| 1 |
tim |
2685 |
\documentclass[nosummary,dvips,noindentfirst]{ndthesis} |
| 2 |
|
|
\usepackage{graphicx} |
| 3 |
|
|
\usepackage{psfrag} |
| 4 |
|
|
\usepackage{amsmath} |
| 5 |
|
|
\usepackage{amssymb} |
| 6 |
|
|
\usepackage{color} |
| 7 |
|
|
\usepackage{listings} |
| 8 |
tim |
2730 |
%\usepackage from oopseDoc.tex |
| 9 |
|
|
\usepackage{times} |
| 10 |
|
|
\usepackage{setspace} |
| 11 |
|
|
\usepackage{tabularx} |
| 12 |
|
|
\usepackage{longtable} |
| 13 |
tim |
2834 |
\lstset{language=C++,frame=TB,basicstyle=\footnotesize, % |
| 14 |
tim |
2830 |
captionpos=b, % |
| 15 |
tim |
2836 |
xleftmargin=0.1in,xrightmargin=0.1in, |
| 16 |
tim |
2834 |
keywordstyle=\footnotesize, breaklines=true, |
| 17 |
tim |
2830 |
abovecaptionskip=0.5cm, belowcaptionskip=0.5cm |
| 18 |
|
|
} |
| 19 |
tim |
2685 |
\includeonly{preview} |
| 20 |
|
|
|
| 21 |
|
|
\begin{document} |
| 22 |
tim |
2805 |
|
| 23 |
|
|
\newcolumntype{A}{p{1.5in}} |
| 24 |
|
|
\newcolumntype{B}{p{0.75in}} |
| 25 |
|
|
\newcolumntype{C}{p{1.5in}} |
| 26 |
|
|
\newcolumntype{D}{p{2in}} |
| 27 |
|
|
|
| 28 |
|
|
\newcolumntype{E}{p{0.5in}} |
| 29 |
tim |
2810 |
\newcolumntype{F}{p{1.5in}} |
| 30 |
|
|
\newcolumntype{G}{p{3.25in}} |
| 31 |
tim |
2805 |
|
| 32 |
|
|
\newcolumntype{H}{p{0.75in}} |
| 33 |
|
|
\newcolumntype{I}{p{5in}} |
| 34 |
|
|
|
| 35 |
tim |
2830 |
\renewcommand{\lstlistlistingname}{LISTS} |
| 36 |
|
|
\renewcommand{\lstlistingname}{List} |
| 37 |
tim |
2685 |
\frontmatter |
| 38 |
|
|
\work{Dissertation} % Change to ``Thesis'' for Master's thesis |
| 39 |
|
|
\title{MOLECULAR DYNAMICS SIMULATIONS OF PHOSPHOLIPID BILAYERS AND LIQUID CRYSTALS} |
| 40 |
|
|
\author{Teng Lin} |
| 41 |
|
|
\degprior{B.Sc.} % All previously earned degrees |
| 42 |
|
|
\degaward{Doctor of Philosophy} % What this paper is for |
| 43 |
|
|
\advisor{J. Daniel Gezelter} % supervisor/director/advisor |
| 44 |
|
|
%% \advisorB{} % second supervisor/director/advisor (if present) |
| 45 |
|
|
\department{Chemistry and Biochemistry} % Dept. granting the degree |
| 46 |
|
|
\maketitle % Uncomment to get the title page printed out |
| 47 |
|
|
%% \copypage % Uncomment if you want a copyright page |
| 48 |
|
|
\begin{abstract} |
| 49 |
|
|
|
| 50 |
|
|
I present a dissertation utilizing an open source molecular dynamics |
| 51 |
|
|
simulation package {\sc oopse}. |
| 52 |
|
|
\end{abstract} |
| 53 |
|
|
|
| 54 |
|
|
\begin{dedication} |
| 55 |
|
|
|
| 56 |
|
|
I would like to dedicate this dissertation to my wife, who has |
| 57 |
|
|
helped and supported me throughout all of this work. |
| 58 |
|
|
|
| 59 |
|
|
\end{dedication} |
| 60 |
|
|
\tableofcontents |
| 61 |
|
|
\listoffigures % If you don't have any figures or tables, comment |
| 62 |
|
|
\listoftables % out these two lines. |
| 63 |
|
|
\lstlistoflistings |
| 64 |
|
|
|
| 65 |
|
|
\begin{acknowledge} % acknowledgments go here |
| 66 |
|
|
|
| 67 |
|
|
\noindent I would like to thank my advisor, Dr. Gezelter for his inspiring and encouraging way |
| 68 |
|
|
to guide me to a deeper understanding of knowledge work. Without his encouragement and constant |
| 69 |
|
|
guidance, I could not have finished this dissertation. I am also grateful to my colleagues |
| 70 |
|
|
Charles F.~Vardeman II, Christopher J.~Fennell, Xiuquan Sun, Yang Zheng, Kyle Daily, |
| 71 |
|
|
Kyle S.~Haygarth, Matthew A.~Meineke, Dan Combest, Pat Conforti, and Megan Sprague, |
| 72 |
|
|
who were always here for technical help and moral support. Last, but not least, |
| 73 |
tim |
2867 |
I thank my family: my fater, Zongzan Lin, and my mother, Rongying Chen, |
| 74 |
|
|
for unconditional support and encouragement to pursue my dreams, |
| 75 |
|
|
even when they went beyond boundaries of language and |
| 76 |
tim |
2690 |
geography. My wife, Xi, for her understanding and love during the past few years. Her support and |
| 77 |
tim |
2685 |
encouragement was in the end what made this dissertation possible. |
| 78 |
|
|
|
| 79 |
|
|
\end{acknowledge} |
| 80 |
|
|
|
| 81 |
|
|
\mainmatter |
| 82 |
tim |
2690 |
%\include{Introduction} |
| 83 |
|
|
%\include{Methodology} |
| 84 |
|
|
%\include{Lipid} |
| 85 |
|
|
%\include{LiquidCrystal} |
| 86 |
|
|
%\include{Conclusion} |
| 87 |
|
|
%\include{Appendix} |
| 88 |
|
|
%\include{phdBib} |