| 1 | gezelter | 3075 | \documentclass[aps,pre,endfloats*,preprint,amssymb,showpacs]{revtex4} | 
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| 4 |  |  | \begin{document} | 
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| 10 |  |  | \title{Spontaneous Corrugation of Dipolar Membranes} | 
| 11 |  |  | \author{Xiuquan Sun and J. Daniel Gezelter} | 
| 12 |  |  | \email[]{E-mail: gezelter@nd.edu} | 
| 13 |  |  | \affiliation{Department of Chemistry and Biochemistry,\\ | 
| 14 |  |  | University of Notre Dame, \\ | 
| 15 |  |  | Notre Dame, Indiana 46556} | 
| 16 |  |  |  | 
| 17 |  |  | \date{\today} | 
| 18 |  |  |  | 
| 19 |  |  | \begin{abstract} | 
| 20 |  |  | We present a simple model for dipolar membranes that gives | 
| 21 |  |  | lattice-bound point dipoles complete orientational freedom as well as | 
| 22 |  |  | translational freedom along one coordinate (out of the plane of the | 
| 23 |  |  | membrane).  There is an additional harmonic surface tension which | 
| 24 |  |  | binds each of the dipoles to the six nearest neighbors on either | 
| 25 |  |  | hexagonal or distorted-hexagonal lattices.  The translational freedom | 
| 26 |  |  | of the dipoles allows hexagonal lattices to find states that break out | 
| 27 |  |  | of the normal orientational disorder of frustrated configurations and | 
| 28 |  |  | which are stabilized by long-range antiferroelectric ordering.  In | 
| 29 |  |  | order to break out of the frustrated states, the dipolar membranes | 
| 30 |  |  | form corrugated or ``rippled'' phases that make the lattices | 
| 31 |  |  | effectively non-hexagonal.  We observe three common features of the | 
| 32 |  |  | corrugated dipolar membranes: 1) the corrugated phases develop easily | 
| 33 |  |  | when hosted on hexagonal lattices, 2) the wave vectors for the surface | 
| 34 |  |  | ripples are always found to be perpendicular to the dipole director | 
| 35 |  |  | axis, and 3) on hexagonal lattices, the dipole director axis is found | 
| 36 |  |  | to be parallel to any of the three equivalent lattice directions. | 
| 37 |  |  | \end{abstract} | 
| 38 |  |  |  | 
| 39 |  |  | \pacs{68.03.Hj, 82.20.Wt} | 
| 40 |  |  | \maketitle | 
| 41 |  |  |  | 
| 42 |  |  |  | 
| 43 |  |  | \section{Introduction} | 
| 44 |  |  | \label{Int} | 
| 45 |  |  | There has been intense recent interest in the phase behavior of | 
| 46 |  |  | dipolar | 
| 47 |  |  | fluids.\cite{Tlusty00,Teixeira00,Tavares02,Duncan04,Holm05,Duncan06} | 
| 48 |  |  | Due to the anisotropic interactions between dipoles, dipolar fluids | 
| 49 |  |  | can present anomalous phase behavior.  Examples of condensed-phase | 
| 50 |  |  | dipolar systems include ferrofluids, electro-rheological fluids, and | 
| 51 |  |  | even biological membranes.  Computer simulations have provided useful | 
| 52 |  |  | information on the structural features and phase transition of the | 
| 53 |  |  | dipolar fluids. Simulation results indicate that at low densities, | 
| 54 |  |  | these fluids spontaneously organize into head-to-tail dipolar | 
| 55 |  |  | ``chains''.\cite{Teixeira00,Holm05} At low temperatures, these chains | 
| 56 |  |  | and rings prevent the occurrence of a liquid-gas phase transition. | 
| 57 |  |  | However, Tlusty and Safran showed that there is a defect-induced phase | 
| 58 |  |  | separation into a low-density ``chain'' phase and a higher density | 
| 59 |  |  | Y-defect phase.\cite{Tlusty00} Recently, inspired by experimental | 
| 60 |  |  | studies on monolayers of dipolar fluids, theoretical models using | 
| 61 |  |  | two-dimensional dipolar soft spheres have appeared in the literature. | 
| 62 |  |  | Tavares {\it et al.} tested their theory for chain and ring length | 
| 63 |  |  | distributions in two dimensions and carried out Monte Carlo | 
| 64 |  |  | simulations in the low-density phase.\cite{Tavares02} Duncan and Camp | 
| 65 |  |  | performed dynamical simulations on two-dimensional dipolar fluids to | 
| 66 |  |  | study transport and orientational dynamics in these | 
| 67 |  |  | systems.\cite{Duncan04} They have recently revisited two-dimensional | 
| 68 |  |  | systems to study the kinetic conditions for the defect-induced | 
| 69 |  |  | condensation into the Y-defect phase.\cite{Duncan06} | 
| 70 |  |  |  | 
| 71 |  |  | Although they are not traditionally classified as 2-dimensional | 
| 72 |  |  | dipolar fluids, hydrated lipids aggregate spontaneously to form | 
| 73 |  |  | bilayers which exhibit a variety of phases depending on their | 
| 74 |  |  | temperatures and compositions.  At high temperatures, the fluid | 
| 75 |  |  | ($L_{\alpha}$) phase of Phosphatidylcholine (PC) lipids closely | 
| 76 |  |  | resembles a dipolar fluid.  However, at lower temperatures, packing of | 
| 77 |  |  | the molecules becomes important, and the translational freedom of | 
| 78 |  |  | lipid molecules is thought to be substantially restricted.  A | 
| 79 |  |  | corrugated or ``rippled'' phase ($P_{\beta'}$) appears as an | 
| 80 |  |  | intermediate phase between the gel ($L_\beta$) and fluid | 
| 81 |  |  | ($L_{\alpha}$) phases for relatively pure phosphatidylcholine (PC) | 
| 82 |  |  | bilayers.  The $P_{\beta'}$ phase has attracted substantial | 
| 83 |  |  | experimental interest over the past 30 years. Most structural | 
| 84 |  |  | information of the ripple phase has been obtained by the X-ray | 
| 85 |  |  | diffraction~\cite{Sun96,Katsaras00} and freeze-fracture electron | 
| 86 |  |  | microscopy (FFEM).~\cite{Copeland80,Meyer96} Recently, Kaasgaard {\it | 
| 87 |  |  | et al.} used atomic force microscopy (AFM) to observe ripple phase | 
| 88 |  |  | morphology in bilayers supported on mica.~\cite{Kaasgaard03} The | 
| 89 |  |  | experimental results provide strong support for a 2-dimensional | 
| 90 |  |  | hexagonal packing lattice of the lipid molecules within the ripple | 
| 91 |  |  | phase.  This is a notable change from the observed lipid packing | 
| 92 |  |  | within the gel phase.~\cite{Cevc87} | 
| 93 |  |  |  | 
| 94 |  |  | Although the results of dipolar fluid simulations can not be directly | 
| 95 |  |  | mapped onto the phases of lipid bilayers, the rich behaviors exhibited | 
| 96 |  |  | by simple dipolar models can give us some insight into the corrugation | 
| 97 |  |  | phenomenon of the $P_{\beta'}$ phase.  There have been a number of | 
| 98 |  |  | theoretical approaches (and some heroic simulations) undertaken to try | 
| 99 |  |  | to explain this phase, but to date, none have looked specifically at | 
| 100 |  |  | the contribution of the dipolar character of the lipid head groups | 
| 101 |  |  | towards this corrugation.  Before we present our simple model, we will | 
| 102 |  |  | briefly survey the previous theoretical work on this topic. | 
| 103 |  |  |  | 
| 104 |  |  | The theoretical models that have been put forward to explain the | 
| 105 |  |  | formation of the $P_{\beta'}$ phase have presented a number of | 
| 106 |  |  | conflicting but intriguing explanations. Marder {\it et al.} used a | 
| 107 |  |  | curvature-dependent Landau-de Gennes free-energy functional to predict | 
| 108 |  |  | a rippled phase.~\cite{Marder84} This model and other related | 
| 109 |  |  | continuum models predict higher fluidity in convex regions and that | 
| 110 |  |  | concave portions of the membrane correspond to more solid-like | 
| 111 |  |  | regions.  Carlson and Sethna used a packing-competition model (in | 
| 112 |  |  | which head groups and chains have competing packing energetics) to | 
| 113 |  |  | predict the formation of a ripple-like phase.  Their model predicted | 
| 114 |  |  | that the high-curvature portions have lower-chain packing and | 
| 115 |  |  | correspond to more fluid-like regions.  Goldstein and Leibler used a | 
| 116 |  |  | mean-field approach with a planar model for {\em inter-lamellar} | 
| 117 |  |  | interactions to predict rippling in multilamellar | 
| 118 |  |  | phases.~\cite{Goldstein88} McCullough and Scott proposed that the {\em | 
| 119 |  |  | anisotropy of the nearest-neighbor interactions} coupled to | 
| 120 |  |  | hydrophobic constraining forces which restrict height differences | 
| 121 |  |  | between nearest neighbors is the origin of the ripple | 
| 122 |  |  | phase.~\cite{McCullough90} Lubensky and MacKintosh introduced a Landau | 
| 123 |  |  | theory for tilt order and curvature of a single membrane and concluded | 
| 124 |  |  | that {\em coupling of molecular tilt to membrane curvature} is | 
| 125 |  |  | responsible for the production of ripples.~\cite{Lubensky93} Misbah, | 
| 126 |  |  | Duplat and Houchmandzadeh proposed that {\em inter-layer dipolar | 
| 127 |  |  | interactions} can lead to ripple instabilities.~\cite{Misbah98} | 
| 128 |  |  | Heimburg presented a {\em coexistence model} for ripple formation in | 
| 129 |  |  | which he postulates that fluid-phase line defects cause sharp | 
| 130 |  |  | curvature between relatively flat gel-phase regions.~\cite{Heimburg00} | 
| 131 |  |  | Kubica has suggested that a lattice model of polar head groups could | 
| 132 |  |  | be valuable in trying to understand bilayer phase | 
| 133 |  |  | formation.~\cite{Kubica02} Bannerjee used Monte Carlo simulations of | 
| 134 |  |  | lamellar stacks of hexagonal lattices to show that large headgroups | 
| 135 |  |  | and molecular tilt with respect to the membrane normal vector can | 
| 136 |  |  | cause bulk rippling.~\cite{Bannerjee02} | 
| 137 |  |  |  | 
| 138 |  |  | Large-scale molecular dynamics simulations have also been performed on | 
| 139 |  |  | rippled phases using united atom as well as molecular scale | 
| 140 |  |  | models. De~Vries {\it et al.} studied the structure of lecithin ripple | 
| 141 |  |  | phases via molecular dynamics and their simulations seem to support | 
| 142 |  |  | the coexistence models (i.e. fluid-like chain dynamics was observed in | 
| 143 |  |  | the kink regions).~\cite{deVries05} A similar coarse-grained approach | 
| 144 |  |  | has been used to study the line tension of bilayer | 
| 145 |  |  | edges.\cite{Jiang04,deJoannis06} Ayton and Voth have found significant | 
| 146 |  |  | undulations in zero-surface-tension states of membranes simulated via | 
| 147 |  |  | dissipative particle dynamics, but their results are consistent with | 
| 148 |  |  | purely thermal undulations.~\cite{Ayton02} Brannigan, Tamboli and | 
| 149 |  |  | Brown have used a molecular scale model to elucidate the role of | 
| 150 |  |  | molecular shape on membrane phase behavior and | 
| 151 |  |  | elasticity.~\cite{Brannigan04b} They have also observed a buckled | 
| 152 |  |  | hexatic phase with strong tail and moderate alignment | 
| 153 |  |  | attractions.~\cite{Brannigan04a} | 
| 154 |  |  |  | 
| 155 |  |  | The problem with using atomistic and even coarse-grained approaches to | 
| 156 |  |  | study this phenomenon is that only a relatively small number of | 
| 157 |  |  | periods of the corrugation (i.e. one or two) can be realistically | 
| 158 |  |  | simulated given current technology.  Also, simulations of lipid | 
| 159 |  |  | bilayers are traditionally carried out with periodic boundary | 
| 160 |  |  | conditions in two or three dimensions and these have the potential to | 
| 161 |  |  | enhance the periodicity of the system at that wavelength.  To avoid | 
| 162 |  |  | this pitfall, we are using a model which allows us to have | 
| 163 |  |  | sufficiently large systems so that we are not causing artificial | 
| 164 |  |  | corrugation through the use of periodic boundary conditions. | 
| 165 |  |  |  | 
| 166 |  |  | At the other extreme in density from the traditional simulations of | 
| 167 |  |  | dipolar fluids is the behavior of dipoles locked on regular lattices. | 
| 168 |  |  | Ferroelectric states (with long-range dipolar order) can be observed | 
| 169 |  |  | in dipolar systems with non-hexagonal packings.  However, {\em | 
| 170 |  |  | hexagonally}-packed 2-D dipolar systems are inherently frustrated and | 
| 171 |  |  | one would expect a dipolar-disordered phase to be the lowest free | 
| 172 |  |  | energy configuration.  Therefore, it would seem unlikely that a | 
| 173 |  |  | frustrated lattice in a dipolar-disordered state could exhibit the | 
| 174 |  |  | long-range periodicity in the range of 100-600 \AA (as exhibited in | 
| 175 |  |  | the ripple phases studied by Kaasgard {\it et | 
| 176 |  |  | al.}).~\cite{Kaasgaard03} | 
| 177 |  |  |  | 
| 178 |  |  | Is there an intermediate model between the low-density dipolar fluids | 
| 179 |  |  | and the rigid lattice models which has the potential to exhibit the | 
| 180 |  |  | corrugation phenomenon of the $P_{\beta'}$ phase?  What we present | 
| 181 |  |  | here is an attempt to find a simple dipolar model which will exhibit | 
| 182 |  |  | this behavior.  We are using a modified XYZ lattice model; details of | 
| 183 |  |  | the model can be found in section | 
| 184 |  |  | \ref{sec:model}, results of Monte Carlo simulations using this model | 
| 185 |  |  | are presented in section | 
| 186 |  |  | \ref{sec:results}, and section \ref{sec:discussion} contains our conclusions. | 
| 187 |  |  |  | 
| 188 |  |  | \section{2-D Dipolar Membrane} | 
| 189 |  |  | \label{sec:model} | 
| 190 |  |  |  | 
| 191 |  |  | The point of developing this model was to arrive at the simplest | 
| 192 |  |  | possible theoretical model which could exhibit spontaneous corrugation | 
| 193 |  |  | of a two-dimensional dipolar medium.  Since molecules in the ripple | 
| 194 |  |  | phase have limited translational freedom, we have chosen a lattice to | 
| 195 |  |  | support the dipoles in the x-y plane.  The lattice may be either | 
| 196 |  |  | hexagonal (lattice constants $a/b = \sqrt{3}$) or non-hexagonal. | 
| 197 |  |  | However, each dipole has 3 degrees of freedom.  They may move freely | 
| 198 |  |  | {\em out} of the x-y plane (along the $z$ axis), and they have | 
| 199 |  |  | complete orientational freedom ($0 <= \theta <= \pi$, $0 <= \phi < 2 | 
| 200 |  |  | \pi$).  This is essentially a modified X-Y-Z model with translational | 
| 201 |  |  | freedom along the z-axis. | 
| 202 |  |  |  | 
| 203 |  |  | The potential energy of the system, | 
| 204 |  |  | \begin{equation} | 
| 205 |  |  | V = \sum_i \left( \sum_{j \in NN_i}^6 | 
| 206 |  |  | \frac{k_r}{2}\left( r_{ij}-\sigma \right)^2  +  \sum_{j>i} \frac{|\mu|^2}{4\pi \epsilon_0 r_{ij}^3} \left[ | 
| 207 |  |  | {\mathbf{\hat u}_i} \cdot {\mathbf{\hat u}_j} - | 
| 208 |  |  | 3({\mathbf{\hat u}_i} \cdot {\mathbf{\hat | 
| 209 |  |  | r}_{ij}})({\mathbf{\hat u}_j} \cdot {\mathbf{\hat r}_{ij}})\right] | 
| 210 |  |  | \right) | 
| 211 |  |  | \label{eq:pot} | 
| 212 |  |  | \end{equation} | 
| 213 |  |  |  | 
| 214 |  |  | In this potential, $\mathbf{\hat u}_i$ is the unit vector pointing | 
| 215 |  |  | along dipole $i$ and $\mathbf{\hat r}_{ij}$ is the unit vector | 
| 216 |  |  | pointing along the inter-dipole vector $\mathbf{r}_{ij}$.  The entire | 
| 217 |  |  | potential is governed by three parameters, the dipolar strength | 
| 218 |  |  | ($\mu$), the harmonic spring constant ($k_r$) and the preferred | 
| 219 |  |  | intermolecular spacing ($\sigma$).  In practice, we set the value of | 
| 220 |  |  | $\sigma$ to the average inter-molecular spacing from the planar | 
| 221 |  |  | lattice, yielding a potential model that has only two parameters for a | 
| 222 |  |  | particular choice of lattice constants $a$ (along the $x$-axis) and | 
| 223 |  |  | $b$ (along the $y$-axis).  We also define a set of reduced parameters | 
| 224 |  |  | based on the length scale ($\sigma$) and the energy of the harmonic | 
| 225 |  |  | potential at a deformation of 2 $\sigma$ ($\epsilon = k_r \sigma^2 / | 
| 226 |  |  | 2$).  Using these two constants, we perform our calculations using | 
| 227 |  |  | reduced distances, ($r^{*} = r / \sigma$), temperatures ($T^{*} = 2 | 
| 228 |  |  | k_B T / k_r \sigma^2$), densities ($\rho^{*} = N \sigma^2 / L_x L_y$), | 
| 229 |  |  | and dipole moments ($\mu^{*} = \mu / \sqrt{4 \pi \epsilon_0 \sigma^5 | 
| 230 |  |  | k_r / 2}$). | 
| 231 |  |  |  | 
| 232 |  |  | To investigate the phase behavior of this model, we have performed a | 
| 233 |  |  | series of Metropolis Monte Carlo simulations of moderately-sized (34.3 | 
| 234 |  |  | $\sigma$ on a side) patches of membrane hosted on both hexagonal | 
| 235 |  |  | ($\gamma = a/b = \sqrt{3}$) and non-hexagonal ($\gamma \neq \sqrt{3}$) | 
| 236 |  |  | lattices.  The linear extent of one edge of the monolayer was $20 a$ | 
| 237 |  |  | and the system was kept roughly square. The average distance that | 
| 238 |  |  | coplanar dipoles were positioned from their six nearest neighbors was | 
| 239 |  |  | 1 $\sigma$ (on both hexagonal and non-hexagonal lattices).  Typical | 
| 240 |  |  | system sizes were 1360 dipoles for the hexagonal lattices and 840-2800 | 
| 241 |  |  | dipoles for the non-hexagonal lattices.  Periodic boundary conditions | 
| 242 |  |  | were used, and the cutoff for the dipole-dipole interaction was set to | 
| 243 |  |  | 4.3 $\sigma$.  All parameters ($T^{*}$, $\mu^{*}$, and $\gamma$) were | 
| 244 |  |  | varied systematically to study the effects of these parameters on the | 
| 245 |  |  | formation of ripple-like phases. | 
| 246 |  |  |  | 
| 247 |  |  | \section{Results and Analysis} | 
| 248 |  |  | \label{sec:results} | 
| 249 |  |  |  | 
| 250 |  |  | \subsection{Dipolar Ordering and Coexistence Temperatures} | 
| 251 |  |  | The principal method for observing the orientational ordering | 
| 252 |  |  | transition in dipolar systems is the $P_2$ order parameter (defined as | 
| 253 |  |  | $1.5 \times \lambda_{max}$, where $\lambda_{max}$ is the largest | 
| 254 |  |  | eigenvalue of the matrix, | 
| 255 |  |  | \begin{equation} | 
| 256 |  |  | {\mathsf{S}} = \frac{1}{N} \sum_i \left( | 
| 257 |  |  | \begin{array}{ccc} | 
| 258 |  |  | u^{x}_i u^{x}_i-\frac{1}{3} & u^{x}_i u^{y}_i & u^{x}_i u^{z}_i \\ | 
| 259 |  |  | u^{y}_i u^{x}_i  & u^{y}_i u^{y}_i -\frac{1}{3} & u^{y}_i u^{z}_i \\ | 
| 260 |  |  | u^{z}_i u^{x}_i & u^{z}_i u^{y}_i  & u^{z}_i u^{z}_i -\frac{1}{3} | 
| 261 |  |  | \end{array} \right). | 
| 262 |  |  | \label{eq:opmatrix} | 
| 263 |  |  | \end{equation} | 
| 264 |  |  | Here $u^{\alpha}_i$ is the $\alpha=x,y,z$ component of the unit vector | 
| 265 |  |  | for dipole $i$.  $P_2$ will be $1.0$ for a perfectly-ordered system | 
| 266 |  |  | and near $0$ for a randomized system.  Note that this order parameter | 
| 267 |  |  | is {\em not} equal to the polarization of the system.  For example, | 
| 268 |  |  | the polarization of the perfect antiferroelectric system is $0$, but | 
| 269 |  |  | $P_2$ for an antiferroelectric system is $1$.  The eigenvector of | 
| 270 |  |  | $\mathsf{S}$ corresponding to the largest eigenvalue is familiar as | 
| 271 |  |  | the director axis, which can be used to determine a privileged dipolar | 
| 272 |  |  | axis for dipole-ordered systems.  The top panel in Fig. \ref{phase} | 
| 273 |  |  | shows the values of $P_2$ as a function of temperature for both | 
| 274 |  |  | hexagonal ($\gamma = 1.732$) and non-hexagonal ($\gamma=1.875$) | 
| 275 |  |  | lattices. | 
| 276 |  |  |  | 
| 277 |  |  | \begin{figure}[ht] | 
| 278 |  |  | \centering | 
| 279 |  |  | \caption{Top panel: The $P_2$ dipolar order parameter as a function of | 
| 280 |  |  | temperature for both hexagonal ($\gamma = 1.732$) and non-hexagonal | 
| 281 |  |  | ($\gamma = 1.875$) lattices.  Bottom Panel: The phase diagram for the | 
| 282 |  |  | dipolar membrane model.  The line denotes the division between the | 
| 283 |  |  | dipolar ordered (antiferroelectric) and disordered phases.  An | 
| 284 |  |  | enlarged view near the hexagonal lattice is shown inset.} | 
| 285 |  |  | \includegraphics[width=\linewidth]{phase.pdf} | 
| 286 |  |  | \label{phase} | 
| 287 |  |  | \end{figure} | 
| 288 |  |  |  | 
| 289 |  |  | There is a clear order-disorder transition in evidence from this data. | 
| 290 |  |  | Both the hexagonal and non-hexagonal lattices have dipolar-ordered | 
| 291 |  |  | low-temperature phases, and orientationally-disordered high | 
| 292 |  |  | temperature phases.  The coexistence temperature for the hexagonal | 
| 293 |  |  | lattice is significantly lower than for the non-hexagonal lattices, | 
| 294 |  |  | and the bulk polarization is approximately $0$ for both dipolar | 
| 295 |  |  | ordered and disordered phases.  This gives strong evidence that the | 
| 296 |  |  | dipolar ordered phase is antiferroelectric.  We have repeated the | 
| 297 |  |  | Monte Carlo simulations over a wide range of lattice ratios ($\gamma$) | 
| 298 |  |  | to generate a dipolar order/disorder phase diagram.  The bottom panel | 
| 299 |  |  | in Fig. \ref{phase} shows that the hexagonal lattice is a | 
| 300 |  |  | low-temperature cusp in the $T^{*}-\gamma$ phase diagram. | 
| 301 |  |  |  | 
| 302 |  |  | This phase diagram is remarkable in that it shows an antiferroelectric | 
| 303 |  |  | phase near $\gamma=1.732$ where one would expect lattice frustration | 
| 304 |  |  | to result in disordered phases at all temperatures.  Observations of | 
| 305 |  |  | the configurations in this phase show clearly that the system has | 
| 306 |  |  | accomplished dipolar orderering by forming large ripple-like | 
| 307 |  |  | structures.  We have observed antiferroelectric ordering in all three | 
| 308 |  |  | of the equivalent directions on the hexagonal lattice, and the dipoles | 
| 309 |  |  | have been observed to organize perpendicular to the membrane normal | 
| 310 |  |  | (in the plane of the membrane).  It is particularly interesting to | 
| 311 |  |  | note that the ripple-like structures have also been observed to | 
| 312 |  |  | propagate in the three equivalent directions on the lattice, but the | 
| 313 |  |  | {\em direction of ripple propagation is always perpendicular to the | 
| 314 |  |  | dipole director axis}.  A snapshot of a typical antiferroelectric | 
| 315 |  |  | rippled structure is shown in Fig. \ref{fig:snapshot}. | 
| 316 |  |  |  | 
| 317 |  |  | \begin{figure}[ht] | 
| 318 |  |  | \centering | 
| 319 |  |  | \caption{Top and Side views of a representative configuration for the | 
| 320 |  |  | dipolar ordered phase supported on the hexagonal lattice. Note the | 
| 321 |  |  | antiferroelectric ordering and the long wavelength buckling of the | 
| 322 |  |  | membrane.  Dipolar ordering has been observed in all three equivalent | 
| 323 |  |  | directions on the hexagonal lattice, and the ripple direction is | 
| 324 |  |  | always perpendicular to the director axis for the dipoles.} | 
| 325 |  |  | \includegraphics[width=5.5in]{snapshot.pdf} | 
| 326 |  |  | \label{fig:snapshot} | 
| 327 |  |  | \end{figure} | 
| 328 |  |  |  | 
| 329 |  |  | \subsection{Discriminating Ripples from Thermal Undulations} | 
| 330 |  |  |  | 
| 331 |  |  | In order to be sure that the structures we have observed are actually | 
| 332 |  |  | a rippled phase and not simply thermal undulations, we have computed | 
| 333 |  |  | the undulation spectrum, | 
| 334 |  |  | \begin{equation} | 
| 335 |  |  | h(\vec{q}) = A^{-1/2} \int d\vec{r} | 
| 336 |  |  | h(\vec{r}) e^{-i \vec{q}\cdot\vec{r}} | 
| 337 |  |  | \end{equation} | 
| 338 |  |  | where $h(\vec{r})$ is the height of the membrane at location $\vec{r} | 
| 339 |  |  | = (x,y)$.~\cite{Safran94} In simple (and more complicated) elastic | 
| 340 |  |  | continuum models, Brannigan {\it et al.} have shown that in the $NVT$ | 
| 341 |  |  | ensemble, the absolute value of the undulation spectrum can be | 
| 342 |  |  | written, | 
| 343 |  |  | \begin{equation} | 
| 344 |  |  | \langle | h(q)|^2 \rangle_{NVT} = \frac{k_B T}{k_c |\vec{q}|^4 + | 
| 345 |  |  | \tilde{\gamma}|\vec{q}|^2}, | 
| 346 |  |  | \label{eq:fit} | 
| 347 |  |  | \end{equation} | 
| 348 |  |  | where $k_c$ is the bending modulus for the membrane, and | 
| 349 |  |  | $\tilde{\gamma}$ is the mechanical surface | 
| 350 |  |  | tension.~\cite{Brannigan04b} | 
| 351 |  |  |  | 
| 352 |  |  | The undulation spectrum is computed by superimposing a rectangular | 
| 353 |  |  | grid on top of the membrane, and by assigning height ($h(\vec{r})$) | 
| 354 |  |  | values to the grid from the average of all dipoles that fall within a | 
| 355 |  |  | given $\vec{r}+d\vec{r}$ grid area.  Empty grid pixels are assigned | 
| 356 |  |  | height values by interpolation from the nearest neighbor pixels.  A | 
| 357 |  |  | standard 2-d Fourier transform is then used to obtain $\langle | | 
| 358 |  |  | h(q)|^2 \rangle$. | 
| 359 |  |  |  | 
| 360 |  |  | The systems studied in this paper have relatively small bending moduli | 
| 361 |  |  | ($k_c$) and relatively large mechanical surface tensions | 
| 362 |  |  | ($\tilde{\gamma}$).  In practice, the best fits to our undulation | 
| 363 |  |  | spectra are obtained by approximating the value of $k_c$ to 0.  In | 
| 364 |  |  | Fig. \ref{fig:fit} we show typical undulation spectra for two | 
| 365 |  |  | different regions of the phase diagram along with their fits from the | 
| 366 |  |  | Landau free energy approach (Eq. \ref{eq:fit}).  In the | 
| 367 |  |  | high-temperature disordered phase, the Landau fits can be nearly | 
| 368 |  |  | perfect, and from these fits we can estimate the bending modulus and | 
| 369 |  |  | the mechanical surface tension. | 
| 370 |  |  |  | 
| 371 |  |  | For the dipolar-ordered hexagonal lattice near the coexistence | 
| 372 |  |  | temperature, however, we observe long wavelength undulations that are | 
| 373 |  |  | far outliers to the fits.  That is, the Landau free energy fits are | 
| 374 |  |  | well within error bars for all other points, but can be off by {\em | 
| 375 |  |  | orders of magnitude} for a few low frequency components. | 
| 376 |  |  |  | 
| 377 |  |  | We interpret these outliers as evidence that these low frequency modes | 
| 378 |  |  | are {\em non-thermal undulations}.  We take this as evidence that we | 
| 379 |  |  | are actually seeing a rippled phase developing in this model system. | 
| 380 |  |  |  | 
| 381 |  |  | \begin{figure}[ht] | 
| 382 |  |  | \centering | 
| 383 |  |  | \caption{Evidence that the observed ripples are {\em not} thermal | 
| 384 |  |  | undulations is obtained from the 2-d fourier transform $\langle | 
| 385 |  |  | |h^{*}(\vec{q})|^2 \rangle$ of the height profile ($\langle h^{*}(x,y) | 
| 386 |  |  | \rangle$). Rippled samples show low-wavelength peaks that are | 
| 387 |  |  | outliers on the Landau free energy fits.  Samples exhibiting only | 
| 388 |  |  | thermal undulations fit Eq. \ref{eq:fit} remarkably well.} | 
| 389 |  |  | \includegraphics[width=5.5in]{fit.pdf} | 
| 390 |  |  | \label{fig:fit} | 
| 391 |  |  | \end{figure} | 
| 392 |  |  |  | 
| 393 |  |  | \subsection{Effects of Potential Parameters on Amplitude and Wavelength} | 
| 394 |  |  |  | 
| 395 |  |  | We have used two different methods to estimate the amplitude and | 
| 396 |  |  | periodicity of the ripples.  The first method requires projection of | 
| 397 |  |  | the ripples onto a one dimensional rippling axis. Since the rippling | 
| 398 |  |  | is always perpendicular to the dipole director axis, we can define a | 
| 399 |  |  | ripple vector as follows.  The largest eigenvector, $s_1$, of the | 
| 400 |  |  | $\mathsf{S}$ matrix in Eq. \ref{eq:opmatrix} is projected onto a | 
| 401 |  |  | planar director axis, | 
| 402 |  |  | \begin{equation} | 
| 403 |  |  | \vec{d} = \left(\begin{array}{c} | 
| 404 |  |  | \vec{s}_1 \cdot \hat{i} \\ | 
| 405 |  |  | \vec{s}_1 \cdot \hat{j} \\ | 
| 406 |  |  | 0 | 
| 407 |  |  | \end{array} \right). | 
| 408 |  |  | \end{equation} | 
| 409 |  |  | ($\hat{i}$, $\hat{j}$ and $\hat{k}$ are unit vectors along the $x$, | 
| 410 |  |  | $y$, and $z$ axes, respectively.)  The rippling axis is in the plane of | 
| 411 |  |  | the membrane and is perpendicular to the planar director axis, | 
| 412 |  |  | \begin{equation} | 
| 413 |  |  | \vec{q}_{\mathrm{rip}} = \vec{d} \times \hat{k} | 
| 414 |  |  | \end{equation} | 
| 415 |  |  | We can then find the height profile of the membrane along the ripple | 
| 416 |  |  | axis by projecting heights of the dipoles to obtain a one-dimensional | 
| 417 |  |  | height profile, $h(q_{\mathrm{rip}})$. Ripple wavelengths can be | 
| 418 |  |  | estimated from the largest non-thermal low-frequency component in the | 
| 419 |  |  | fourier transform of $h(q_{\mathrm{rip}})$.  Amplitudes can be | 
| 420 |  |  | estimated by measuring peak-to-trough distances in | 
| 421 |  |  | $h(q_{\mathrm{rip}})$ itself. | 
| 422 |  |  |  | 
| 423 | xsun | 3091 | \begin{figure}[ht] | 
| 424 |  |  | \centering | 
| 425 |  |  | \caption{Contours of the height-dipole correlation function as a function | 
| 426 |  |  | of the dot product between the dipole ($\hat{\mu}$) and inter-dipole | 
| 427 |  |  | separation vector ($\hat{r}$) and the distance ($r$) between the dipoles. | 
| 428 |  |  | Perfect height correlation (contours approaching 1) are present in the | 
| 429 |  |  | ordered phase when the two dipoles are in the same head-to-tail line. | 
| 430 |  |  | Anti-correlation (contours below 0) is only seen when the inter-dipole | 
| 431 |  |  | vector is perpendicular to the dipoles. } | 
| 432 |  |  | \includegraphics[width=\linewidth]{height-dipole-correlation.pdf} | 
| 433 |  |  | \label{fig:CrossCorrelation} | 
| 434 |  |  | \end{figure} | 
| 435 |  |  |  | 
| 436 | gezelter | 3075 | A second, more accurate, and simpler method for estimating ripple | 
| 437 |  |  | shape is to extract the wavelength and height information directly | 
| 438 |  |  | from the largest non-thermal peak in the undulation spectrum.  For | 
| 439 |  |  | large-amplitude ripples, the two methods give similar results.  The | 
| 440 |  |  | one-dimensional projection method is more prone to noise (particularly | 
| 441 |  |  | in the amplitude estimates for the non-hexagonal lattices).  We report | 
| 442 |  |  | amplitudes and wavelengths taken directly from the undulation spectrum | 
| 443 |  |  | below. | 
| 444 |  |  |  | 
| 445 |  |  | In the hexagonal lattice ($\gamma = \sqrt{3}$), the rippling is | 
| 446 |  |  | observed for temperatures ($T^{*}$) from $61-122$.  The wavelength of | 
| 447 |  |  | the ripples is remarkably stable at 21.4~$\sigma$ for all but the | 
| 448 |  |  | temperatures closest to the order-disorder transition.  At $T^{*} = | 
| 449 |  |  | 122$, the wavelength drops to 17.1~$\sigma$. | 
| 450 |  |  |  | 
| 451 |  |  | The dependence of the amplitude on temperature is shown in the top | 
| 452 |  |  | panel of Fig. \ref{fig:Amplitude}.  The rippled structures shrink | 
| 453 |  |  | smoothly as the temperature rises towards the order-disorder | 
| 454 |  |  | transition.  The wavelengths and amplitudes we observe are | 
| 455 |  |  | surprisingly close to the $\Lambda / 2$ phase observed by Kaasgaard | 
| 456 |  |  | {\it et al.} in their work on PC-based lipids.\cite{Kaasgaard03} | 
| 457 |  |  | However, this is coincidental agreement based on a choice of 7~\AA~as | 
| 458 |  |  | the mean spacing between lipids. | 
| 459 |  |  |  | 
| 460 |  |  | \begin{figure}[ht] | 
| 461 |  |  | \centering | 
| 462 |  |  | \caption{a) The amplitude $A^{*}$ of the ripples vs. temperature for a | 
| 463 |  |  | hexagonal lattice. b) The amplitude $A^{*}$ of the ripples vs. dipole | 
| 464 |  |  | strength ($\mu^{*}$) for both the hexagonal lattice (circles) and | 
| 465 |  |  | non-hexagonal lattice (squares).  The reduced temperatures were kept | 
| 466 |  |  | fixed at $T^{*} = 94$ for the hexagonal lattice and $T^{*} = 106$ for | 
| 467 |  |  | the non-hexagonal lattice (approximately 2/3 of the order-disorder | 
| 468 |  |  | transition temperature for each lattice).} | 
| 469 |  |  | \includegraphics[width=\linewidth]{properties_sq.pdf} | 
| 470 |  |  | \label{fig:Amplitude} | 
| 471 |  |  | \end{figure} | 
| 472 |  |  |  | 
| 473 |  |  | The ripples can be made to disappear by increasing the internal | 
| 474 |  |  | surface tension (i.e. by increasing $k_r$ or equivalently, reducing | 
| 475 |  |  | the dipole moment).  The amplitude of the ripples depends critically | 
| 476 |  |  | on the strength of the dipole moments ($\mu^{*}$) in Eq. \ref{eq:pot}. | 
| 477 |  |  | If the dipoles are weakened substantially (below $\mu^{*}$ = 20) at a | 
| 478 |  |  | fixed temperature of 94, the membrane loses dipolar ordering | 
| 479 |  |  | and the ripple structures. The ripples reach a peak amplitude of | 
| 480 |  |  | 3.7~$\sigma$ at a dipolar strength of 25.  We show the dependence | 
| 481 |  |  | of ripple amplitude on the dipolar strength in | 
| 482 |  |  | Fig. \ref{fig:Amplitude}. | 
| 483 |  |  |  | 
| 484 |  |  | \subsection{Non-hexagonal lattices} | 
| 485 |  |  |  | 
| 486 |  |  | We have also investigated the effect of the lattice geometry by | 
| 487 |  |  | changing the ratio of lattice constants ($\gamma$) while keeping the | 
| 488 |  |  | average nearest-neighbor spacing constant. The antiferroelectric state | 
| 489 |  |  | is accessible for all $\gamma$ values we have used, although the | 
| 490 |  |  | distorted hexagonal lattices prefer a particular director axis due to | 
| 491 |  |  | the anisotropy of the lattice. | 
| 492 |  |  |  | 
| 493 |  |  | Our observation of rippling behavior was not limited to the hexagonal | 
| 494 |  |  | lattices.  In non-hexagonal lattices the antiferroelectric phase can | 
| 495 |  |  | develop nearly instantaneously in the Monte Carlo simulations, and | 
| 496 |  |  | these dipolar-ordered phases tend to be remarkably flat.  Whenever | 
| 497 |  |  | rippling has been observed in these non-hexagonal lattices | 
| 498 |  |  | (e.g. $\gamma = 1.875$), we see relatively short ripple wavelengths | 
| 499 |  |  | (14 $\sigma$) and amplitudes of 2.4~$\sigma$.  These ripples are | 
| 500 |  |  | weakly dependent on dipolar strength (see Fig. \ref{fig:Amplitude}), | 
| 501 |  |  | although below a dipolar strength of $\mu^{*} = 20$, the membrane | 
| 502 |  |  | loses dipolar ordering and displays only thermal undulations. | 
| 503 |  |  |  | 
| 504 |  |  | The ripple phase does {\em not} appear at all values of $\gamma$.  We | 
| 505 |  |  | have only observed non-thermal undulations in the range $1.625 < | 
| 506 |  |  | \gamma < 1.875$.  Outside this range, the order-disorder transition in | 
| 507 |  |  | the dipoles remains, but the ordered dipolar phase has only thermal | 
| 508 |  |  | undulations.  This is one of our strongest pieces of evidence that | 
| 509 |  |  | rippling is a symmetry-breaking phenomenon for hexagonal and | 
| 510 |  |  | nearly-hexagonal lattices. | 
| 511 |  |  |  | 
| 512 |  |  | \subsection{Effects of System Size} | 
| 513 |  |  | To evaluate the effect of finite system size, we have performed a | 
| 514 |  |  | series of simulations on the hexagonal lattice at a reduced | 
| 515 |  |  | temperature of 122, which is just below the order-disorder transition | 
| 516 |  |  | temperature ($T^{*} = 139$).  These conditions are in the | 
| 517 |  |  | dipole-ordered and rippled portion of the phase diagram.  These are | 
| 518 |  |  | also the conditions that should be most susceptible to system size | 
| 519 |  |  | effects. | 
| 520 |  |  |  | 
| 521 |  |  | \begin{figure}[ht] | 
| 522 |  |  | \centering | 
| 523 |  |  | \caption{The ripple wavelength (top) and amplitude (bottom) as a | 
| 524 |  |  | function of system size for a hexagonal lattice ($\gamma=1.732$) at $T^{*} = | 
| 525 |  |  | 122$.} | 
| 526 |  |  | \includegraphics[width=\linewidth]{SystemSize.pdf} | 
| 527 |  |  | \label{fig:systemsize} | 
| 528 |  |  | \end{figure} | 
| 529 |  |  |  | 
| 530 |  |  | There is substantial dependence on system size for small (less than | 
| 531 |  |  | 29~$\sigma$) periodic boxes.  Notably, there are resonances apparent | 
| 532 |  |  | in the ripple amplitudes at box lengths of 17.3 and 29.5 $\sigma$. | 
| 533 |  |  | For larger systems, the behavior of the ripples appears to have | 
| 534 |  |  | stabilized and is on a trend to slightly smaller amplitudes (and | 
| 535 |  |  | slightly longer wavelengths) than were observed from the 34.3 $\sigma$ | 
| 536 |  |  | box sizes that were used for most of the calculations. | 
| 537 |  |  |  | 
| 538 |  |  | It is interesting to note that system sizes which are multiples of the | 
| 539 |  |  | default ripple wavelength can enhance the amplitude of the observed | 
| 540 |  |  | ripples, but appears to have only a minor effect on the observed | 
| 541 |  |  | wavelength.  It would, of course, be better to use system sizes that | 
| 542 |  |  | were many multiples of the ripple wavelength to be sure that the | 
| 543 |  |  | periodic box is not driving the phenomenon, but at the largest system | 
| 544 |  |  | size studied (70 $\sigma$ $\times$ 70 $\sigma$), the number of dipoles | 
| 545 |  |  | (5440) made long Monte Carlo simulations prohibitively expensive. | 
| 546 |  |  |  | 
| 547 |  |  | \section{Discussion} | 
| 548 |  |  | \label{sec:discussion} | 
| 549 |  |  |  | 
| 550 |  |  | We have been able to show that a simple dipolar lattice model which | 
| 551 |  |  | contains only molecular packing (from the lattice), anisotropy (in the | 
| 552 |  |  | form of electrostatic dipoles) and a weak surface tension (in the form | 
| 553 |  |  | of a nearest-neighbor harmonic potential) is capable of exhibiting | 
| 554 |  |  | stable long-wavelength non-thermal surface corrugations.  The best | 
| 555 |  |  | explanation for this behavior is that the ability of the dipoles to | 
| 556 |  |  | translate out of the plane of the membrane is enough to break the | 
| 557 |  |  | symmetry of the hexagonal lattice and allow the energetic benefit from | 
| 558 |  |  | the formation of a bulk antiferroelectric phase.  Were the weak | 
| 559 |  |  | surface tension absent from our model, it would be possible for the | 
| 560 |  |  | entire lattice to ``tilt'' using $z$-translation.  Tilting the lattice | 
| 561 |  |  | in this way would yield an effectively non-hexagonal lattice which | 
| 562 |  |  | would avoid dipolar frustration altogether.  With the surface tension | 
| 563 |  |  | in place, bulk tilt causes a large strain, and the simplest way to | 
| 564 |  |  | release this strain is along line defects.  Line defects will result | 
| 565 |  |  | in rippled or sawtooth patterns in the membrane, and allow small | 
| 566 |  |  | ``stripes'' of membrane to form antiferroelectric regions that are | 
| 567 |  |  | tilted relative to the averaged membrane normal. | 
| 568 |  |  |  | 
| 569 |  |  | Although the dipole-dipole interaction is the major driving force for | 
| 570 |  |  | the long range orientational ordered state, the formation of the | 
| 571 |  |  | stable, smooth ripples is a result of the competition between the | 
| 572 |  |  | surface tension and the dipole-dipole interactions.  This statement is | 
| 573 |  |  | supported by the variation in $\mu^{*}$.  Substantially weaker dipoles | 
| 574 |  |  | relative to the surface tension can cause the corrugated phase to | 
| 575 |  |  | disappear. | 
| 576 |  |  |  | 
| 577 |  |  | The packing of the dipoles into a nearly-hexagonal lattice is clearly | 
| 578 |  |  | an important piece of the puzzle.  The dipolar head groups of lipid | 
| 579 |  |  | molecules are sterically (as well as electrostatically) anisotropic, | 
| 580 |  |  | and would not be able to pack hexagonally without the steric | 
| 581 |  |  | interference of adjacent molecular bodies.  Since we only see rippled | 
| 582 |  |  | phases in the neighborhood of $\gamma=\sqrt{3}$, this implies that | 
| 583 |  |  | there is a role played by the lipid chains in the organization of the | 
| 584 |  |  | hexagonally ordered phases which support ripples in realistic lipid | 
| 585 |  |  | bilayers. | 
| 586 |  |  |  | 
| 587 |  |  | The most important prediction we can make using the results from this | 
| 588 |  |  | simple model is that if dipolar ordering is driving the surface | 
| 589 |  |  | corrugation, the wave vectors for the ripples should always found to | 
| 590 |  |  | be {\it perpendicular} to the dipole director axis.  This prediction | 
| 591 |  |  | should suggest experimental designs which test whether this is really | 
| 592 |  |  | true in the phosphatidylcholine $P_{\beta'}$ phases.  The dipole | 
| 593 |  |  | director axis should also be easily computable for the all-atom and | 
| 594 |  |  | coarse-grained simulations that have been published in the literature. | 
| 595 |  |  |  | 
| 596 |  |  | Our other observation about the ripple and dipolar directionality is | 
| 597 |  |  | that the dipole director axis can be found to be parallel to any of | 
| 598 |  |  | the three equivalent lattice vectors in the hexagonal lattice. | 
| 599 |  |  | Defects in the ordering of the dipoles can cause the dipole director | 
| 600 |  |  | (and consequently the surface corrugation) of small regions to be | 
| 601 |  |  | rotated relative to each other by 120$^{\circ}$.  This is a similar | 
| 602 |  |  | behavior to the domain rotation seen in the AFM studies of Kaasgaard | 
| 603 |  |  | {\it et al.}\cite{Kaasgaard03} | 
| 604 |  |  |  | 
| 605 |  |  | Although our model is simple, it exhibits some rich and unexpected | 
| 606 |  |  | behaviors.  It would clearly be a closer approximation to the reality | 
| 607 |  |  | if we allowed greater translational freedom to the dipoles and | 
| 608 |  |  | replaced the somewhat artificial lattice packing and the harmonic | 
| 609 |  |  | ``surface tension'' with more realistic molecular modeling | 
| 610 |  |  | potentials.  What we have done is to present an extremely simple model | 
| 611 |  |  | which exhibits bulk non-thermal corrugation, and our explanation of | 
| 612 |  |  | this rippling phenomenon will help us design more accurate molecular | 
| 613 |  |  | models for corrugated membranes and experiments to test whether | 
| 614 |  |  | rippling is dipole-driven or not. | 
| 615 |  |  | \clearpage | 
| 616 |  |  | \bibliography{ripple} | 
| 617 |  |  | \printfigures | 
| 618 |  |  | \end{document} |