| 1 | tim | 2685 | \documentclass[nosummary,dvips,noindentfirst]{ndthesis} | 
| 2 |  |  | \usepackage{graphicx} | 
| 3 |  |  | \usepackage{psfrag} | 
| 4 |  |  | \usepackage{amsmath} | 
| 5 |  |  | \usepackage{amssymb} | 
| 6 |  |  | \usepackage{color} | 
| 7 |  |  | \usepackage{listings} | 
| 8 | tim | 2730 | %\usepackage from oopseDoc.tex | 
| 9 |  |  | \usepackage{times} | 
| 10 |  |  | \usepackage{setspace} | 
| 11 |  |  | \usepackage{tabularx} | 
| 12 |  |  | \usepackage{longtable} | 
| 13 | tim | 2830 | \lstset{language=C++,basicstyle=\footnotesize, % | 
| 14 |  |  | captionpos=b, % | 
| 15 |  |  | keywordstyle=\footnotesize, | 
| 16 |  |  | abovecaptionskip=0.5cm, belowcaptionskip=0.5cm | 
| 17 |  |  | } | 
| 18 | tim | 2685 | \includeonly{preview} | 
| 19 |  |  |  | 
| 20 |  |  | \begin{document} | 
| 21 | tim | 2805 |  | 
| 22 |  |  | \newcolumntype{A}{p{1.5in}} | 
| 23 |  |  | \newcolumntype{B}{p{0.75in}} | 
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| 28 | tim | 2810 | \newcolumntype{F}{p{1.5in}} | 
| 29 |  |  | \newcolumntype{G}{p{3.25in}} | 
| 30 | tim | 2805 |  | 
| 31 |  |  | \newcolumntype{H}{p{0.75in}} | 
| 32 |  |  | \newcolumntype{I}{p{5in}} | 
| 33 |  |  |  | 
| 34 | tim | 2830 | \renewcommand{\lstlistlistingname}{LISTS} | 
| 35 |  |  | \renewcommand{\lstlistingname}{List} | 
| 36 | tim | 2685 | \frontmatter | 
| 37 |  |  | \work{Dissertation}  % Change to ``Thesis'' for Master's thesis | 
| 38 |  |  | \title{MOLECULAR DYNAMICS SIMULATIONS OF PHOSPHOLIPID BILAYERS AND LIQUID CRYSTALS} | 
| 39 |  |  | \author{Teng Lin} | 
| 40 |  |  | \degprior{B.Sc.}                 % All previously earned degrees | 
| 41 |  |  | \degaward{Doctor of Philosophy}  % What this paper is for | 
| 42 |  |  | \advisor{J. Daniel Gezelter} % supervisor/director/advisor | 
| 43 |  |  | %% \advisorB{}            % second supervisor/director/advisor (if present) | 
| 44 |  |  | \department{Chemistry and Biochemistry}      % Dept. granting the degree | 
| 45 |  |  | \maketitle                % Uncomment to get the title page printed out | 
| 46 |  |  | %% \copypage              % Uncomment if you want a copyright page | 
| 47 |  |  | \begin{abstract} | 
| 48 |  |  |  | 
| 49 |  |  | I present a dissertation utilizing an open source molecular dynamics | 
| 50 |  |  | simulation package {\sc oopse}. | 
| 51 |  |  | \end{abstract} | 
| 52 |  |  |  | 
| 53 |  |  | \begin{dedication} | 
| 54 |  |  |  | 
| 55 |  |  | I would like to dedicate this dissertation to my wife, who has | 
| 56 |  |  | helped and supported me throughout all of this work. | 
| 57 |  |  |  | 
| 58 |  |  | \end{dedication} | 
| 59 |  |  | \tableofcontents | 
| 60 |  |  | \listoffigures          % If you don't have any figures or tables, comment | 
| 61 |  |  | \listoftables        % out these two lines. | 
| 62 |  |  | \lstlistoflistings | 
| 63 |  |  |  | 
| 64 |  |  | \begin{acknowledge}    % acknowledgments go here | 
| 65 |  |  |  | 
| 66 |  |  | \noindent I would like to thank my advisor, Dr. Gezelter for his inspiring and encouraging way | 
| 67 |  |  | to guide me to a deeper understanding of knowledge work. Without his encouragement and constant | 
| 68 |  |  | guidance, I could not have finished this dissertation. I am also grateful to my colleagues | 
| 69 |  |  | Charles F.~Vardeman II, Christopher J.~Fennell, Xiuquan Sun, Yang Zheng, Kyle Daily, | 
| 70 |  |  | Kyle S.~Haygarth, Matthew A.~Meineke, Dan Combest, Pat Conforti, and Megan Sprague, | 
| 71 |  |  | who were always here for technical help and moral support. Last, but not least, | 
| 72 |  |  | I thank my family: my parents, Zongzan Lin, and Rongying Chen, | 
| 73 |  |  | for unconditional support and encouragement to pursue my interests, | 
| 74 |  |  | even when the interests went beyond boundaries of language and | 
| 75 | tim | 2690 | geography. My wife, Xi, for her understanding and love during the past few years. Her support and | 
| 76 | tim | 2685 | encouragement was in the end what made this dissertation possible. | 
| 77 |  |  |  | 
| 78 |  |  | \end{acknowledge} | 
| 79 |  |  |  | 
| 80 |  |  | \mainmatter | 
| 81 | tim | 2690 | %\include{Introduction} | 
| 82 |  |  | %\include{Methodology} | 
| 83 |  |  | %\include{Lipid} | 
| 84 |  |  | %\include{LiquidCrystal} | 
| 85 |  |  | %\include{Conclusion} | 
| 86 |  |  | %\include{Appendix} | 
| 87 |  |  | %\include{phdBib} |