| 128 | 
  | 
  // create the atom and short range interaction arrays | 
| 129 | 
  | 
   | 
| 130 | 
  | 
  the_atoms = new Atom*[tot_atoms]; | 
| 131 | 
< | 
  //  the_molecules = new Molecule[tot_nmol]; | 
| 131 | 
> | 
  the_molecules = new Molecule[tot_nmol]; | 
| 132 | 
  | 
   | 
| 133 | 
  | 
   | 
| 134 | 
  | 
  if( tot_SRI ){ | 
| 142 | 
  | 
  simnfo->sr_interactions = the_sris; | 
| 143 | 
  | 
  simnfo->n_exclude = tot_SRI; | 
| 144 | 
  | 
  simnfo->excludes = the_excludes; | 
| 145 | 
+ | 
   | 
| 146 | 
  | 
 | 
| 147 | 
  | 
  // initialize the arrays | 
| 148 | 
  | 
   | 
| 489 | 
  | 
 | 
| 490 | 
  | 
void SimSetup::makeMolecules( void ){ | 
| 491 | 
  | 
 | 
| 492 | 
< | 
  //empy for now | 
| 492 | 
> | 
  int i,j,k; | 
| 493 | 
> | 
   | 
| 494 | 
> | 
  for( i=0; i<n_components; i++ ){ | 
| 495 | 
> | 
     | 
| 496 | 
> | 
    for( j=0; j<components_nmol[i]; j++ ){ | 
| 497 | 
> | 
       | 
| 498 | 
> | 
       | 
| 499 | 
> | 
 | 
| 500 | 
  | 
} | 
| 501 | 
  | 
 | 
| 502 | 
  | 
void SimSetup::initFromBass( void ){ |