--- trunk/mdtools/interface_implementation/SimSetup.cpp	2003/01/30 15:20:21	253
+++ trunk/mdtools/interface_implementation/SimSetup.cpp	2003/02/03 21:15:59	261
@@ -238,7 +238,11 @@ void SimSetup::createSim( void ){
   
   mpiSim = new mpiSimulation( simnfo );
   
+  
+
   globalIndex = mpiSim->divideLabor();
+
+
 
   // set up the local variables 
   
@@ -392,7 +396,7 @@ void SimSetup::createSim( void ){
   the_ff->setSimInfo( simnfo );
 
   makeAtoms();
-
+  //
   if( tot_bonds ){
     makeBonds();
   }
@@ -649,7 +653,9 @@ void SimSetup::makeAtoms( void ){
     for( i=0; i<mpiSim->getMyNlocal(); i++ ) the_atoms[i]->setGlobalIndex( globalIndex[i] );
     
     delete[] globalIndex;
-#endif IS_MPI
+
+    mpiSim->mpiRefresh();
+#endif //IS_MPI
 	  
   the_ff->initializeAtoms();
 }
@@ -690,7 +696,7 @@ void SimSetup::makeBonds( void ){
 	
 #ifdef IS_MPI
       }
-#endif is_mpi
+#endif //is_mpi
       
       molIndex++;
     }