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root/group/trunk/nanorodBuilder/nanorodBuilder.xcode/charles.pbxuser
Revision: 2148
Committed: Wed Apr 6 16:34:09 2005 UTC (20 years, 7 months ago) by chuckv
File size: 43566 byte(s)
Log Message: 
Initial import of nanorod builder.

File Contents

# User Rev Content
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572     name = "/*\n * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.\n *\n * The University of Notre Dame grants you (\"Licensee\") a\n * non-exclusive, royalty free, license to use, modify and\n * redistribute this software in source and binary code form, provided\n * that the following conditions are met:\n *\n * 1. Acknowledgement of the program authors must be made in any\n * publication of scientific results based in part on use of the\n * program. An acceptable form of acknowledgement is citation of\n * the article in which the program was described (Matthew\n * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher\n * J. Fennell and J. Daniel Gezelter, \"OOPSE: An Object-Oriented\n * Parallel Simulation Engine for Molecular Dynamics,\"\n * J. Comput. Chem. 26, pp. 252-271 (2005))\n *\n * 2. Redistributions of source code must retain the above copyright\n * notice, this list of conditions and the following disclaimer.\n *\n * 3. Redistributions in binary form must reproduce the above copyright\n * notice, this list of conditions and the following disclaimer in the\n * documentation and/or other materials provided with the\n * distribution.\n *\n * This software is provided \"AS IS,\" without a warranty of any\n * kind. All express or implied conditions, representations and\n * warranties, including any implied warranty of merchantability,\n * fitness for a particular purpose or non-infringement, are hereby\n * excluded. The University of Notre Dame and its licensors shall not\n * be liable for any damages suffered by licensee as a result of\n * using, modifying or distributing the software or its\n * derivatives. In no event will the University of Notre Dame or its\n * licensors be liable for any lost revenue, profit or data, or for\n * direct, indirect, special, consequential, incidental or punitive\n * damages, however caused and regardless of the theory of liability,\n * arising out of the use of or inability to use software, even if the\n * University of Notre Dame has been advised of the possibility of\n * such damages.\n */\n";
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592     name = "#include <CGAL/Simple_cartesian.h>\n#include <CGAL/Polyhedron_incremental_builder_3.h>\n#include <CGAL/Polyhedron_3.h>\n#include <CGAL/Homogeneous.h>\n#include <CGAL/Polyhedron_traits_with_normals_3.h>\n#include <CGAL/Polyhedron_3.h>\n#include <CGAL/Aff_transformation_3.h>\n#include <CGAL/aff_transformation_tags.h>\n#include <iostream>\n#include <algorithm>\n\n\n\n\n\n//typedef CGAL::Homogeneous<int> Kernel;\ntypedef CGAL::Simple_cartesian<double> Kernel;\n//typedef CGAL::Polyhedron_3<Kernel> Polyhedron;\n\ntypedef Kernel::Point_3 Point_3;\ntypedef Kernel::Vector_3 Vector_3;\ntypedef CGAL::Polyhedron_traits_with_normals_3<Kernel> Traits;\n//typedef CGAL::Polyhedron_3<Kernel> Polyhedron;\ntypedef CGAL::Polyhedron_3<Traits> Polyhedron;\ntypedef Polyhedron::HalfedgeDS HalfedgeDS;\ntypedef Polyhedron::Facet_iterator Facet_iterator;\ntypedef Polyhedron::Halfedge_around_facet_circulator Halfedge_facet_circulator;\ntypedef Polyhedron::Facet_iterator Facet_iterator;\ntypedef Polyhedron::Plane_iterator Plane_iterator;\ntypedef Polyhedron::Vertex_handle Vertex_handle;\n//typedef CGAL::Scaling Scaling;\n//typedef Aff_transformation_3<Kernel> A;( const Scaling,\n//\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tKernel::RT s=RT(20),\n//\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tKernel::RT hw = RT(1));\n\n// A modifier creating a triangle with the incremental builder.\ntemplate <class HDS>\nclass Build_nanorod : public CGAL::Modifier_base<HDS> {\npublic:\n Vertex_handle end1;\n Vertex_handle neight1;\n\t\tVertex_handle end2;\n Vertex_handle neight2;\n \n Build_nanorod() {}\n void operator()( HDS& hds) {\n // Postcondition: `hds' is a valid polyhedral surface.\n CGAL::Polyhedron_incremental_builder_3<HDS> B( hds, true);\n B.begin_surface( 12, 15, 6);\n typedef typename HDS::Vertex Vertex;\n typedef typename Vertex::Point Point;\n \n \n \n \n \n B.add_vertex( Point(-0.7887222926324, 0.4874571845315, -0.2562714077342));\n B.add_vertex( Point(-0.4874571845316, 0.4874571845315, 0.6709272557930));\n B.add_vertex( Point(-0.7887222926324, -0.4874571845315, -0.2562714077342)); //End vertex\n end1 = B.add_vertex( Point( 0.0000000000000, 1.0000000000000, 0.0000000000000));\n B.add_vertex( Point(-0.4874571845315, -0.4874571845316, 0.6709272557930));\n neight1 = B.add_vertex( Point(-0.0000000000000, 0.4874571845316, -0.8293116961175));\n B.add_vertex( Point( 0.0000000000000, -0.4874571845316, -0.8293116961175));\n B.add_vertex( Point( 0.4874571845315, 0.4874571845316, 0.6709272557930));\n end2 = B.add_vertex( Point(-0.0000000000000, -1.0000000000000, 0.0000000000000)); //End Vertex\n B.add_vertex( Point( 0.7887222926324, 0.4874571845315, -0.2562714077342));\n neight2 = B.add_vertex( Point( 0.4874571845316, -0.4874571845315, 0.6709272557930));\n B.add_vertex( Point( 0.7887222926324, -0.4874571845315, -0.2562714077342));\n \n B.begin_facet();\n B.add_vertex_to_facet( 7);\n B.add_vertex_to_facet( 9);\n B.add_vertex_to_facet( 11);\n B.add_vertex_to_facet( 10);\n B.end_facet();\n\t\t\t\t\n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 10);\n B.add_vertex_to_facet( 11);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 9);\n B.add_vertex_to_facet( 7);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 9);\n B.add_vertex_to_facet( 5);\n B.add_vertex_to_facet( 6);\n B.add_vertex_to_facet( 11);\n B.end_facet();\n\t\t\t\t\n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 11);\n B.add_vertex_to_facet( 6);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 5);\n B.add_vertex_to_facet( 9);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 5);\n B.add_vertex_to_facet( 0);\n B.add_vertex_to_facet( 2);\n B.add_vertex_to_facet( 6);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 6);\n B.add_vertex_to_facet( 2);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 0);\n B.add_vertex_to_facet( 5);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 0);\n B.add_vertex_to_facet( 1);\n B.add_vertex_to_facet( 4);\n B.add_vertex_to_facet( 2);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 2);\n B.add_vertex_to_facet( 4);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 1);\n B.add_vertex_to_facet( 0);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 1);\n B.add_vertex_to_facet( 7);\n B.add_vertex_to_facet( 10);\n B.add_vertex_to_facet( 4);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 4);\n B.add_vertex_to_facet( 10);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 7);\n B.add_vertex_to_facet( 1);\n B.end_facet();\n \n\t\t\t\t\n B.end_surface();\n }\n};\n\n\n\n// A modifier creating a triangle with the incremental builder.\ntemplate <class HDS>\nclass BuildNanorodInterior : public CGAL::Modifier_base<HDS> {\npublic:\n Vertex_handle end1;\n Vertex_handle neight1;\n Vertex_handle end2;\n Vertex_handle neight2;\n \n BuildNanorodInterior() {}\n void operator()( HDS& hds) {\n // Postcondition: `hds' is a valid polyhedral surface.\n CGAL::Polyhedron_incremental_builder_3<HDS> B( hds, true);\n B.begin_surface( 12, 15, 6);\n typedef typename HDS::Vertex Vertex;\n typedef typename Vertex::Point Point;\n \n /*\n \n B.add_vertex( Point(-0.7887222926324, -0.4874571845315, -0.2562714077342)); //1\n B.add_vertex( Point(-0.7887222926324, 0.4874571845315, -0.2562714077342)); //1\n B.add_vertex( Point(-0.4874571845315, -0.4874571845316, 0.6709272557930)); //2\n B.add_vertex( Point(-0.4874571845316, 0.4874571845315, 0.6709272557930));\n end2 = B.add_vertex( Point(-0.0000000000000, -1.0000000000000, 0.0000000000000)); //End Vertex\n B.add_vertex( Point( 0.0000000000000, -0.4874571845316, -0.8293116961175));\n neight1 = B.add_vertex( Point(-0.0000000000000, 0.4874571845316, -0.8293116961175));\n end1 = B.add_vertex( Point( 0.0000000000000, 1.0000000000000, 0.0000000000000)); //End vertex\n neight2 = B.add_vertex( Point( 0.4874571845316, -0.4874571845315, 0.6709272557930));\n B.add_vertex( Point( 0.4874571845315, 0.4874571845316, 0.6709272557930));\n B.add_vertex( Point( 0.7887222926324, -0.4874571845315, -0.2562714077342));\n B.add_vertex( Point( 0.7887222926324, 0.4874571845315, -0.2562714077342));\n */\n \n B.add_vertex( Point(-0.7887222926324, 0.4874571845315, -0.2562714077342));\n B.add_vertex( Point(-0.4874571845316, 0.4874571845315, 0.6709272557930));\n B.add_vertex( Point(-0.7887222926324, -0.4874571845315, -0.2562714077342)); //End vertex\n end1 = B.add_vertex( Point( 0.0000000000000, 1.0000000000000, 0.0000000000000));\n B.add_vertex( Point(-0.4874571845315, -0.4874571845316, 0.6709272557930));\n neight1 = B.add_vertex( Point(-0.0000000000000, 0.4874571845316, -0.8293116961175));\n B.add_vertex( Point( 0.0000000000000, -0.4874571845316, -0.8293116961175));\n B.add_vertex( Point( 0.4874571845315, 0.4874571845316, 0.6709272557930));\n end2 = B.add_vertex( Point(-0.0000000000000, -1.0000000000000, 0.0000000000000)); //End Vertex\n B.add_vertex( Point( 0.7887222926324, 0.4874571845315, -0.2562714077342));\n neight2 = B.add_vertex( Point( 0.4874571845316, -0.4874571845315, 0.6709272557930));\n B.add_vertex( Point( 0.7887222926324, -0.4874571845315, -0.2562714077342));\n \n // Start internal Structure\n /*\n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 0);\n B.add_vertex_to_facet( 2);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 0);\n B.add_vertex_to_facet( 2);\n B.add_vertex_to_facet( 5);\n B.add_vertex_to_facet( 6);\n B.end_facet();\n \n \n B.begin_facet();\n B.add_vertex_to_facet( 7);\n B.add_vertex_to_facet( 6);\n B.add_vertex_to_facet( 5);\n B.add_vertex_to_facet( 4);\n B.end_facet();\n\t\t\t\t\n B.begin_facet();\n B.add_vertex_to_facet( 7);\n B.add_vertex_to_facet( 9);\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 4);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 7);\n B.add_vertex_to_facet( 11);\n B.add_vertex_to_facet( 10);\n B.add_vertex_to_facet( 4);\n B.end_facet();\n \n */\n \n \n B.begin_facet();\n B.add_vertex_to_facet( 10);\n B.add_vertex_to_facet( 11);\n B.add_vertex_to_facet( 9);\n B.add_vertex_to_facet( 7);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 10);\n B.add_vertex_to_facet( 11);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 9);\n B.add_vertex_to_facet( 7);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 9);\n B.add_vertex_to_facet( 5);\n B.add_vertex_to_facet( 6);\n B.add_vertex_to_facet( 11);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 11);\n B.add_vertex_to_facet( 6);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 5);\n B.add_vertex_to_facet( 9);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 5);\n B.add_vertex_to_facet( 0);\n B.add_vertex_to_facet( 2);\n B.add_vertex_to_facet( 6);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 6);\n B.add_vertex_to_facet( 2);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 0);\n B.add_vertex_to_facet( 5);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 0);\n B.add_vertex_to_facet( 1);\n B.add_vertex_to_facet( 4);\n B.add_vertex_to_facet( 2);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 2);\n B.add_vertex_to_facet( 4);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 1);\n B.add_vertex_to_facet( 0);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 1);\n B.add_vertex_to_facet( 7);\n B.add_vertex_to_facet( 10);\n B.add_vertex_to_facet( 4);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 8);\n B.add_vertex_to_facet( 4);\n B.add_vertex_to_facet( 10);\n B.end_facet();\n \n B.begin_facet();\n B.add_vertex_to_facet( 3);\n B.add_vertex_to_facet( 7);\n B.add_vertex_to_facet( 1);\n B.end_facet();\n\t\t\t\t\n\t\t\t\t\n\t\t\t\t\n B.end_surface();\n }\n};\n\n\n\n\n\n\n\nstruct Normal_vector {\n template <class Facet>\n typename Facet::Plane_3 operator()( Facet& f) {\n typename Facet::Halfedge_handle h = f.halfedge();\n // Facet::Plane_3 is the normal vector type. We assume the\n // CGAL Kernel here and use its global functions.\n return CGAL::cross_product( \n\t\t\t h->next()->vertex()->point() - h->vertex()->point(),\n\t\t\t h->next()->next()->vertex()->point() - h->next()->vertex()->point());\n }\n};\n\n\nbool isInsidePolyhedron(Polyhedron& p,Point_3 point) {\n Plane_iterator i;\n Facet_iterator j;\n for ( i =p.planes_begin(), j = p.facets_begin(); i != p.planes_end() && j !=p.facets_end(); ++i, ++j) {\n Halfedge_facet_circulator k = j->facet_begin();\n \n Vector_3 newVector = point - k->vertex()->point();\n Vector_3 normal = *i;\t\t\n double dot_product = newVector.x() * normal.x() + newVector.y() * normal.y() + newVector.z() * normal.z();\n \n if (dot_product < 0) {\n return false;\t\n }\n }\n \n return true;\n}\n\n\nint main() {\n Polyhedron P;\n //Build_nanorod<HalfedgeDS> nanorod;\n BuildNanorodInterior <HalfedgeDS> nanorod;\n P.delegate( nanorod);\n //CGAL_assertion( P.is_triangle( P.halfedges_begin()));\n \n /*\tAff_transformation_3<kernel> A( const Scaling,\n Kernel::RT s=RT(20),\n Kernel::RT hw = RT(1));\n */\t\n \n // Compute affine transform to scale to the correct length\n /*\n CGAL::Scaling temp;\n //\tCGAL::Aff_transformation_3<Kernel> aff_tranformation(temp,20);\n /*\tCGAL::Aff_transformation_3<Kernel> aff_tranformation( 1.0,\n 0,\n 0,\n 0,\n 0,\n 20,\n 0,\n 0,\n 0,\n 0,\n 1,\n 0,\n 0,\n 0,\n 0,\n 1);*/\n /*\n double y1 = nanorod.end1->point().y() - nanorod.neight1->point().y();\n double y2 = nanorod.end2->point().y() - nanorod.neight2->point().y();\n \n CGAL::Aff_transformation_3<Kernel> aff_tranformation( 1.0,\n 0.0,\n 0.0,\n 0.0,\n 0.0,\n 4.0,\n 0.0,\n 0.0,\n 0.0,\n 0.0,\n 1.0,\n 0.0);\t\n std::transform( P.points_begin(), P.points_end(), P.points_begin(), aff_tranformation);\n \n Point_3 point1(nanorod.end1->point().x(), y1 + nanorod.neight1->point().y(), nanorod.end1->point().z());\n Point_3 point2(nanorod.end2->point().x(), y2+ nanorod.neight2->point().y(), nanorod.end2->point().z());\n nanorod.end1->point() = point1;\n nanorod.end2->point() = point2;\n \n \n std::transform( P.facets_begin(), P.facets_end(), P.planes_begin(),\n Normal_vector());\n Point_3 mypoint(0, 0, 0);\n */\n //std::cout << \"mypoint is inside polyhedron: \" << isInsidePolyhedron(P, mypoint) << std::endl;\n // Write polyhedron in Object File Format (OFF).\n CGAL::set_ascii_mode( std::cout);\n std::cout << \"OFF\" << std::endl << P.size_of_vertices() << ' ' \n\t << P.size_of_facets() << \" 0\" << std::endl;\n std::copy( P.points_begin(), P.points_end(),\n std::ostream_iterator<Point_3>( std::cout, \"\\n\"));\n for ( Facet_iterator i = P.facets_begin(); i != P.facets_end(); ++i) {\n Halfedge_facet_circulator j = i->facet_begin();\n // Facets in polyhedral surfaces are at least triangles.\n CGAL_assertion( CGAL::circulator_size(j) >= 3);\n std::cout << CGAL::circulator_size(j) << ' ';\n do {\n std::cout << ' ' << std::distance(P.vertices_begin(), j->vertex());\n } while ( ++j != i->facet_begin());\n std::cout << std::endl;\n }\n \n //\tCGAL::set_pretty_mode( std::cout);\n //\tstd::copy( P.planes_begin(), P.planes_end(),\n //\t\t\t\t\t\t std::ostream_iterator<Vector_3>( std::cout, \"\\n\"));\n\t\n return 0;\n\t\n}\n";
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630     name = "/*\n * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.\n *\n * The University of Notre Dame grants you (\"Licensee\") a\n * non-exclusive, royalty free, license to use, modify and\n * redistribute this software in source and binary code form, provided\n * that the following conditions are met:\n *\n * 1. Acknowledgement of the program authors must be made in any\n * publication of scientific results based in part on use of the\n * program. An acceptable form of acknowledgement is citation of\n * the article in which the program was described (Matthew\n * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher\n * J. Fennell and J. Daniel Gezelter, \"OOPSE: An Object-Oriented\n * Parallel Simulation Engine for Molecular Dynamics,\"\n * J. Comput. Chem. 26, pp. 252-271 (2005))\n *\n * 2. Redistributions of source code must retain the above copyright\n * notice, this list of conditions and the following disclaimer.\n *\n * 3. Redistributions in binary form must reproduce the above copyright\n * notice, this list of conditions and the following disclaimer in the\n * documentation and/or other materials provided with the\n * distribution.\n *\n * This software is provided \"AS IS,\" without a warranty of any\n * kind. All express or implied conditions, representations and\n * warranties, including any implied warranty of merchantability,\n * fitness for a particular purpose or non-infringement, are hereby\n * excluded. The University of Notre Dame and its licensors shall not\n * be liable for any damages suffered by licensee as a result of\n * using, modifying or distributing the software or its\n * derivatives. In no event will the University of Notre Dame or its\n * licensors be liable for any lost revenue, profit or data, or for\n * direct, indirect, special, consequential, incidental or punitive\n * damages, however caused and regardless of the theory of liability,\n * arising out of the use of or inability to use software, even if the\n * University of Notre Dame has been advised of the possibility of\n * such damages.\n */\n";
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640     name = "#ifndef APPLICATIONS_SIMPLEBUILDER_LATTICEFACTORY_HPP\n#define APPLICATIONS_SIMPLEBUILDER_LATTICEFACTORY_HPP\n#include <map>\n#include <string>\n\nnamespace oopse {\n\nclass BaseLatticeCreator;\nclass BaseLattice;\n\nclass LatticeFactory{\npublic:\n\t~LatticeFactory();\n\n\tstatic LatticeFactory* getInstance();\n\n\tbool registerCreator( BaseLatticeCreator* latCreator );\n\n\n bool hasLatticeCreator( const std::string& latticeType );\n\n const std::string toString();\n\n BaseLattice* createLattice( const std::string& latticeType );\n \nprivate:\n\tLatticeFactory(){}\n static LatticeFactory* instance;\n std::map<std::string, BaseLatticeCreator*> creatorMap;\n};\n\n}\n#endif \n";
641     rLen = 669;
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643     rType = 0;
644     vrLen = 675;
645     vrLoc = 2071;
646     };
647     56D5A2700801FB1F00E8B24E = {
648     fRef = 56C43D690801D45600D498C6;
649     isa = PBXTextBookmark;
650     name = "#ifndef APPLICATIONS_SIMPLEBUILDER_LATTICEFACTORY_HPP\n#define APPLICATIONS_SIMPLEBUILDER_LATTICEFACTORY_HPP\n#include <map>\n#include <string>\n\nnamespace oopse {\n\nclass BaseLatticeCreator;\nclass BaseLattice;\n\nclass LatticeFactory{\npublic:\n\t~LatticeFactory();\n\n\tstatic LatticeFactory* getInstance();\n\n\tbool registerCreator( BaseLatticeCreator* latCreator );\n\n\n bool hasLatticeCreator( const std::string& latticeType );\n\n const std::string toString();\n\n BaseLattice* createLattice( const std::string& latticeType );\n \nprivate:\n\tLatticeFactory(){}\n static LatticeFactory* instance;\n std::map<std::string, BaseLatticeCreator*> creatorMap;\n};\n\n}\n#endif \n";
651     rLen = 669;
652     rLoc = 2077;
653     rType = 0;
654     vrLen = 675;
655     vrLoc = 2071;
656     };
657     56D5A2730801FCE000E8B24E = {
658     fRef = 56C43D630801D45600D498C6;
659     isa = PBXTextBookmark;
660     name = "#ifndef APPLICATIONS_SIMPLEBUILDER_BASELATTICE_HPP\n#define APPLICATIONS_SIMPLEBUILDER_BASELATTICE_HPP\n\n#include <vector>\n#include \"math/Vector3.hpp\"\n\nnamespace oopse {\n\nclass BaseLattice{\n protected:\n BaseLattice(){\n \n setOrigin(V3Zero);\n }\n \n public:\n\n //virtual destructor of BaseLattice\n virtual ~BaseLattice() {}\n\n //get lattice type\n virtual const std::string getLatticeType() = 0;\n \n int getNumSitesPerCell() {return nCellSites;}\n\n void getLatticePointsPos(std::vector<Vector3d>& latticePos, int nx, int ny, int nz);\n\n std::vector<Vector3d> getLatticePointsOrt() {return cellSitesOrt;}\n \n //get lattice constant of unit cell\n virtual std::vector<double> getLatticeConstant() =0;\n\n //set lattice constant of unit cell\n virtual void setLatticeConstant(const std::vector<double>& lc)=0;\n\n //get origin of unit cell\n Vector3d getOrigin( ) {return origin;} \n\n //set origin of unit cell\n void setOrigin(const Vector3d& newOrigin){\n this->origin = newOrigin;\n }\n\n protected:\n virtual void update() =0;\n \n int nCellSites;\n Vector3d origin; \n std::vector<Vector3d> cellSitesPos;\n std::vector<Vector3d> cellSitesOrt;\n Vector3d cellLen;\n};\n\n\n}\n\n#endif\n";
661     rLen = 1258;
662     rLoc = 2077;
663     rType = 0;
664     vrLen = 837;
665     vrLoc = 2498;
666     };
667     56D5A2760801FCE000E8B24E = {
668     fRef = 56C43D630801D45600D498C6;
669     isa = PBXTextBookmark;
670     name = "#ifndef APPLICATIONS_SIMPLEBUILDER_BASELATTICE_HPP\n#define APPLICATIONS_SIMPLEBUILDER_BASELATTICE_HPP\n\n#include <vector>\n#include \"math/Vector3.hpp\"\n\nnamespace oopse {\n\nclass BaseLattice{\n protected:\n BaseLattice(){\n \n setOrigin(V3Zero);\n }\n \n public:\n\n //virtual destructor of BaseLattice\n virtual ~BaseLattice() {}\n\n //get lattice type\n virtual const std::string getLatticeType() = 0;\n \n int getNumSitesPerCell() {return nCellSites;}\n\n void getLatticePointsPos(std::vector<Vector3d>& latticePos, int nx, int ny, int nz);\n\n std::vector<Vector3d> getLatticePointsOrt() {return cellSitesOrt;}\n \n //get lattice constant of unit cell\n virtual std::vector<double> getLatticeConstant() =0;\n\n //set lattice constant of unit cell\n virtual void setLatticeConstant(const std::vector<double>& lc)=0;\n\n //get origin of unit cell\n Vector3d getOrigin( ) {return origin;} \n\n //set origin of unit cell\n void setOrigin(const Vector3d& newOrigin){\n this->origin = newOrigin;\n }\n\n protected:\n virtual void update() =0;\n \n int nCellSites;\n Vector3d origin; \n std::vector<Vector3d> cellSitesPos;\n std::vector<Vector3d> cellSitesOrt;\n Vector3d cellLen;\n};\n\n\n}\n\n#endif\n";
671     rLen = 1258;
672     rLoc = 2077;
673     rType = 0;
674     vrLen = 837;
675     vrLoc = 2498;
676     };
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686     };
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696     };
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