383 | \caption[Contours of the height-dipole | 
| 284 |  |  | correlation function]{\label{mcfig:CrossCorrelation} Contours of the | 
| 285 |  |  | height-dipole correlation function as a function of the dot product | 
| 286 |  |  | between the dipole ($\hat{\mu}$) and inter-dipole separation vector | 
| 287 |  |  | ($\hat{r}$) and the distance ($r$) between the dipoles.  Perfect | 
| 288 |  |  | height correlation (contours approaching 1) are present in the ordered | 
| 289 |  |  | phase when the two dipoles are in the same head-to-tail line. | 
| 290 | xsun | 3354 | Anti-correlation (contours below 0) is only seen when the inter-dipole | 
| 291 |  |  | vector is perpendicular to the dipoles.  In the dipole-disordered | 
| 292 |  |  | portion of the phase diagram, there is only weak correlation in the | 
| 293 |  |  | dipole direction and this correlation decays rapidly to zero for | 
| 294 |  |  | intermolecular vectors that are not dipole-aligned.} | 
| 295 |  |  | \end{figure} | 
| 296 |  |  |  | 
| 297 |  |  | The height-dipole correlation function gives a map of how the topology | 
| 298 |  |  | of the membrane surface varies with angular deviation around a given | 
| 299 |  |  | dipole.  The upper panel of Fig. \ref{mcfig:CrossCorrelation} shows that | 
| 300 |  |  | in the anti-ferroelectric phase, the dipole heights are strongly | 
| 301 |  |  | correlated for dipoles in head-to-tail arrangements, and this | 
| 302 |  |  | correlation persists for very long distances (up to 15 $\sigma$).  For | 
| 303 |  |  | portions of the membrane located perpendicular to a given dipole, the | 
| 304 |  |  | membrane height becomes anti-correlated at distances of 10 $\sigma$. | 
| 305 |  |  | The correlation function is relatively smooth; there are no steep | 
| 306 |  |  | jumps or steps, so the stair-like structures in | 
| 307 |  |  | Fig. \ref{mcfig:snapshot} are indeed transient and disappear when | 
| 308 |  |  | averaged over many configurations.  In the dipole-disordered phase, | 
| 309 |  |  | the height-dipole correlation function is relatively flat (and hovers | 
| 310 |  |  | near zero).  The only significant height correlations are for axial | 
| 311 |  |  | dipoles at very short distances ($r \approx | 
| 312 |  |  | \sigma$). | 
| 313 |  |  |  | 
| 314 |  |  | \subsection{Discriminating Ripples from Thermal Undulations} | 
| 315 |  |  |  | 
| 316 |  |  | In order to be sure that the structures we have observed are actually | 
| 317 |  |  | a rippled phase and not simply thermal undulations, we have computed | 
| 318 |  |  | the undulation spectrum, | 
| 319 |  |  | \begin{equation} | 
| 320 |  |  | h(\vec{q}) = A^{-1/2} \int d\vec{r} | 
| 321 |  |  | h(\vec{r}) e^{-i \vec{q}\cdot\vec{r}} | 
| 322 |  |  | \end{equation} | 
| 323 |  |  | where $h(\vec{r})$ is the height of the membrane at location $\vec{r} | 
| 324 |  |  | = (x,y)$.~\cite{Safran94,Seifert97} In simple (and more complicated) | 
| 325 |  |  | elastic continuum models, it can shown that in the $NVT$ ensemble, the | 
| 326 |  |  | absolute value of the undulation spectrum can be written, | 
| 327 |  |  | \begin{equation} | 
| 328 |  |  | \langle | h(q) |^2 \rangle_{NVT} = \frac{k_B T}{k_c q^4 + | 
| 329 |  |  | \gamma q^2}, | 
| 330 |  |  | \label{mceq:fit} | 
| 331 |  |  | \end{equation} | 
| 332 |  |  | where $k_c$ is the bending modulus for the membrane, and $\gamma$ is | 
| 333 |  |  | the mechanical surface tension.~\cite{Safran94} The systems studied in | 
| 334 |  |  | this paper have essentially zero bending moduli ($k_c$) and relatively | 
| 335 |  |  | large mechanical surface tensions ($\gamma$), so a much simpler form | 
| 336 |  |  | can be written, | 
| 337 |  |  | \begin{equation} | 
| 338 | xsun | 3361 | \langle | h(q) |^2 \rangle_{NVT} = \frac{k_B T}{\gamma q^2}. | 
| 339 | xsun | 3354 | \label{mceq:fit2} | 
| 340 |  |  | \end{equation} | 
| 341 |  |  |  | 
| 342 |  |  | The undulation spectrum is computed by superimposing a rectangular | 
| 343 |  |  | grid on top of the membrane, and by assigning height ($h(\vec{r})$) | 
| 344 |  |  | values to the grid from the average of all dipoles that fall within a | 
| 345 |  |  | given $\vec{r}+d\vec{r}$ grid area.  Empty grid pixels are assigned | 
| 346 |  |  | height values by interpolation from the nearest neighbor pixels.  A | 
| 347 |  |  | standard 2-d Fourier transform is then used to obtain $\langle | | 
| 348 |  |  | h(q)|^2 \rangle$.  Alternatively, since the dipoles sit on a Bravais | 
| 349 |  |  | lattice, one could use the heights of the lattice points themselves as | 
| 350 |  |  | the grid for the Fourier transform (without interpolating to a square | 
| 351 |  |  | grid).  However, if lateral translational freedom is added to this | 
| 352 |  |  | model (a likely extension), an interpolated grid method for computing | 
| 353 |  |  | undulation spectra will be required. | 
| 354 |  |  |  | 
| 355 |  |  | As mentioned above, the best fits to our undulation spectra are | 
| 356 |  |  | obtained by setting the value of $k_c$ to 0.  In Fig. \ref{mcfig:fit} we | 
| 357 |  |  | show typical undulation spectra for two different regions of the phase | 
| 358 |  |  | diagram along with their fits from the Landau free energy approach | 
| 359 |  |  | (Eq. \ref{mceq:fit2}).  In the high-temperature disordered phase, the | 
| 360 |  |  | Landau fits can be nearly perfect, and from these fits we can estimate | 
| 361 |  |  | the tension in the surface.  In reduced units, typical values of | 
| 362 |  |  | $\gamma^{*} = \gamma / \epsilon = 2500$ are obtained for the | 
| 363 |  |  | disordered phase ($\gamma^{*} = 2551.7$ in the top panel of | 
| 364 |  |  | Fig. \ref{mcfig:fit}). | 
| 365 |  |  |  | 
| 366 |  |  | Typical values of $\gamma^{*}$ in the dipolar-ordered phase are much | 
| 367 |  |  | higher than in the dipolar-disordered phase ($\gamma^{*} = 73,538$ in | 
| 368 |  |  | the lower panel of Fig. \ref{mcfig:fit}).  For the dipolar-ordered | 
| 369 |  |  | triangular lattice near the coexistence temperature, we also observe | 
| 370 |  |  | long wavelength undulations that are far outliers to the fits.  That | 
| 371 |  |  | is, the Landau free energy fits are well within error bars for most of | 
| 372 |  |  | the other points, but can be off by {\em orders of magnitude} for a | 
| 373 |  |  | few low frequency components. | 
| 374 |  |  |  | 
| 375 |  |  | We interpret these outliers as evidence that these low frequency modes | 
| 376 |  |  | are {\em non-thermal undulations}.  We take this as evidence that we | 
| 377 |  |  | are actually seeing a rippled phase developing in this model system. | 
| 378 |  |  |  | 
| 379 |  |  | \begin{figure} | 
| 380 |  |  | \includegraphics[width=\linewidth]{./figures/mcLogFit.pdf} | 
| 381 | xsun | 3383 | \caption[Evidence that the observed ripples are {\em not} thermal | 
| 382 |  |  | undulations]{\label{mcfig:fit} Evidence that the observed ripples are | 
| 383 |  |  | {\em not} thermal undulations is obtained from the 2-d Fourier | 
| 384 |  |  | transform $\langle |h^{*}(\vec{q})|^2 \rangle$ of the height profile | 
| 385 |  |  | ($\langle h^{*}(x,y) \rangle$). Rippled samples show low-wavelength | 
| 386 |  |  | peaks that are outliers on the Landau free energy fits by an order of | 
| 387 |  |  | magnitude.  Samples exhibiting only thermal undulations fit | 
| 388 |  |  | Eq. \ref{mceq:fit} remarkably well.} | 
| 389 | xsun | 3354 | \end{figure} | 
| 390 |  |  |  | 
| 391 |  |  | \subsection{Effects of Potential Parameters on Amplitude and Wavelength} | 
| 392 |  |  |  | 
| 393 |  |  | We have used two different methods to estimate the amplitude and | 
| 394 |  |  | periodicity of the ripples.  The first method requires projection of | 
| 395 |  |  | the ripples onto a one dimensional rippling axis. Since the rippling | 
| 396 |  |  | is always perpendicular to the dipole director axis, we can define a | 
| 397 |  |  | ripple vector as follows.  The largest eigenvector, $s_1$, of the | 
| 398 |  |  | $\mathsf{S}$ matrix in Eq. \ref{mceq:opmatrix} is projected onto a | 
| 399 |  |  | planar director axis, | 
| 400 |  |  | \begin{equation} | 
| 401 |  |  | \vec{d} = \left(\begin{array}{c} | 
| 402 |  |  | \vec{s}_1 \cdot \hat{i} \\ | 
| 403 |  |  | \vec{s}_1 \cdot \hat{j} \\ | 
| 404 |  |  | 0 | 
| 405 |  |  | \end{array} \right). | 
| 406 |  |  | \end{equation} | 
| 407 |  |  | ($\hat{i}$, $\hat{j}$ and $\hat{k}$ are unit vectors along the $x$, | 
| 408 |  |  | $y$, and $z$ axes, respectively.)  The rippling axis is in the plane of | 
| 409 |  |  | the membrane and is perpendicular to the planar director axis, | 
| 410 |  |  | \begin{equation} | 
| 411 |  |  | \vec{q}_{\mathrm{rip}} = \vec{d} \times \hat{k} | 
| 412 |  |  | \end{equation} | 
| 413 |  |  | We can then find the height profile of the membrane along the ripple | 
| 414 |  |  | axis by projecting heights of the dipoles to obtain a one-dimensional | 
| 415 |  |  | height profile, $h(q_{\mathrm{rip}})$. Ripple wavelengths can be | 
| 416 |  |  | estimated from the largest non-thermal low-frequency component in the | 
| 417 |  |  | Fourier transform of $h(q_{\mathrm{rip}})$.  Amplitudes can be | 
| 418 |  |  | estimated by measuring peak-to-trough distances in | 
| 419 |  |  | $h(q_{\mathrm{rip}})$ itself. | 
| 420 |  |  |  | 
| 421 |  |  | A second, more accurate, and simpler method for estimating ripple | 
| 422 |  |  | shape is to extract the wavelength and height information directly | 
| 423 |  |  | from the largest non-thermal peak in the undulation spectrum.  For | 
| 424 |  |  | large-amplitude ripples, the two methods give similar results.  The | 
| 425 |  |  | one-dimensional projection method is more prone to noise (particularly | 
| 426 |  |  | in the amplitude estimates for the distorted lattices).  We report | 
| 427 |  |  | amplitudes and wavelengths taken directly from the undulation spectrum | 
| 428 |  |  | below. | 
| 429 |  |  |  | 
| 430 |  |  | In the triangular lattice ($\gamma = \sqrt{3}$), the rippling is | 
| 431 |  |  | observed for temperatures ($T^{*}$) from $61-122$.  The wavelength of | 
| 432 |  |  | the ripples is remarkably stable at 21.4~$\sigma$ for all but the | 
| 433 |  |  | temperatures closest to the order-disorder transition.  At $T^{*} = | 
| 434 |  |  | 122$, the wavelength drops to 17.1~$\sigma$. | 
| 435 |  |  |  | 
| 436 |  |  | The dependence of the amplitude on temperature is shown in the top | 
| 437 |  |  | panel of Fig. \ref{mcfig:Amplitude}.  The rippled structures shrink | 
| 438 |  |  | smoothly as the temperature rises towards the order-disorder | 
| 439 |  |  | transition.  The wavelengths and amplitudes we observe are | 
| 440 |  |  | surprisingly close to the $\Lambda / 2$ phase observed by Kaasgaard | 
| 441 |  |  | {\it et al.} in their work on PC-based lipids.\cite{Kaasgaard03} | 
| 442 |  |  | However, this is coincidental agreement based on a choice of 7~\AA~as | 
| 443 |  |  | the mean spacing between lipids. | 
| 444 |  |  |  | 
| 445 |  |  | \begin{figure} | 
| 446 |  |  | \includegraphics[width=\linewidth]{./figures/mcProperties_sq.pdf} | 
| 447 | xsun | 3383 | \caption[ The amplitude $A^{*}$ of the ripples | 
| 448 |  |  | vs. temperature and dipole strength | 
| 449 |  |  | ($\mu^{*}$)]{\label{mcfig:Amplitude} a) The amplitude $A^{*}$ of the | 
| 450 |  |  | ripples vs. temperature for a triangular lattice. b) The amplitude | 
| 451 |  |  | $A^{*}$ of the ripples vs. dipole strength ($\mu^{*}$) for both the | 
| 452 |  |  | triangular lattice (circles) and distorted lattice (squares).  The | 
| 453 |  |  | reduced temperatures were kept fixed at $T^{*} = 94$ for the | 
| 454 |  |  | triangular lattice and $T^{*} = 106$ for the distorted lattice | 
| 455 |  |  | (approximately 2/3 of the order-disorder transition temperature for | 
| 456 |  |  | each lattice).} | 
| 457 | xsun | 3354 | \end{figure} | 
| 458 |  |  |  | 
| 459 |  |  | The ripples can be made to disappear by increasing the internal | 
| 460 |  |  | elastic tension (i.e. by increasing $k_r$ or equivalently, reducing | 
| 461 |  |  | the dipole moment).  The amplitude of the ripples depends critically | 
| 462 |  |  | on the strength of the dipole moments ($\mu^{*}$) in Eq. \ref{mceq:pot}. | 
| 463 |  |  | If the dipoles are weakened substantially (below $\mu^{*}$ = 20) at a | 
| 464 |  |  | fixed temperature of 94, the membrane loses dipolar ordering | 
| 465 |  |  | and the ripple structures. The ripples reach a peak amplitude of | 
| 466 |  |  | 3.7~$\sigma$ at a dipolar strength of 25.  We show the dependence | 
| 467 |  |  | of ripple amplitude on the dipolar strength in | 
| 468 |  |  | Fig. \ref{mcfig:Amplitude}. | 
| 469 |  |  |  | 
| 470 |  |  | \subsection{Distorted lattices} | 
| 471 |  |  |  | 
| 472 |  |  | We have also investigated the effect of the lattice geometry by | 
| 473 |  |  | changing the ratio of lattice constants ($\gamma$) while keeping the | 
| 474 |  |  | average nearest-neighbor spacing constant. The anti-ferroelectric state | 
| 475 |  |  | is accessible for all $\gamma$ values we have used, although the | 
| 476 |  |  | distorted triangular lattices prefer a particular director axis due to | 
| 477 |  |  | the anisotropy of the lattice. | 
| 478 |  |  |  | 
| 479 |  |  | Our observation of rippling behavior was not limited to the triangular | 
| 480 |  |  | lattices.  In distorted lattices the anti-ferroelectric phase can | 
| 481 |  |  | develop nearly instantaneously in the Monte Carlo simulations, and | 
| 482 |  |  | these dipolar-ordered phases tend to be remarkably flat.  Whenever | 
| 483 |  |  | rippling has been observed in these distorted lattices | 
| 484 |  |  | (e.g. $\gamma = 1.875$), we see relatively short ripple wavelengths | 
| 485 |  |  | (14 $\sigma$) and amplitudes of 2.4~$\sigma$.  These ripples are | 
| 486 |  |  | weakly dependent on dipolar strength (see Fig. \ref{mcfig:Amplitude}), | 
| 487 |  |  | although below a dipolar strength of $\mu^{*} = 20$, the membrane | 
| 488 |  |  | loses dipolar ordering and displays only thermal undulations. | 
| 489 |  |  |  | 
| 490 |  |  | The ripple phase does {\em not} appear at all values of $\gamma$.  We | 
| 491 |  |  | have only observed non-thermal undulations in the range $1.625 < | 
| 492 |  |  | \gamma < 1.875$.  Outside this range, the order-disorder transition in | 
| 493 |  |  | the dipoles remains, but the ordered dipolar phase has only thermal | 
| 494 |  |  | undulations.  This is one of our strongest pieces of evidence that | 
| 495 |  |  | rippling is a symmetry-breaking phenomenon for triangular and | 
| 496 |  |  | nearly-triangular lattices. | 
| 497 |  |  |  | 
| 498 |  |  | \subsection{Effects of System Size} | 
| 499 |  |  | To evaluate the effect of finite system size, we have performed a | 
| 500 |  |  | series of simulations on the triangular lattice at a reduced | 
| 501 |  |  | temperature of 122, which is just below the order-disorder transition | 
| 502 |  |  | temperature ($T^{*} = 139$).  These conditions are in the | 
| 503 |  |  | dipole-ordered and rippled portion of the phase diagram.  These are | 
| 504 |  |  | also the conditions that should be most susceptible to system size | 
| 505 |  |  | effects. | 
| 506 |  |  |  | 
| 507 |  |  | \begin{figure} | 
| 508 |  |  | \includegraphics[width=\linewidth]{./figures/mcSystemSize.pdf} | 
| 509 | xsun | 3383 | \caption[The ripple wavelength and amplitude as a function of system | 
| 510 |  |  | size]{\label{mcfig:systemsize} The ripple wavelength (top) and | 
| 511 | xsun | 3354 | amplitude (bottom) as a function of system size for a triangular | 
| 512 |  |  | lattice ($\gamma=1.732$) at $T^{*} = 122$.} | 
| 513 |  |  | \end{figure} | 
| 514 |  |  |  | 
| 515 |  |  | There is substantial dependence on system size for small (less than | 
| 516 |  |  | 29~$\sigma$) periodic boxes.  Notably, there are resonances apparent | 
| 517 |  |  | in the ripple amplitudes at box lengths of 17.3 and 29.5 $\sigma$. | 
| 518 |  |  | For larger systems, the behavior of the ripples appears to have | 
| 519 |  |  | stabilized and is on a trend to slightly smaller amplitudes (and | 
| 520 |  |  | slightly longer wavelengths) than were observed from the 34.3 $\sigma$ | 
| 521 |  |  | box sizes that were used for most of the calculations. | 
| 522 |  |  |  | 
| 523 |  |  | It is interesting to note that system sizes which are multiples of the | 
| 524 |  |  | default ripple wavelength can enhance the amplitude of the observed | 
| 525 |  |  | ripples, but appears to have only a minor effect on the observed | 
| 526 |  |  | wavelength.  It would, of course, be better to use system sizes that | 
| 527 |  |  | were many multiples of the ripple wavelength to be sure that the | 
| 528 |  |  | periodic box is not driving the phenomenon, but at the largest system | 
| 529 |  |  | size studied (70 $\sigma$ $\times$ 70 $\sigma$), the number of dipoles | 
| 530 |  |  | (5440) made long Monte Carlo simulations prohibitively expensive. | 
| 531 |  |  |  | 
| 532 |  |  | \section{Discussion} | 
| 533 |  |  | \label{mc:sec:discussion} | 
| 534 |  |  |  | 
| 535 |  |  | We have been able to show that a simple dipolar lattice model which | 
| 536 |  |  | contains only molecular packing (from the lattice), anisotropy (in the | 
| 537 |  |  | form of electrostatic dipoles) and a weak elastic tension (in the form | 
| 538 |  |  | of a nearest-neighbor harmonic potential) is capable of exhibiting | 
| 539 |  |  | stable long-wavelength non-thermal surface corrugations.  The best | 
| 540 |  |  | explanation for this behavior is that the ability of the dipoles to | 
| 541 |  |  | translate out of the plane of the membrane is enough to break the | 
| 542 |  |  | symmetry of the triangular lattice and allow the energetic benefit | 
| 543 |  |  | from the formation of a bulk anti-ferroelectric phase.  Were the weak | 
| 544 |  |  | elastic tension absent from our model, it would be possible for the | 
| 545 |  |  | entire lattice to ``tilt'' using $z$-translation.  Tilting the lattice | 
| 546 |  |  | in this way would yield an effectively non-triangular lattice which | 
| 547 |  |  | would avoid dipolar frustration altogether.  With the elastic tension | 
| 548 |  |  | in place, bulk tilt causes a large strain, and the least costly way to | 
| 549 |  |  | release this strain is between two rows of anti-aligned dipoles. | 
| 550 |  |  | These ``breaks'' will result in rippled or sawtooth patterns in the | 
| 551 |  |  | membrane, and allow small stripes of membrane to form | 
| 552 |  |  | anti-ferroelectric regions that are tilted relative to the averaged | 
| 553 |  |  | membrane normal. | 
| 554 |  |  |  | 
| 555 |  |  | Although the dipole-dipole interaction is the major driving force for | 
| 556 |  |  | the long range orientational ordered state, the formation of the | 
| 557 |  |  | stable, smooth ripples is a result of the competition between the | 
| 558 |  |  | elastic tension and the dipole-dipole interactions.  This statement is | 
| 559 |  |  | supported by the variation in $\mu^{*}$.  Substantially weaker dipoles | 
| 560 |  |  | relative to the surface tension can cause the corrugated phase to | 
| 561 |  |  | disappear. | 
| 562 |  |  |  | 
| 563 |  |  | The packing of the dipoles into a nearly-triangular lattice is clearly | 
| 564 |  |  | an important piece of the puzzle.  The dipolar head groups of lipid | 
| 565 |  |  | molecules are sterically (as well as electrostatically) anisotropic, | 
| 566 |  |  | and would not pack in triangular arrangements without the steric | 
| 567 |  |  | interference of adjacent molecular bodies.  Since we only see rippled | 
| 568 |  |  | phases in the neighborhood of $\gamma=\sqrt{3}$, this implies that | 
| 569 |  |  | even if this dipolar mechanism is the correct explanation for the | 
| 570 |  |  | ripple phase in realistic bilayers, there would still be a role played | 
| 571 |  |  | by the lipid chains in the in-plane organization of the triangularly | 
| 572 |  |  | ordered phases which could support ripples.  The present model is | 
| 573 |  |  | certainly not detailed enough to answer exactly what drives the | 
| 574 |  |  | formation of the $P_{\beta'}$ phase in real lipids, but suggests some | 
| 575 |  |  | avenues for further experiments. | 
| 576 |  |  |  | 
| 577 |  |  | The most important prediction we can make using the results from this | 
| 578 |  |  | simple model is that if dipolar ordering is driving the surface | 
| 579 |  |  | corrugation, the wave vectors for the ripples should always found to | 
| 580 |  |  | be {\it perpendicular} to the dipole director axis.  This prediction | 
| 581 |  |  | should suggest experimental designs which test whether this is really | 
| 582 |  |  | true in the phosphatidylcholine $P_{\beta'}$ phases.  The dipole | 
| 583 |  |  | director axis should also be easily computable for the all-atom and | 
| 584 |  |  | coarse-grained simulations that have been published in the literature. | 
| 585 |  |  |  | 
| 586 |  |  | Our other observation about the ripple and dipolar directionality is | 
| 587 |  |  | that the dipole director axis can be found to be parallel to any of | 
| 588 |  |  | the three equivalent lattice vectors in the triangular lattice. | 
| 589 |  |  | Defects in the ordering of the dipoles can cause the dipole director | 
| 590 |  |  | (and consequently the surface corrugation) of small regions to be | 
| 591 |  |  | rotated relative to each other by 120$^{\circ}$.  This is a similar | 
| 592 |  |  | behavior to the domain rotation seen in the AFM studies of Kaasgaard | 
| 593 |  |  | {\it et al.}\cite{Kaasgaard03} | 
| 594 |  |  |  | 
| 595 |  |  | Although our model is simple, it exhibits some rich and unexpected | 
| 596 |  |  | behaviors.  It would clearly be a closer approximation to the reality | 
| 597 |  |  | if we allowed greater translational freedom to the dipoles and | 
| 598 |  |  | replaced the somewhat artificial lattice packing and the harmonic | 
| 599 |  |  | elastic tension with more realistic molecular modeling potentials. | 
| 600 |  |  | What we have done is to present a simple model which exhibits bulk | 
| 601 |  |  | non-thermal corrugation, and our explanation of this rippling | 
| 602 |  |  | phenomenon will help us design more accurate molecular models for | 
| 603 |  |  | corrugated membranes and experiments to test whether rippling is | 
| 604 |  |  | dipole-driven or not. |