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mmeineke | 
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#include <iostream> | 
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#include <fstream> | 
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#include <cstdlib> | 
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#include <cmath> | 
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#include <cstring> | 
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#include "../../inc/SimSetup.hpp" | 
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#include "../../inc/SimInfo.hpp" | 
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#include "../../inc/Atom.hpp" | 
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#include "../../inc/Integrator.hpp" | 
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#include "../../inc/Thermo.hpp" | 
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#include "../../inc/ReadWrite.hpp" | 
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char* program_name; | 
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using namespace std; | 
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int main(int argc,char* argv[]){ | 
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  int i; | 
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  unsigned int n_atoms, eo, xo; | 
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  char* in_name; | 
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  SimSetup* startMe; | 
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  SimInfo* entry_plug; | 
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  Thermo* tStats; | 
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  int hand_made = 0; | 
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  Atom** atoms; | 
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  SRI** the_sris; | 
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  LRI** the_lris; | 
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  int n_bonds; | 
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  int n_bends; | 
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  int n_torsions; | 
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  int n_SRI; | 
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  int n_LRI; | 
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  int n_exclude; | 
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  srand48( 1337 ); // initialize the random number generator. | 
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  program_name = argv[0]; /*save the program name in case we need it*/ | 
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  if( argc < 2 ){ | 
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    cerr<< "Error, bass file is needed to run.\n"; | 
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    exit(8); | 
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  } | 
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  in_name = argv[1]; | 
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  entry_plug = new SimInfo; | 
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  startMe = new SimSetup; | 
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  startMe->setSimInfo( entry_plug ); | 
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  startMe->parseFile( in_name ); | 
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  startMe->createSim(); | 
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  delete startMe; | 
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  entry_plug->the_integrator->integrate(); | 
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  return 0 ; | 
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} | 
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