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add more citations for NEMD and EMD background info.

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1 %% This BibTeX bibliography file was created using BibDesk.
2 %% http://bibdesk.sourceforge.net/
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5 %% Created for Shenyu Kuang at 2010-04-16 12:38:13 -0400
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10
11
12 @article{hess:209,
13 Author = {Berk Hess},
14 Date-Added = {2010-04-16 12:37:37 -0400},
15 Date-Modified = {2010-04-16 12:37:37 -0400},
16 Doi = {10.1063/1.1421362},
17 Journal = {The Journal of Chemical Physics},
18 Keywords = {viscosity; molecular dynamics method; liquid theory; shear flow},
19 Number = {1},
20 Pages = {209-217},
21 Publisher = {AIP},
22 Title = {Determining the shear viscosity of model liquids from molecular dynamics simulations},
23 Url = {http://link.aip.org/link/?JCP/116/209/1},
24 Volume = {116},
25 Year = {2002},
26 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/116/209/1},
27 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1421362}}
28
29 @article{backer:154503,
30 Author = {J. A. Backer and C. P. Lowe and H. C. J. Hoefsloot and P. D. Iedema},
31 Date-Added = {2010-04-16 12:37:37 -0400},
32 Date-Modified = {2010-04-16 12:37:37 -0400},
33 Doi = {10.1063/1.1883163},
34 Eid = {154503},
35 Journal = {The Journal of Chemical Physics},
36 Keywords = {Poiseuille flow; flow simulation; Lennard-Jones potential; viscosity; boundary layers; computational fluid dynamics},
37 Number = {15},
38 Numpages = {6},
39 Pages = {154503},
40 Publisher = {AIP},
41 Title = {Poiseuille flow to measure the viscosity of particle model fluids},
42 Url = {http://link.aip.org/link/?JCP/122/154503/1},
43 Volume = {122},
44 Year = {2005},
45 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/122/154503/1},
46 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1883163}}
47
48 @article{daivis:541,
49 Author = {Peter J. Daivis and Denis J. Evans},
50 Date-Added = {2010-04-16 12:05:36 -0400},
51 Date-Modified = {2010-04-16 12:05:36 -0400},
52 Doi = {10.1063/1.466970},
53 Journal = {The Journal of Chemical Physics},
54 Keywords = {SHEAR; DECANE; FLOW MODELS; VOLUME; PRESSURE; NONEQUILIBRIUM; MOLECULAR DYNAMICS CALCULATIONS; COMPARATIVE EVALUATIONS; SIMULATION; STRAIN RATE; VISCOSITY; KUBO FORMULA},
55 Number = {1},
56 Pages = {541-547},
57 Publisher = {AIP},
58 Title = {Comparison of constant pressure and constant volume nonequilibrium simulations of sheared model decane},
59 Url = {http://link.aip.org/link/?JCP/100/541/1},
60 Volume = {100},
61 Year = {1994},
62 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/100/541/1},
63 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.466970}}
64
65 @article{mondello:9327,
66 Author = {Maurizio Mondello and Gary S. Grest},
67 Date-Added = {2010-04-16 12:05:36 -0400},
68 Date-Modified = {2010-04-16 12:05:36 -0400},
69 Doi = {10.1063/1.474002},
70 Journal = {The Journal of Chemical Physics},
71 Keywords = {organic compounds; viscosity; digital simulation; molecular dynamics method},
72 Number = {22},
73 Pages = {9327-9336},
74 Publisher = {AIP},
75 Title = {Viscosity calculations of [bold n]-alkanes by equilibrium molecular dynamics},
76 Url = {http://link.aip.org/link/?JCP/106/9327/1},
77 Volume = {106},
78 Year = {1997},
79 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/106/9327/1},
80 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.474002}}
81
82 @article{ISI:A1988Q205300014,
83 Address = {{ONE GUNDPOWDER SQUARE, LONDON, ENGLAND EC4A 3DE}},
84 Affiliation = {{VOGELSANG, R (Reprint Author), RUHR UNIV BOCHUM,UNIV STR 150,D-4630 BOCHUM,FED REP GER. UNIV DUISBURG,THERMODYNAM,D-4100 DUISBURG,FED REP GER.}},
85 Author = {VOGELSANG, R and HOHEISEL, G and LUCKAS, M},
86 Date-Added = {2010-04-14 16:20:24 -0400},
87 Date-Modified = {2010-04-14 16:20:24 -0400},
88 Doc-Delivery-Number = {{Q2053}},
89 Issn = {{0026-8976}},
90 Journal = {{MOLECULAR PHYSICS}},
91 Journal-Iso = {{Mol. Phys.}},
92 Language = {{English}},
93 Month = {{AUG 20}},
94 Number = {{6}},
95 Number-Of-Cited-References = {{14}},
96 Pages = {{1203-1213}},
97 Publisher = {{TAYLOR \& FRANCIS LTD}},
98 Subject-Category = {{Physics, Atomic, Molecular \& Chemical}},
99 Times-Cited = {{12}},
100 Title = {{SHEAR VISCOSITY AND THERMAL-CONDUCTIVITY OF THE LENNARD-JONES LIQUID COMPUTED USING MOLECULAR-DYNAMICS AND PREDICTED BY A MEMORY FUNCTION MODEL FOR A LARGE NUMBER OF STATES}},
101 Type = {{Article}},
102 Unique-Id = {{ISI:A1988Q205300014}},
103 Volume = {{64}},
104 Year = {{1988}}}
105
106 @article{ISI:000261835100054,
107 Abstract = {{Transport properties of liquid methanol and ethanol are predicted by
108 molecular dynamics simulation. The molecular models for the alcohols
109 are rigid, nonpolarizable, and of united-atom type. They were developed
110 in preceding work using experimental vapor-liquid equilibrium data
111 only. Self- and Maxwell-Stefan diffusion coefficients as well as the
112 shear viscosity of methanol, ethanol, and their binary mixture are
113 determined using equilibrium molecular dynamics and the Green-Kubo
114 formalism. Nonequilibrium molecular dynamics is used for predicting the
115 thermal conductivity of the two pure substances. The transport
116 properties of the fluids are calculated over a wide temperature range
117 at ambient pressure and compared with experimental and simulation data
118 from the literature. Overall, a very good agreement with the experiment
119 is found. For instance, the self-diffusion coefficient and the shear
120 viscosity are predicted with average deviations of less than 8\% for
121 the pure alcohols and 12\% for the mixture. The predicted thermal
122 conductivity agrees on average within 5\% with the experimental data.
123 Additionally, some velocity and shear viscosity autocorrelation
124 functions are presented and discussed. Radial distribution functions
125 for ethanol are also presented. The predicted excess volume, excess
126 enthalpy, and the vapor-liquid equilibrium of the binary mixture
127 methanol + ethanol are assessed and agree well with experimental data.}},
128 Address = {{1155 16TH ST, NW, WASHINGTON, DC 20036 USA}},
129 Affiliation = {{Vrabec, J (Reprint Author), Univ Stuttgart, Inst Thermodynam \& Thermal Proc Engn, D-70550 Stuttgart, Germany. {[}Vrabec, Jadran] Univ Stuttgart, Inst Thermodynam \& Thermal Proc Engn, D-70550 Stuttgart, Germany. {[}Guevara-Carrion, Gabriela; Hasse, Hans] Univ Kaiserslautern, Lab Engn Thermodynam, D-67663 Kaiserslautern, Germany. {[}Nieto-Draghi, Carlos] Inst Francais Petr, F-92852 Rueil Malmaison, France.}},
130 Author = {Guevara-Carrion, Gabriela and Nieto-Draghi, Carlos and Vrabec, Jadran and Hasse, Hans},
131 Author-Email = {{vrabec@itt.uni-stuttgart.de}},
132 Date-Added = {2010-04-14 15:43:29 -0400},
133 Date-Modified = {2010-04-14 15:43:29 -0400},
134 Doc-Delivery-Number = {{385SY}},
135 Doi = {{10.1021/jp805584d}},
136 Issn = {{1520-6106}},
137 Journal = {{JOURNAL OF PHYSICAL CHEMISTRY B}},
138 Journal-Iso = {{J. Phys. Chem. B}},
139 Keywords-Plus = {{STEFAN DIFFUSION-COEFFICIENTS; MONTE-CARLO CALCULATIONS; ATOM FORCE-FIELD; SELF-DIFFUSION; DYNAMICS SIMULATION; PHASE-EQUILIBRIA; LIQUID METHANOL; TEMPERATURE-DEPENDENCE; COMPUTER-SIMULATION; MONOHYDRIC ALCOHOLS}},
140 Language = {{English}},
141 Month = {{DEC 25}},
142 Number = {{51}},
143 Number-Of-Cited-References = {{86}},
144 Pages = {{16664-16674}},
145 Publisher = {{AMER CHEMICAL SOC}},
146 Subject-Category = {{Chemistry, Physical}},
147 Times-Cited = {{5}},
148 Title = {{Prediction of Transport Properties by Molecular Simulation: Methanol and Ethanol and Their Mixture}},
149 Type = {{Article}},
150 Unique-Id = {{ISI:000261835100054}},
151 Volume = {{112}},
152 Year = {{2008}},
153 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp805584d%7D}}
154
155 @article{ISI:000258460400020,
156 Abstract = {{Nonequilibrium molecular dynamics simulations with the nonpolarizable
157 SPC/E (Berendsen et al., J. Phys. Chem. 1987, 91, 6269) and the
158 polarizable COS/G2 (Yu and van Gunsteren, J. Chem. Phys. 2004, 121,
159 9549) force fields have been employed to calculate the thermal
160 conductivity and other associated properties of methane hydrate over a
161 temperature range from 30 to 260 K. The calculated results are compared
162 to experimental data over this same range. The values of the thermal
163 conductivity calculated with the COS/G2 model are closer to the
164 experimental values than are those calculated with the nonpolarizable
165 SPC/E model. The calculations match the temperature trend in the
166 experimental data at temperatures below 50 K; however, they exhibit a
167 slight decrease in thermal conductivity at higher temperatures in
168 comparison to an opposite trend in the experimental data. The
169 calculated thermal conductivity values are found to be relatively
170 insensitive to the occupancy of the cages except at low (T <= 50 K)
171 temperatures, which indicates that the differences between the two
172 lattice structures may have a more dominant role than generally thought
173 in explaining the low thermal conductivity of methane hydrate compared
174 to ice Ih. The introduction of defects into the water lattice is found
175 to cause a reduction in the thermal conductivity but to have a
176 negligible impact on its temperature dependence.}},
177 Address = {{1155 16TH ST, NW, WASHINGTON, DC 20036 USA}},
178 Affiliation = {{Jordan, KD (Reprint Author), US DOE, Natl Energy Technol Lab, POB 10940, Pittsburgh, PA 15236 USA. {[}Jiang, Hao; Myshakin, Evgeniy M.; Jordan, Kenneth D.; Warzinski, Robert P.] US DOE, Natl Energy Technol Lab, Pittsburgh, PA 15236 USA. {[}Jiang, Hao; Jordan, Kenneth D.] Univ Pittsburgh, Dept Chem, Pittsburgh, PA 15260 USA. {[}Jiang, Hao; Jordan, Kenneth D.] Univ Pittsburgh, Ctr Mol \& Mat Simulat, Pittsburgh, PA 15260 USA. {[}Myshakin, Evgeniy M.] Parsons Project Serv Inc, South Pk, PA 15129 USA.}},
179 Author = {Jiang, Hao and Myshakin, Evgeniy M. and Jordan, Kenneth D. and Warzinski, Robert P.},
180 Date-Added = {2010-04-14 15:38:14 -0400},
181 Date-Modified = {2010-04-14 15:38:14 -0400},
182 Doc-Delivery-Number = {{337UG}},
183 Doi = {{10.1021/jp802942v}},
184 Funding-Acknowledgement = {{E.M.M. ; National Energy Technology Laboratory's Office of Research and Development {[}41817.660.01.03]; ORISE Part-Time Faculty Program ; {[}DE-AM26-04NT41817]; {[}41817.606.06.03]}},
185 Funding-Text = {{We thank Drs. John Tse, Niall English, and Alan McGaughey for their comments. H.J. and K.D.J. performed this work under Contract DE-AM26-04NT41817, Subtask 41817.606.06.03, and E.M.M. performed this work under the same contract, Subtask 41817.660.01.03, in support of the National Energy Technology Laboratory's Office of Research and Development. K.D.J. was also supported at NETL by the ORISE Part-Time Faculty Program during the early stages of this work.}},
186 Issn = {{1520-6106}},
187 Journal = {{JOURNAL OF PHYSICAL CHEMISTRY B}},
188 Journal-Iso = {{J. Phys. Chem. B}},
189 Keywords-Plus = {{LIQUID WATER; CLATHRATE HYDRATE; HEAT-CAPACITY; FORCE-FIELDS; ICE; ANHARMONICITY; SUMMATION; MODELS; SILICA}},
190 Language = {{English}},
191 Month = {{AUG 21}},
192 Number = {{33}},
193 Number-Of-Cited-References = {{51}},
194 Pages = {{10207-10216}},
195 Publisher = {{AMER CHEMICAL SOC}},
196 Subject-Category = {{Chemistry, Physical}},
197 Times-Cited = {{8}},
198 Title = {{Molecular dynamics Simulations of the thermal conductivity of methane hydrate}},
199 Type = {{Article}},
200 Unique-Id = {{ISI:000258460400020}},
201 Volume = {{112}},
202 Year = {{2008}},
203 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp802942v%7D}}
204
205 @article{ISI:000184808400018,
206 Abstract = {{A new non-equilibrium molecular dynamics algorithm is presented based
207 on the original work of Willer-Plathe, (1997, J. chem. Phys., 106,
208 6082), for the non-equilibrium simulation of heat transport maintaining
209 fixed the total momentum as well as the total energy of the system. The
210 presented scheme preserves these properties but, unlike the original
211 algorithm, is able to deal with multicomponent systems, that is with
212 particles of different mass independently of their relative
213 concentration. The main idea behind the new procedure is to consider an
214 exchange of momentum and energy between the particles in the hot and
215 cold regions, to maintain the non-equilibrium conditions, as if they
216 undergo a hypothetical elastic collision. The new algorithm can also be
217 employed in multicomponent systems for molecular fluids and in a wide
218 range of thermodynamic conditions.}},
219 Address = {{4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND}},
220 Affiliation = {{Nieto-Draghi, C (Reprint Author), Univ Rovira \& Virgili, ETSEQ, Dept Engn Quim, Avda Paisos Catalans 26, Tarragona 43007, Spain. Univ Rovira \& Virgili, ETSEQ, Dept Engn Quim, Tarragona 43007, Spain.}},
221 Author = {Nieto-Draghi, C and Avalos, JB},
222 Date-Added = {2010-04-14 12:48:08 -0400},
223 Date-Modified = {2010-04-14 12:48:08 -0400},
224 Doc-Delivery-Number = {{712QM}},
225 Doi = {{10.1080/0026897031000154338}},
226 Issn = {{0026-8976}},
227 Journal = {{MOLECULAR PHYSICS}},
228 Journal-Iso = {{Mol. Phys.}},
229 Keywords-Plus = {{BINARY-LIQUID MIXTURES; THERMAL-CONDUCTIVITY; MATTER TRANSPORT; WATER}},
230 Language = {{English}},
231 Month = {{JUL 20}},
232 Number = {{14}},
233 Number-Of-Cited-References = {{20}},
234 Pages = {{2303-2307}},
235 Publisher = {{TAYLOR \& FRANCIS LTD}},
236 Subject-Category = {{Physics, Atomic, Molecular \& Chemical}},
237 Times-Cited = {{13}},
238 Title = {{Non-equilibrium momentum exchange algorithm for molecular dynamics simulation of heat flow in multicomponent systems}},
239 Type = {{Article}},
240 Unique-Id = {{ISI:000184808400018}},
241 Volume = {{101}},
242 Year = {{2003}},
243 Bdsk-Url-1 = {http://dx.doi.org/10.1080/0026897031000154338%7D}}
244
245 @article{Bedrov:2000-1,
246 Abstract = {{The thermal conductivity of liquid
247 octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) has been
248 determined from imposed heat flux non-equilibrium molecular dynamics
249 (NEMD) simulations using a previously published quantum chemistry-based
250 atomistic potential. The thermal conductivity was determined in the
251 temperature domain 550 less than or equal to T less than or equal to
252 800 K, which corresponds approximately to the existence limits of the
253 liquid phase of HMX at atmospheric pressure. The NEMD predictions,
254 which comprise the first reported values for thermal conductivity of
255 HMX liquid, were found to be consistent with measured values for
256 crystalline HMX. The thermal conductivity of liquid HMX was found to
257 exhibit a much weaker temperature dependence than the shear viscosity
258 and self-diffusion coefficients. (C) 2000 Elsevier Science B.V. All
259 rights reserved.}},
260 Address = {{PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS}},
261 Affiliation = {{Bedrov, D (Reprint Author), Univ Utah, Dept Mat Sci \& Engn, 122 S Cent Campus Dr,Room 304, Salt Lake City, UT 84112 USA. Univ Utah, Dept Mat Sci \& Engn, Salt Lake City, UT 84112 USA. Univ Utah, Dept Chem \& Fuels Engn, Salt Lake City, UT 84112 USA. Univ Calif Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.}},
262 Author = {Bedrov, D and Smith, GD and Sewell, TD},
263 Date-Added = {2010-04-14 12:26:59 -0400},
264 Date-Modified = {2010-04-14 12:27:52 -0400},
265 Doc-Delivery-Number = {{330PF}},
266 Issn = {{0009-2614}},
267 Journal = {{CHEMICAL PHYSICS LETTERS}},
268 Journal-Iso = {{Chem. Phys. Lett.}},
269 Keywords-Plus = {{FORCE-FIELD}},
270 Language = {{English}},
271 Month = {{JUN 30}},
272 Number = {{1-3}},
273 Number-Of-Cited-References = {{17}},
274 Pages = {{64-68}},
275 Publisher = {{ELSEVIER SCIENCE BV}},
276 Subject-Category = {{Chemistry, Physical; Physics, Atomic, Molecular \& Chemical}},
277 Times-Cited = {{19}},
278 Title = {{Thermal conductivity of liquid octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) from molecular dynamics simulations}},
279 Type = {{Article}},
280 Unique-Id = {{ISI:000087969900011}},
281 Volume = {{324}},
282 Year = {{2000}}}
283
284 @article{ISI:000258840700015,
285 Abstract = {{By using the embedded-atom method (EAM), a series of molecular dynamics
286 (MD) simulations are carried out to calculate the viscosity and
287 self-diffusion coefficient of liquid copper from the normal to the
288 undercooled states. The simulated results are in reasonable agreement
289 with the experimental values available above the melting temperature
290 that is also predicted from a solid-liquid-solid sandwich structure.
291 The relationship between the viscosity and the self-diffusion
292 coefficient is evaluated. It is found that the Stokes-Einstein and
293 Sutherland-Einstein relations qualitatively describe this relationship
294 within the simulation temperature range. However, the predicted
295 constant from MD simulation is close to 1/(3 pi), which is larger than
296 the constants of the Stokes-Einstein and Sutherland-Einstein relations.}},
297 Address = {{233 SPRING ST, NEW YORK, NY 10013 USA}},
298 Affiliation = {{Chen, M (Reprint Author), Tsinghua Univ, Dept Engn Mech, Beijing 100084, Peoples R China. {[}Han, X. J.; Chen, M.; Lue, Y. J.] Tsinghua Univ, Dept Engn Mech, Beijing 100084, Peoples R China.}},
299 Author = {Han, X. J. and Chen, M. and Lue, Y. J.},
300 Author-Email = {{mchen@tsinghua.edu.cn}},
301 Date-Added = {2010-04-14 12:00:38 -0400},
302 Date-Modified = {2010-04-14 12:00:38 -0400},
303 Doc-Delivery-Number = {{343GH}},
304 Doi = {{10.1007/s10765-008-0489-7}},
305 Funding-Acknowledgement = {{China Postdoctoral Science Foundation ; National Natural Science Foundation of China {[}50395101, 50371043]}},
306 Funding-Text = {{This work was financially supported by China Postdoctoral Science Foundation and the National Natural Science Foundation of China under grant Nos. of 50395101 and 50371043. The computations are carried out at the Tsinghua National Laboratory for Information Science and Technology, China. The authors are grateful to Mr. D. Q. Yu for valuable discussions.}},
307 Issn = {{0195-928X}},
308 Journal = {{INTERNATIONAL JOURNAL OF THERMOPHYSICS}},
309 Journal-Iso = {{Int. J. Thermophys.}},
310 Keywords = {{copper; molecular simulation; self-diffusion coefficient; viscosity; undercooled}},
311 Keywords-Plus = {{EMBEDDED-ATOM MODEL; THERMOPHYSICAL PROPERTIES; COMPUTER-SIMULATION; TRANSITION-METALS; SHEAR VISCOSITY; ALLOYS; TEMPERATURE; DIFFUSION; BINDING; SURFACE}},
312 Language = {{English}},
313 Month = {{AUG}},
314 Number = {{4}},
315 Number-Of-Cited-References = {{39}},
316 Pages = {{1408-1421}},
317 Publisher = {{SPRINGER/PLENUM PUBLISHERS}},
318 Subject-Category = {{Thermodynamics; Chemistry, Physical; Mechanics; Physics, Applied}},
319 Times-Cited = {{2}},
320 Title = {{Transport properties of undercooled liquid copper: A molecular dynamics study}},
321 Type = {{Article}},
322 Unique-Id = {{ISI:000258840700015}},
323 Volume = {{29}},
324 Year = {{2008}},
325 Bdsk-Url-1 = {http://dx.doi.org/10.1007/s10765-008-0489-7%7D}}
326
327 @article{Muller-Plathe:2008,
328 Abstract = {{Reverse nonequilibrium molecular dynamics and equilibrium molecular
329 dynamics simulations were carried out to compute the shear viscosity of
330 the pure ionic liquid system {[}bmim]{[}PF6] at 300 K. The two methods
331 yielded consistent results which were also compared to experiments. The
332 results showed that the reverse nonequilibrium molecular dynamics
333 (RNEMD) methodology can successfully be applied to computation of
334 highly viscous ionic liquids. Moreover, this study provides a
335 validation of the atomistic force-field developed by Bhargava and
336 Balasubramanian (J. Chem. Phys. 2007, 127, 114510) for dynamic
337 properties.}},
338 Address = {{1155 16TH ST, NW, WASHINGTON, DC 20036 USA}},
339 Affiliation = {{Wei, Z (Reprint Author), Tech Univ Darmstadt, Petersenstr 30, D-64287 Darmstadt, Germany. {[}Wei Zhao; Leroy, Frederic; Mueller-Plathe, Florian] Tech Univ Darmstadt, D-64287 Darmstadt, Germany. {[}Balasubramanian, Sundaram] Indian Inst Sci, Jawaharlal Nehru Ctr Adv Sci Res, Chem \& Phys Mat Unit, Bangalore 560064, Karnataka, India.}},
340 Author = {Wei Zhao and Leroy, Frederic and Balasubramanian, Sundaram and Mueller-Plathe, Florian},
341 Author-Email = {{w.zhao@theo.chemie.tu-darmstadt.de}},
342 Date-Added = {2010-04-14 11:53:37 -0400},
343 Date-Modified = {2010-04-14 11:54:20 -0400},
344 Doc-Delivery-Number = {{321VS}},
345 Doi = {{10.1021/jp8017869}},
346 Issn = {{1520-6106}},
347 Journal = {{JOURNAL OF PHYSICAL CHEMISTRY B}},
348 Journal-Iso = {{J. Phys. Chem. B}},
349 Keywords-Plus = {{TRANSPORT-PROPERTIES; FORCE-FIELD; TEMPERATURE; SIMULATION; IMIDAZOLIUM; FLUIDS; MODEL; BIS(TRIFLUOROMETHANESULFONYL)IMIDE; PYRIDINIUM; CHLORIDE}},
350 Language = {{English}},
351 Month = {{JUL 10}},
352 Number = {{27}},
353 Number-Of-Cited-References = {{49}},
354 Pages = {{8129-8133}},
355 Publisher = {{AMER CHEMICAL SOC}},
356 Subject-Category = {{Chemistry, Physical}},
357 Times-Cited = {{2}},
358 Title = {{Shear viscosity of the ionic liquid 1-n-butyl 3-methylimidazolium hexafluorophosphate {[}bmim]{[}PF6] computed by reverse nonequilibrium molecular dynamics}},
359 Type = {{Article}},
360 Unique-Id = {{ISI:000257335200022}},
361 Volume = {{112}},
362 Year = {{2008}},
363 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp8017869%7D}}
364
365 @article{Muller-Plathe:2002,
366 Abstract = {{The reverse nonequilibrium molecular dynamics {[}F. Muller-Plathe,
367 Phys. Rev. E 49, 359 (1999)] presented for the calculation of the shear
368 viscosity of Lennard-Jones liquids has been extended to atomistic
369 models of molecular liquids. The method is improved to overcome the
370 problems due to the detailed molecular models. The new technique is
371 besides a test with a Lennard-Jones fluid, applied on different
372 realistic systems: liquid nitrogen, water, and hexane, in order to
373 cover a large range of interactions and systems/architectures. We show
374 that all the advantages of the method itemized previously are still
375 valid, and that it has a very good efficiency and accuracy making it
376 very competitive. (C) 2002 American Institute of Physics.}},
377 Address = {{CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA}},
378 Affiliation = {{Bordat, P (Reprint Author), Max Planck Inst Polymer Res, Ackermannweg 10, D-55128 Mainz, Germany. Max Planck Inst Polymer Res, D-55128 Mainz, Germany.}},
379 Author = {Bordat, P and Muller-Plathe, F},
380 Date-Added = {2010-04-14 11:34:42 -0400},
381 Date-Modified = {2010-04-14 11:35:35 -0400},
382 Doc-Delivery-Number = {{521QV}},
383 Doi = {{10.1063/1.1436124}},
384 Issn = {{0021-9606}},
385 Journal = {{JOURNAL OF CHEMICAL PHYSICS}},
386 Journal-Iso = {{J. Chem. Phys.}},
387 Keywords-Plus = {{TRANSPORT-PROPERTIES; PHYSICAL-PROPERTIES; LIQUID ALKANES; N-HEPTADECANE; SIMULATION; WATER; FLOW; MIXTURES; BUTANE; NITROGEN}},
388 Language = {{English}},
389 Month = {{FEB 22}},
390 Number = {{8}},
391 Number-Of-Cited-References = {{47}},
392 Pages = {{3362-3369}},
393 Publisher = {{AMER INST PHYSICS}},
394 Subject-Category = {{Physics, Atomic, Molecular \& Chemical}},
395 Times-Cited = {{33}},
396 Title = {{The shear viscosity of molecular fluids: A calculation by reverse nonequilibrium molecular dynamics}},
397 Type = {{Article}},
398 Unique-Id = {{ISI:000173853600023}},
399 Volume = {{116}},
400 Year = {{2002}},
401 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1436124%7D}}
402
403 @article{ISI:000207079300006,
404 Abstract = {Non-equilibrium Molecular Dynamics Simulation
405 methods have been used to study the ability of
406 Embedded Atom Method models of the metals copper and
407 gold to reproduce the equilibrium and
408 non-equilibrium behavior of metals at a stationary
409 and at a moving solid/liquid interface. The
410 equilibrium solid/vapor interface was shown to
411 display a simple termination of the bulk until the
412 temperature of the solid reaches approximate to 90\%
413 of the bulk melting point. At and above such
414 temperatures the systems exhibit a surface
415 disodering known as surface melting. Non-equilibrium
416 simulations emulating the action of a picosecond
417 laser on the metal were performed to determine the
418 regrowth velocity. For copper, the action of a 20 ps
419 laser with an absorbed energy of 2-5 mJ/cm(2)
420 produced a regrowth velocity of 83-100 m/s, in
421 reasonable agreement with the value obtained by
422 experiment (>60 m/s). For gold, similar conditions
423 produced a slower regrowth velocity of 63 m/s at an
424 absorbed energy of 5 mJ/cm(2). This is almost a
425 factor of two too low in comparison to experiment
426 (>100 m/s). The regrowth velocities of the metals
427 seems unexpectedly close to experiment considering
428 that the free-electron contribution is ignored in
429 the Embeeded Atom Method models used.},
430 Address = {4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND},
431 Affiliation = {Clancy, P (Reprint Author), Cornell Univ, Sch Chem Engn, Ithaca, NY 14853 USA. {[}Richardson, Clifton F.; Clancy, Paulette] Cornell Univ, Sch Chem Engn, Ithaca, NY 14853 USA.},
432 Author = {Richardson, Clifton F. and Clancy, Paulette},
433 Date-Added = {2010-04-07 11:24:36 -0400},
434 Date-Modified = {2010-04-07 11:24:36 -0400},
435 Doc-Delivery-Number = {V04SY},
436 Issn = {0892-7022},
437 Journal = {MOLECULAR SIMULATION},
438 Journal-Iso = {Mol. Simul.},
439 Keywords = {Non-equilibrium computer simulation; molecular dynamics; crystal growth; Embedded Atom Method models of metals},
440 Language = {English},
441 Number = {5-6},
442 Number-Of-Cited-References = {36},
443 Pages = {335-355},
444 Publisher = {TAYLOR \& FRANCIS LTD},
445 Subject-Category = {Chemistry, Physical; Physics, Atomic, Molecular \& Chemical},
446 Times-Cited = {7},
447 Title = {PICOSECOND LASER PROCESSING OF COPPER AND GOLD: A COMPUTER SIMULATION STUDY},
448 Type = {Article},
449 Unique-Id = {ISI:000207079300006},
450 Volume = {7},
451 Year = {1991}}
452
453 @article{ISI:000167766600035,
454 Abstract = {Molecular dynamics simulations are used to
455 investigate the separation of water films adjacent
456 to a hot metal surface. The simulations clearly show
457 that the water layers nearest the surface overheat
458 and undergo explosive boiling. For thick films, the
459 expansion of the vaporized molecules near the
460 surface forces the outer water layers to move away
461 from the surface. These results are of interest for
462 mass spectrometry of biological molecules, steam
463 cleaning of surfaces, and medical procedures.},
464 Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
465 Affiliation = {Garrison, BJ (Reprint Author), Penn State Univ, Dept Chem, University Pk, PA 16802 USA. Penn State Univ, Dept Chem, University Pk, PA 16802 USA. Penn State Univ, Inst Mat Res, University Pk, PA 16802 USA. Univ Virginia, Dept Mat Sci \& Engn, Charlottesville, VA 22903 USA.},
466 Author = {Dou, YS and Zhigilei, LV and Winograd, N and Garrison, BJ},
467 Date-Added = {2010-03-11 15:32:14 -0500},
468 Date-Modified = {2010-03-11 15:32:14 -0500},
469 Doc-Delivery-Number = {416ED},
470 Issn = {1089-5639},
471 Journal = {J. Phys. Chem. A},
472 Journal-Iso = {J. Phys. Chem. A},
473 Keywords-Plus = {MOLECULAR-DYNAMICS SIMULATIONS; ASSISTED LASER-DESORPTION; FROZEN AQUEOUS-SOLUTIONS; COMPUTER-SIMULATION; ORGANIC-SOLIDS; VELOCITY DISTRIBUTIONS; PARTICLE BOMBARDMENT; MASS-SPECTROMETRY; PHASE EXPLOSION; LIQUID WATER},
474 Language = {English},
475 Month = {MAR 29},
476 Number = {12},
477 Number-Of-Cited-References = {65},
478 Pages = {2748-2755},
479 Publisher = {AMER CHEMICAL SOC},
480 Subject-Category = {Chemistry, Physical; Physics, Atomic, Molecular \& Chemical},
481 Times-Cited = {66},
482 Title = {Explosive boiling of water films adjacent to heated surfaces: A microscopic description},
483 Type = {Article},
484 Unique-Id = {ISI:000167766600035},
485 Volume = {105},
486 Year = {2001}}
487
488 @article{Maginn:2010,
489 Abstract = {The reverse nonequilibrium molecular dynamics
490 (RNEMD) method calculates the shear viscosity of a
491 fluid by imposing a nonphysical exchange of momentum
492 and measuring the resulting shear velocity
493 gradient. In this study we investigate the range of
494 momentum flux values over which RNEMD yields usable
495 (linear) velocity gradients. We find that nonlinear
496 velocity profiles result primarily from gradients in
497 fluid temperature and density. The temperature
498 gradient results from conversion of heat into bulk
499 kinetic energy, which is transformed back into heat
500 elsewhere via viscous heating. An expression is
501 derived to predict the temperature profile resulting
502 from a specified momentum flux for a given fluid and
503 simulation cell. Although primarily bounded above,
504 we also describe milder low-flux limitations. RNEMD
505 results for a Lennard-Jones fluid agree with
506 equilibrium molecular dynamics and conventional
507 nonequilibrium molecular dynamics calculations at
508 low shear, but RNEMD underpredicts viscosity
509 relative to conventional NEMD at high shear.},
510 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
511 Affiliation = {Tenney, CM (Reprint Author), Univ Notre Dame, Dept Chem \& Biomol Engn, 182 Fitzpatrick Hall, Notre Dame, IN 46556 USA. {[}Tenney, Craig M.; Maginn, Edward J.] Univ Notre Dame, Dept Chem \& Biomol Engn, Notre Dame, IN 46556 USA.},
512 Article-Number = {014103},
513 Author = {Tenney, Craig M. and Maginn, Edward J.},
514 Author-Email = {ed@nd.edu},
515 Date-Added = {2010-03-09 13:08:41 -0500},
516 Date-Modified = {2010-04-14 12:51:13 -0400},
517 Doc-Delivery-Number = {542DQ},
518 Doi = {10.1063/1.3276454},
519 Funding-Acknowledgement = {U.S. Department of Energy {[}DE-FG36-08G088020]},
520 Funding-Text = {Support for this work was provided by the U.S. Department of Energy (Grant No. DE-FG36-08G088020)},
521 Issn = {0021-9606},
522 Journal = {J. Chem. Phys.},
523 Journal-Iso = {J. Chem. Phys.},
524 Keywords = {Lennard-Jones potential; molecular dynamics method; Navier-Stokes equations; viscosity},
525 Keywords-Plus = {CURRENT AUTOCORRELATION-FUNCTION; IONIC LIQUID; SIMULATIONS; TEMPERATURE},
526 Language = {English},
527 Month = {JAN 7},
528 Number = {1},
529 Number-Of-Cited-References = {20},
530 Publisher = {AMER INST PHYSICS},
531 Subject-Category = {Physics, Atomic, Molecular \& Chemical},
532 Times-Cited = {0},
533 Title = {Limitations and recommendations for the calculation of shear viscosity using reverse nonequilibrium molecular dynamics},
534 Type = {Article},
535 Unique-Id = {ISI:000273472300004},
536 Volume = {132},
537 Year = {2010},
538 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.3276454}}
539
540 @article{Clancy:1992,
541 Abstract = {The regrowth velocity of a crystal from a melt
542 depends on contributions from the thermal
543 conductivity, heat gradient, and latent heat. The
544 relative contributions of these terms to the
545 regrowth velocity of the pure metals copper and gold
546 during liquid-phase epitaxy are evaluated. These
547 results are used to explain how results from
548 previous nonequilibrium molecular-dynamics
549 simulations using classical potentials are able to
550 predict regrowth velocities that are close to the
551 experimental values. Results from equilibrium
552 molecular dynamics showing the nature of the
553 solid-vapor interface of an
554 embedded-atom-method-modeled Cu57Ni43 alloy at a
555 temperature corresponding to 62\% of the melting
556 point are presented. The regrowth of this alloy
557 following a simulation of a laser-processing
558 experiment is also given, with use of nonequilibrium
559 molecular-dynamics techniques. The thermal
560 conductivity and temperature gradient in the
561 simulation of the alloy are compared to those for
562 the pure metals.},
563 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
564 Affiliation = {CORNELL UNIV,SCH CHEM ENGN,ITHACA,NY 14853.},
565 Author = {Richardson, C.~F. and Clancy, P},
566 Date-Added = {2010-01-12 16:17:33 -0500},
567 Date-Modified = {2010-04-08 17:18:25 -0400},
568 Doc-Delivery-Number = {HX378},
569 Issn = {0163-1829},
570 Journal = {Phys. Rev. B},
571 Journal-Iso = {Phys. Rev. B},
572 Keywords-Plus = {SURFACE SEGREGATION; MOLECULAR-DYNAMICS; TRANSITION-METALS; SOLIDIFICATION; GROWTH; CU; NI},
573 Language = {English},
574 Month = {JUN 1},
575 Number = {21},
576 Number-Of-Cited-References = {24},
577 Pages = {12260-12268},
578 Publisher = {AMERICAN PHYSICAL SOC},
579 Subject-Category = {Physics, Condensed Matter},
580 Times-Cited = {11},
581 Title = {CONTRIBUTION OF THERMAL-CONDUCTIVITY TO THE CRYSTAL-REGROWTH VELOCITY OF EMBEDDED-ATOM-METHOD-MODELED METALS AND METAL-ALLOYS},
582 Type = {Article},
583 Unique-Id = {ISI:A1992HX37800010},
584 Volume = {45},
585 Year = {1992}}
586
587 @article{Bedrov:2000,
588 Abstract = {We have applied a new nonequilibrium molecular
589 dynamics (NEMD) method {[}F. Muller-Plathe,
590 J. Chem. Phys. 106, 6082 (1997)] previously applied
591 to monatomic Lennard-Jones fluids in the
592 determination of the thermal conductivity of
593 molecular fluids. The method was modified in order
594 to be applicable to systems with holonomic
595 constraints. Because the method involves imposing a
596 known heat flux it is particularly attractive for
597 systems involving long-range and many-body
598 interactions where calculation of the microscopic
599 heat flux is difficult. The predicted thermal
600 conductivities of liquid n-butane and water using
601 the imposed-flux NEMD method were found to be in a
602 good agreement with previous simulations and
603 experiment. (C) 2000 American Institute of
604 Physics. {[}S0021-9606(00)50841-1].},
605 Address = {2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA},
606 Affiliation = {Bedrov, D (Reprint Author), Univ Utah, Dept Chem \& Fuels Engn, 122 S Cent Campus Dr,Rm 304, Salt Lake City, UT 84112 USA. Univ Utah, Dept Chem \& Fuels Engn, Salt Lake City, UT 84112 USA. Univ Utah, Dept Mat Sci \& Engn, Salt Lake City, UT 84112 USA.},
607 Author = {Bedrov, D and Smith, GD},
608 Date-Added = {2009-11-05 18:21:18 -0500},
609 Date-Modified = {2010-04-14 11:50:48 -0400},
610 Doc-Delivery-Number = {369BF},
611 Issn = {0021-9606},
612 Journal = {J. Chem. Phys.},
613 Journal-Iso = {J. Chem. Phys.},
614 Keywords-Plus = {EFFECTIVE PAIR POTENTIALS; TRANSPORT-PROPERTIES; CANONICAL ENSEMBLE; NORMAL-BUTANE; ALGORITHMS; SHAKE; WATER},
615 Language = {English},
616 Month = {NOV 8},
617 Number = {18},
618 Number-Of-Cited-References = {26},
619 Pages = {8080-8084},
620 Publisher = {AMER INST PHYSICS},
621 Subject-Category = {Physics, Atomic, Molecular \& Chemical},
622 Times-Cited = {23},
623 Title = {Thermal conductivity of molecular fluids from molecular dynamics simulations: Application of a new imposed-flux method},
624 Type = {Article},
625 Unique-Id = {ISI:000090151400044},
626 Volume = {113},
627 Year = {2000}}
628
629 @article{ISI:000231042800044,
630 Abstract = {The reverse nonequilibrium molecular dynamics
631 method for thermal conductivities is adapted to the
632 investigation of molecular fluids. The method
633 generates a heat flux through the system by suitably
634 exchanging velocities of particles located in
635 different regions. From the resulting temperature
636 gradient, the thermal conductivity is then
637 calculated. Different variants of the algorithm and
638 their combinations with other system parameters are
639 tested: exchange of atomic velocities versus
640 exchange of molecular center-of-mass velocities,
641 different exchange frequencies, molecular models
642 with bond constraints versus models with flexible
643 bonds, united-atom versus all-atom models, and
644 presence versus absence of a thermostat. To help
645 establish the range of applicability, the algorithm
646 is tested on different models of benzene,
647 cyclohexane, water, and n-hexane. We find that the
648 algorithm is robust and that the calculated thermal
649 conductivities are insensitive to variations in its
650 control parameters. The force field, in contrast,
651 has a major influence on the value of the thermal
652 conductivity. While calculated and experimental
653 thermal conductivities fall into the same order of
654 magnitude, in most cases the calculated values are
655 systematically larger. United-atom force fields seem
656 to do better than all-atom force fields, possibly
657 because they remove high-frequency degrees of
658 freedom from the simulation, which, in nature, are
659 quantum-mechanical oscillators in their ground state
660 and do not contribute to heat conduction.},
661 Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
662 Affiliation = {Zhang, MM (Reprint Author), Int Univ Bremen, POB 750 561, D-28725 Bremen, Germany. Int Univ Bremen, D-28725 Bremen, Germany. Banco Cent Brasil, Desup, Diesp, BR-01310922 Sao Paulo, Brazil.},
663 Author = {Zhang, MM and Lussetti, E and de Souza, LES and M\"{u}ller-Plathe, F},
664 Date-Added = {2009-11-05 18:17:33 -0500},
665 Date-Modified = {2009-11-05 18:17:33 -0500},
666 Doc-Delivery-Number = {952YQ},
667 Doi = {10.1021/jp0512255},
668 Issn = {1520-6106},
669 Journal = {J. Phys. Chem. B},
670 Journal-Iso = {J. Phys. Chem. B},
671 Keywords-Plus = {LENNARD-JONES LIQUIDS; TRANSPORT-COEFFICIENTS; SWOLLEN POLYMERS; SHEAR VISCOSITY; MODEL SYSTEMS; SIMULATION; BENZENE; FLUIDS; POTENTIALS; DIFFUSION},
672 Language = {English},
673 Month = {AUG 11},
674 Number = {31},
675 Number-Of-Cited-References = {42},
676 Pages = {15060-15067},
677 Publisher = {AMER CHEMICAL SOC},
678 Subject-Category = {Chemistry, Physical},
679 Times-Cited = {17},
680 Title = {Thermal conductivities of molecular liquids by reverse nonequilibrium molecular dynamics},
681 Type = {Article},
682 Unique-Id = {ISI:000231042800044},
683 Volume = {109},
684 Year = {2005},
685 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp0512255%7D}}
686
687 @article{ISI:A1997YC32200056,
688 Abstract = {Equilibrium molecular dynamics simulations have
689 been carried out in the microcanonical ensemble at
690 300 and 255 K on the extended simple point charge
691 (SPC/E) model of water {[}Berendsen et al.,
692 J. Phys. Chem. 91, 6269 (1987)]. In addition to a
693 number of static and dynamic properties, thermal
694 conductivity lambda has been calculated via
695 Green-Kubo integration of the heat current time
696 correlation functions (CF's) in the atomic and
697 molecular formalism, at wave number k=0. The
698 calculated values (0.67 +/- 0.04 W/mK at 300 K and
699 0.52 +/- 0.03 W/mK at 255 K) are in good agreement
700 with the experimental data (0.61 W/mK at 300 K and
701 0.49 W/mK at 255 K). A negative long-time tail of
702 the heat current CF, more apparent at 255 K, is
703 responsible for the anomalous decrease of lambda
704 with temperature. An analysis of the dynamical modes
705 contributing to lambda has shown that its value is
706 due to two low-frequency exponential-like modes, a
707 faster collisional mode, with positive contribution,
708 and a slower one, which determines the negative
709 long-time tail. A comparison of the molecular and
710 atomic spectra of the heat current CF has suggested
711 that higher-frequency modes should not contribute to
712 lambda in this temperature range. Generalized
713 thermal diffusivity D-T(k) decreases as a function
714 of k, after an initial minor increase at k =
715 k(min). The k dependence of the generalized
716 thermodynamic properties has been calculated in the
717 atomic and molecular formalisms. The observed
718 differences have been traced back to intramolecular
719 or intermolecular rotational effects and related to
720 the partial structure functions. Finally, from the
721 results we calculated it appears that the SPC/E
722 model gives results in better agreement with
723 experimental data than the transferable
724 intermolecular potential with four points TIP4P
725 water model {[}Jorgensen et al., J. Chem. Phys. 79,
726 926 (1983)], with a larger improvement for, e.g.,
727 diffusion, viscosities, and dielectric properties
728 and a smaller one for thermal conductivity. The
729 SPC/E model shares, to a smaller extent, the
730 insufficient slowing down of dynamics at low
731 temperature already found for the TIP4P water
732 model.},
733 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
734 Affiliation = {UNIV PISA,DIPARTIMENTO CHIM \& CHIM IND,I-56126 PISA,ITALY. CNR,IST FIS ATOM \& MOL,I-56127 PISA,ITALY.},
735 Author = {Bertolini, D and Tani, A},
736 Date-Added = {2009-10-30 15:41:21 -0400},
737 Date-Modified = {2009-10-30 15:41:21 -0400},
738 Doc-Delivery-Number = {YC322},
739 Issn = {1063-651X},
740 Journal = {Phys. Rev. E},
741 Journal-Iso = {Phys. Rev. E},
742 Keywords-Plus = {TIME-CORRELATION-FUNCTIONS; LENNARD-JONES LIQUID; TRANSPORT-PROPERTIES; SUPERCOOLED WATER; DENSITY; SIMULATIONS; RELAXATION; VELOCITY; ELECTRON; FLUIDS},
743 Language = {English},
744 Month = {OCT},
745 Number = {4},
746 Number-Of-Cited-References = {35},
747 Pages = {4135-4151},
748 Publisher = {AMERICAN PHYSICAL SOC},
749 Subject-Category = {Physics, Fluids \& Plasmas; Physics, Mathematical},
750 Times-Cited = {18},
751 Title = {Thermal conductivity of water: Molecular dynamics and generalized hydrodynamics results},
752 Type = {Article},
753 Unique-Id = {ISI:A1997YC32200056},
754 Volume = {56},
755 Year = {1997}}
756
757 @article{Meineke:2005gd,
758 Abstract = {OOPSE is a new molecular dynamics simulation program
759 that is capable of efficiently integrating equations
760 of motion for atom types with orientational degrees
761 of freedom (e.g. #sticky# atoms and point
762 dipoles). Transition metals can also be simulated
763 using the embedded atom method (EAM) potential
764 included in the code. Parallel simulations are
765 carried out using the force-based decomposition
766 method. Simulations are specified using a very
767 simple C-based meta-data language. A number of
768 advanced integrators are included, and the basic
769 integrator for orientational dynamics provides
770 substantial improvements over older quaternion-based
771 schemes.},
772 Address = {111 RIVER ST, HOBOKEN, NJ 07030 USA},
773 Author = {Meineke, M. A. and Vardeman, C. F. and Lin, T and Fennell, CJ and Gezelter, J. D.},
774 Date-Added = {2009-10-01 18:43:03 -0400},
775 Date-Modified = {2010-04-13 09:11:16 -0400},
776 Doi = {DOI 10.1002/jcc.20161},
777 Isi = {000226558200006},
778 Isi-Recid = {142688207},
779 Isi-Ref-Recids = {67885400 50663994 64190493 93668415 46699855 89992422 57614458 49016001 61447131 111114169 68770425 52728075 102422498 66381878 32391149 134477335 53221357 9929643 59492217 69681001 99223832 142688208 94600872 91658572 54857943 117365867 69323123 49588888 109970172 101670714 142688209 121603296 94652379 96449138 99938010 112825758 114905670 86802042 121339042 104794914 82674909 72096791 93668384 90513335 142688210 23060767 63731466 109033408 76303716 31384453 97861662 71842426 130707771 125809946 66381889 99676497},
780 Journal = {J. Comp. Chem.},
781 Keywords = {OOPSE; molecular dynamics},
782 Month = feb,
783 Number = {3},
784 Pages = {252-271},
785 Publisher = {JOHN WILEY \& SONS INC},
786 Times-Cited = {9},
787 Title = {OOPSE: An object-oriented parallel simulation engine for molecular dynamics},
788 Volume = {26},
789 Year = {2005},
790 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000226558200006},
791 Bdsk-Url-2 = {http://dx.doi.org/10.1002/jcc.20161}}
792
793 @article{ISI:000080382700030,
794 Abstract = {A nonequilibrium method for calculating the shear
795 viscosity is presented. It reverses the
796 cause-and-effect picture customarily used in
797 nonequilibrium molecular dynamics: the effect, the
798 momentum flux or stress, is imposed, whereas the
799 cause, the velocity gradient or shear rate, is
800 obtained from the simulation. It differs from other
801 Norton-ensemble methods by the way in which the
802 steady-state momentum flux is maintained. This
803 method involves a simple exchange of particle
804 momenta, which is easy to implement. Moreover, it
805 can be made to conserve the total energy as well as
806 the total linear momentum, so no coupling to an
807 external temperature bath is needed. The resulting
808 raw data, the velocity profile, is a robust and
809 rapidly converging property. The method is tested on
810 the Lennard-Jones fluid near its triple point. It
811 yields a viscosity of 3.2-3.3, in Lennard-Jones
812 reduced units, in agreement with literature
813 results. {[}S1063-651X(99)03105-0].},
814 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
815 Affiliation = {Muller-Plathe, F (Reprint Author), Max Planck Inst Polymerforsch, Ackermannweg 10, D-55128 Mainz, Germany. Max Planck Inst Polymerforsch, D-55128 Mainz, Germany.},
816 Author = {M\"{u}ller-Plathe, F},
817 Date-Added = {2009-10-01 14:07:30 -0400},
818 Date-Modified = {2009-10-01 14:07:30 -0400},
819 Doc-Delivery-Number = {197TX},
820 Issn = {1063-651X},
821 Journal = {Phys. Rev. E},
822 Journal-Iso = {Phys. Rev. E},
823 Language = {English},
824 Month = {MAY},
825 Number = {5, Part A},
826 Number-Of-Cited-References = {17},
827 Pages = {4894-4898},
828 Publisher = {AMERICAN PHYSICAL SOC},
829 Subject-Category = {Physics, Fluids \& Plasmas; Physics, Mathematical},
830 Times-Cited = {57},
831 Title = {Reversing the perturbation in nonequilibrium molecular dynamics: An easy way to calculate the shear viscosity of fluids},
832 Type = {Article},
833 Unique-Id = {ISI:000080382700030},
834 Volume = {59},
835 Year = {1999}}
836
837 @article{Maginn:2007,
838 Abstract = {Atomistic simulations are conducted to examine the
839 dependence of the viscosity of
840 1-ethyl-3-methylimidazolium
841 bis(trifluoromethanesulfonyl)imide on temperature
842 and water content. A nonequilibrium molecular
843 dynamics procedure is utilized along with an
844 established fixed charge force field. It is found
845 that the simulations quantitatively capture the
846 temperature dependence of the viscosity as well as
847 the drop in viscosity that occurs with increasing
848 water content. Using mixture viscosity models, we
849 show that the relative drop in viscosity with water
850 content is actually less than that that would be
851 predicted for an ideal system. This finding is at
852 odds with the popular notion that small amounts of
853 water cause an unusually large drop in the viscosity
854 of ionic liquids. The simulations suggest that, due
855 to preferential association of water with anions and
856 the formation of water clusters, the excess molar
857 volume is negative. This means that dissolved water
858 is actually less effective at lowering the viscosity
859 of these mixtures when compared to a solute obeying
860 ideal mixing behavior. The use of a nonequilibrium
861 simulation technique enables diffusive behavior to
862 be observed on the time scale of the simulations,
863 and standard equilibrium molecular dynamics resulted
864 in sub-diffusive behavior even over 2 ns of
865 simulation time.},
866 Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
867 Affiliation = {Maginn, EJ (Reprint Author), Univ Notre Dame, Dept Chem \& Biomol Engn, 182 Fitzpatrick Hall, Notre Dame, IN 46556 USA. Univ Notre Dame, Dept Chem \& Biomol Engn, Notre Dame, IN 46556 USA.},
868 Author = {Kelkar, Manish S. and Maginn, Edward J.},
869 Author-Email = {ed@nd.edu},
870 Date-Added = {2009-09-29 17:07:17 -0400},
871 Date-Modified = {2010-04-14 12:51:02 -0400},
872 Doc-Delivery-Number = {163VA},
873 Doi = {10.1021/jp0686893},
874 Issn = {1520-6106},
875 Journal = {J. Phys. Chem. B},
876 Journal-Iso = {J. Phys. Chem. B},
877 Keywords-Plus = {MOLECULAR-DYNAMICS SIMULATION; MOMENTUM IMPULSE RELAXATION; FORCE-FIELD; TRANSPORT-PROPERTIES; PHYSICAL-PROPERTIES; SIMPLE FLUID; CHLORIDE; MODEL; SALTS; ARCHITECTURE},
878 Language = {English},
879 Month = {MAY 10},
880 Number = {18},
881 Number-Of-Cited-References = {57},
882 Pages = {4867-4876},
883 Publisher = {AMER CHEMICAL SOC},
884 Subject-Category = {Chemistry, Physical},
885 Times-Cited = {35},
886 Title = {Effect of temperature and water content on the shear viscosity of the ionic liquid 1-ethyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide as studied by atomistic simulations},
887 Type = {Article},
888 Unique-Id = {ISI:000246190100032},
889 Volume = {111},
890 Year = {2007},
891 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp0686893%7D},
892 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp0686893}}
893
894 @article{MullerPlathe:1997xw,
895 Abstract = {A nonequilibrium molecular dynamics method for
896 calculating the thermal conductivity is
897 presented. It reverses the usual cause and effect
898 picture. The ''effect,'' the heat flux, is imposed
899 on the system and the ''cause,'' the temperature
900 gradient is obtained from the simulation. Besides
901 being very simple to implement, the scheme offers
902 several advantages such as compatibility with
903 periodic boundary conditions, conservation of total
904 energy and total linear momentum, and the sampling
905 of a rapidly converging quantity (temperature
906 gradient) rather than a slowly converging one (heat
907 flux). The scheme is tested on the Lennard-Jones
908 fluid. (C) 1997 American Institute of Physics.},
909 Address = {WOODBURY},
910 Author = {M\"{u}ller-Plathe, F.},
911 Cited-Reference-Count = {13},
912 Date = {APR 8},
913 Date-Added = {2009-09-21 16:51:21 -0400},
914 Date-Modified = {2009-09-21 16:51:21 -0400},
915 Document-Type = {Article},
916 Isi = {ISI:A1997WR62000032},
917 Isi-Document-Delivery-Number = {WR620},
918 Iso-Source-Abbreviation = {J. Chem. Phys.},
919 Issn = {0021-9606},
920 Journal = {J. Chem. Phys.},
921 Language = {English},
922 Month = {Apr},
923 Number = {14},
924 Page-Count = {4},
925 Pages = {6082--6085},
926 Publication-Type = {J},
927 Publisher = {AMER INST PHYSICS},
928 Publisher-Address = {CIRCULATION FULFILLMENT DIV, 500 SUNNYSIDE BLVD, WOODBURY, NY 11797-2999},
929 Reprint-Address = {MullerPlathe, F, MAX PLANCK INST POLYMER RES, D-55128 MAINZ, GERMANY.},
930 Source = {J CHEM PHYS},
931 Subject-Category = {Physics, Atomic, Molecular & Chemical},
932 Times-Cited = {106},
933 Title = {A simple nonequilibrium molecular dynamics method for calculating the thermal conductivity},
934 Volume = {106},
935 Year = {1997}}
936
937 @article{Muller-Plathe:1999ek,
938 Abstract = {A novel non-equilibrium method for calculating
939 transport coefficients is presented. It reverses the
940 experimental cause-and-effect picture, e.g. for the
941 calculation of viscosities: the effect, the momentum
942 flux or stress, is imposed, whereas the cause, the
943 velocity gradient or shear rates, is obtained from
944 the simulation. It differs from other
945 Norton-ensemble methods by the way, in which the
946 steady-state fluxes are maintained. This method
947 involves a simple exchange of particle momenta,
948 which is easy to implement and to analyse. Moreover,
949 it can be made to conserve the total energy as well
950 as the total linear momentum, so no thermostatting
951 is needed. The resulting raw data are robust and
952 rapidly converging. The method is tested on the
953 calculation of the shear viscosity, the thermal
954 conductivity and the Soret coefficient (thermal
955 diffusion) for the Lennard-Jones (LJ) fluid near its
956 triple point. Possible applications to other
957 transport coefficients and more complicated systems
958 are discussed. (C) 1999 Elsevier Science Ltd. All
959 rights reserved.},
960 Address = {THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND},
961 Author = {M\"{u}ller-Plathe, F and Reith, D},
962 Date-Added = {2009-09-21 16:47:07 -0400},
963 Date-Modified = {2009-09-21 16:47:07 -0400},
964 Isi = {000082266500004},
965 Isi-Recid = {111564960},
966 Isi-Ref-Recids = {64516210 89773595 53816621 60134000 94875498 60964023 90228608 85968509 86405859 63979644 108048497 87560156 577165 103281654 111564961 83735333 99953572 88476740 110174781 111564963 6599000 75892253},
967 Journal = {Computational and Theoretical Polymer Science},
968 Keywords = {viscosity; Ludwig-Soret effect; thermal conductivity; Onsager coefficents; non-equilibrium molecular dynamics},
969 Number = {3-4},
970 Pages = {203-209},
971 Publisher = {ELSEVIER SCI LTD},
972 Times-Cited = {15},
973 Title = {Cause and effect reversed in non-equilibrium molecular dynamics: an easy route to transport coefficients},
974 Volume = {9},
975 Year = {1999},
976 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000082266500004}}
977
978 @article{Viscardy:2007lq,
979 Abstract = {The thermal conductivity is calculated with the
980 Helfand-moment method in the Lennard-Jones fluid
981 near the triple point. The Helfand moment of thermal
982 conductivity is here derived for molecular dynamics
983 with periodic boundary conditions. Thermal
984 conductivity is given by a generalized Einstein
985 relation with this Helfand moment. The authors
986 compute thermal conductivity by this new method and
987 compare it with their own values obtained by the
988 standard Green-Kubo method. The agreement is
989 excellent. (C) 2007 American Institute of Physics.},
990 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
991 Author = {Viscardy, S. and Servantie, J. and Gaspard, P.},
992 Date-Added = {2009-09-21 16:37:20 -0400},
993 Date-Modified = {2009-09-21 16:37:20 -0400},
994 Doi = {DOI 10.1063/1.2724821},
995 Isi = {000246453900035},
996 Isi-Recid = {156192451},
997 Isi-Ref-Recids = {18794442 84473620 156192452 41891249 90040203 110174972 59859940 47256160 105716249 91804339 93329429 95967319 6199670 1785176 105872066 6325196 65361295 71941152 4307928 23120502 54053395 149068110 4811016 99953572 59859908 132156782 156192449},
998 Journal = {J. Chem. Phys.},
999 Month = may,
1000 Number = {18},
1001 Publisher = {AMER INST PHYSICS},
1002 Times-Cited = {3},
1003 Title = {Transport and Helfand moments in the Lennard-Jones fluid. II. Thermal conductivity},
1004 Volume = {126},
1005 Year = {2007},
1006 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000246453900035},
1007 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.2724821}}
1008
1009 @article{Viscardy:2007bh,
1010 Abstract = {The authors propose a new method, the Helfand-moment
1011 method, to compute the shear viscosity by
1012 equilibrium molecular dynamics in periodic
1013 systems. In this method, the shear viscosity is
1014 written as an Einstein-type relation in terms of the
1015 variance of the so-called Helfand moment. This
1016 quantity is modified in order to satisfy systems
1017 with periodic boundary conditions usually considered
1018 in molecular dynamics. They calculate the shear
1019 viscosity in the Lennard-Jones fluid near the triple
1020 point thanks to this new technique. They show that
1021 the results of the Helfand-moment method are in
1022 excellent agreement with the results of the standard
1023 Green-Kubo method. (C) 2007 American Institute of
1024 Physics.},
1025 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
1026 Author = {Viscardy, S. and Servantie, J. and Gaspard, P.},
1027 Date-Added = {2009-09-21 16:37:19 -0400},
1028 Date-Modified = {2009-09-21 16:37:19 -0400},
1029 Doi = {DOI 10.1063/1.2724820},
1030 Isi = {000246453900034},
1031 Isi-Recid = {156192449},
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1033 Journal = {J. Chem. Phys.},
1034 Month = may,
1035 Number = {18},
1036 Publisher = {AMER INST PHYSICS},
1037 Times-Cited = {1},
1038 Title = {Transport and Helfand moments in the Lennard-Jones fluid. I. Shear viscosity},
1039 Volume = {126},
1040 Year = {2007},
1041 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000246453900034},
1042 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.2724820}}