| 3 | 
  | 
#include <cstdlib> | 
| 4 | 
  | 
#include <cmath> | 
| 5 | 
  | 
#include <cstring> | 
| 6 | 
+ | 
#include <mpi.h> | 
| 7 | 
  | 
 | 
| 8 | 
+ | 
#include "simError.h" | 
| 9 | 
+ | 
#include "SimSetup.hpp" | 
| 10 | 
+ | 
#include "SimInfo.hpp" | 
| 11 | 
+ | 
#include "Atom.hpp" | 
| 12 | 
+ | 
#include "Integrator.hpp" | 
| 13 | 
+ | 
#include "Thermo.hpp" | 
| 14 | 
+ | 
#include "ReadWrite.hpp" | 
| 15 | 
  | 
 | 
| 8 | 
– | 
#include "../../inc/SimSetup.hpp" | 
| 9 | 
– | 
#include "../../inc/SimInfo.hpp" | 
| 10 | 
– | 
#include "../../inc/Atom.hpp" | 
| 11 | 
– | 
#include "../../inc/Integrator.hpp" | 
| 12 | 
– | 
#include "../../inc/Thermo.hpp" | 
| 13 | 
– | 
#include "../../inc/ReadWrite.hpp" | 
| 14 | 
– | 
 | 
| 16 | 
  | 
char* program_name; | 
| 17 | 
  | 
using namespace std; | 
| 18 | 
  | 
 | 
| 37 | 
  | 
  int n_LRI; | 
| 38 | 
  | 
  int n_exclude; | 
| 39 | 
  | 
   | 
| 40 | 
+ | 
  // first things first, all of the initializations | 
| 41 | 
  | 
 | 
| 42 | 
< | 
  srand48( 1337 ); // initialize the random number generator. | 
| 42 | 
> | 
  MPI_Init( &argc, &argv ); // the MPI communicators | 
| 43 | 
> | 
  initSimError();           // the error handler | 
| 44 | 
> | 
  srand48( 1337 );          // the random number generator. | 
| 45 | 
  | 
 | 
| 46 | 
  | 
   | 
| 47 | 
< | 
  program_name = argv[0]; /*save the program name in case we need it*/ | 
| 44 | 
< | 
  if( argc < 2 ){ | 
| 45 | 
< | 
    cerr<< "Error, bass file is needed to run.\n"; | 
| 46 | 
< | 
    exit(8); | 
| 47 | 
< | 
  } | 
| 47 | 
> | 
  // check command line arguments, and set the input file | 
| 48 | 
  | 
   | 
| 49 | 
+ | 
  program_name = argv[0]; // save the program name in case we need it | 
| 50 | 
  | 
   | 
| 51 | 
+ | 
  if( worldRank == 0 ){ | 
| 52 | 
+ | 
    if( argc < 2 ){ | 
| 53 | 
+ | 
      strcpy( painCave.errMsg, "Error, bass file is needed to run.\n" ); | 
| 54 | 
+ | 
      painCave.isFatal = 1; | 
| 55 | 
+ | 
      simError(); | 
| 56 | 
+ | 
    } | 
| 57 | 
+ | 
  } | 
| 58 | 
+ | 
 | 
| 59 | 
  | 
  in_name = argv[1]; | 
| 60 | 
< | 
  entry_plug = new SimInfo; | 
| 60 | 
> | 
 | 
| 61 | 
> | 
  strcpy( checkPointMsg, "Successful number of arguments" ); | 
| 62 | 
> | 
  MPIcheckPoint(); | 
| 63 | 
  | 
   | 
| 64 | 
+ | 
   | 
| 65 | 
+ | 
  // create the simulation objects, and get the show on the road | 
| 66 | 
+ | 
     | 
| 67 | 
+ | 
  entry_plug = new SimInfo; | 
| 68 | 
  | 
  startMe = new SimSetup; | 
| 69 | 
+ | 
   | 
| 70 | 
  | 
  startMe->setSimInfo( entry_plug ); | 
| 71 | 
  | 
  startMe->parseFile( in_name ); | 
| 72 | 
  | 
  startMe->createSim(); | 
| 73 | 
  | 
 | 
| 74 | 
< | 
  delete startMe; | 
| 74 | 
> | 
  // end it here for now | 
| 75 | 
  | 
 | 
| 76 | 
< | 
  entry_plug->the_integrator->integrate(); | 
| 76 | 
> | 
  strcpy( checkPointMsg, "Oh what a lovely Tea Party!" ); | 
| 77 | 
> | 
  MPIcheckPoint(); | 
| 78 | 
  | 
 | 
| 79 | 
+ | 
  MPI_Finalize();         | 
| 80 | 
  | 
  return 0 ; | 
| 81 | 
+ | 
 | 
| 82 | 
+ | 
//   delete startMe; | 
| 83 | 
+ | 
 | 
| 84 | 
+ | 
//   entry_plug->the_integrator->integrate(); | 
| 85 | 
+ | 
 | 
| 86 | 
+ | 
//   strcpy( checkPointMsg, "Oh what a lovely Tea Party!" ); | 
| 87 | 
+ | 
//   MPIcheckPoint(); | 
| 88 | 
+ | 
 | 
| 89 | 
+ | 
//   MPI_Finalize();      | 
| 90 | 
+ | 
//   return 0 ; | 
| 91 | 
  | 
} | 
| 92 | 
  | 
 | 
| 93 | 
  | 
 |