| 13 | 
  | 
  if( next != NULL ) delete next;  | 
| 14 | 
  | 
} | 
| 15 | 
  | 
 | 
| 16 | 
+ | 
void LinkedMolStamp::add( LinkedMolStamp* newbie ){ | 
| 17 | 
+ | 
   | 
| 18 | 
+ | 
  if( next != NULL ) next->add( newbie ); | 
| 19 | 
+ | 
  else{ | 
| 20 | 
+ | 
    next = newbie; | 
| 21 | 
+ | 
    next->setPrev( this ); | 
| 22 | 
+ | 
  } | 
| 23 | 
+ | 
} | 
| 24 | 
+ | 
 | 
| 25 | 
  | 
MoleculeStamp* LinkedMolStamp::match( char* id ){ | 
| 26 | 
  | 
 | 
| 27 | 
  | 
  if( mol_stamp != NULL ){ | 
| 28 | 
< | 
     | 
| 29 | 
< | 
    if(!strcmp( mol_stamp->getID(), id )) return mol_stamp; | 
| 30 | 
< | 
     | 
| 31 | 
< | 
    if( next != NULL ) return next->match( id ); | 
| 28 | 
> | 
    if(!strcmp( mol_stamp->getID(), id )){ | 
| 29 | 
> | 
       | 
| 30 | 
> | 
      // make sure we aren't hiding somebody else with the same name | 
| 31 | 
> | 
      if(next != NULL ){ | 
| 32 | 
> | 
        if( next->match( id ) != NULL){ | 
| 33 | 
> | 
          sprintf( painCave.errMsg, | 
| 34 | 
> | 
                   "Molecule Stamp Error. Two separate of declarations of " | 
| 35 | 
> | 
                   "%s present.\n", | 
| 36 | 
> | 
                   id ); | 
| 37 | 
> | 
          painCave.isFatal = 1; | 
| 38 | 
> | 
          simError(); | 
| 39 | 
> | 
#ifdef IS_MPI | 
| 40 | 
> | 
          if( painCave.isEventLoop ){ | 
| 41 | 
> | 
            if( worldRank == 0 ) mpiInterfaceExit(); | 
| 42 | 
> | 
          } | 
| 43 | 
> | 
#endif //is_mpi | 
| 44 | 
> | 
        } | 
| 45 | 
> | 
        else return mol_stamp; | 
| 46 | 
> | 
      } | 
| 47 | 
> | 
      else  return mol_stamp; | 
| 48 | 
> | 
    } | 
| 49 | 
  | 
  } | 
| 50 | 
  | 
   | 
| 51 | 
+ | 
  if( next != NULL ) return next->match( id ); | 
| 52 | 
+ | 
   | 
| 53 | 
  | 
  return NULL; | 
| 54 | 
  | 
} | 
| 55 | 
  | 
 | 
| 56 | 
+ | 
LinkedMolStamp* LinkedMolStamp::extract( char* id ){ | 
| 57 | 
+ | 
 | 
| 58 | 
+ | 
  if( mol_stamp != NULL ){ | 
| 59 | 
+ | 
    if(!strcmp( mol_stamp->getID(), id )){ | 
| 60 | 
+ | 
       | 
| 61 | 
+ | 
      // make sure we aren't hiding somebody else with the same name | 
| 62 | 
+ | 
      if(next != NULL ){ | 
| 63 | 
+ | 
        if( next->match( id ) != NULL){ | 
| 64 | 
+ | 
          sprintf( painCave.errMsg, | 
| 65 | 
+ | 
                   "Molecule Stamp Error. Two separate of declarations of " | 
| 66 | 
+ | 
                   "%s present.\n", | 
| 67 | 
+ | 
                   id ); | 
| 68 | 
+ | 
          painCave.isFatal = 1; | 
| 69 | 
+ | 
          simError(); | 
| 70 | 
+ | 
#ifdef IS_MPI | 
| 71 | 
+ | 
          if( painCave.isEventLoop ){ | 
| 72 | 
+ | 
            if( worldRank == 0 ) mpiInterfaceExit(); | 
| 73 | 
+ | 
          } | 
| 74 | 
+ | 
#endif //is_mpi | 
| 75 | 
+ | 
        } | 
| 76 | 
+ | 
      } | 
| 77 | 
+ | 
           | 
| 78 | 
+ | 
      prev->setNext( next ); | 
| 79 | 
+ | 
      if( next != NULL ) next->setPrev( prev ); | 
| 80 | 
+ | 
      return this; | 
| 81 | 
+ | 
    } | 
| 82 | 
+ | 
  } | 
| 83 | 
+ | 
   | 
| 84 | 
+ | 
  if( next != NULL ) return next->extract( id ); | 
| 85 | 
+ | 
   | 
| 86 | 
+ | 
  return NULL; | 
| 87 | 
+ | 
} | 
| 88 | 
+ | 
 | 
| 89 | 
  | 
MakeStamps::MakeStamps(){ | 
| 90 | 
  | 
   | 
| 91 | 
  | 
  int i; | 
| 92 | 
  | 
   | 
| 93 | 
  | 
  my_mols = new LinkedMolStamp*[hash_size]; | 
| 94 | 
  | 
  for( i=0; i<hash_size; i++ ){ | 
| 95 | 
< | 
    my_mols[i] = NULL; | 
| 95 | 
> | 
    my_mols[i] = new LinkedMolStamp(); | 
| 96 | 
  | 
  } | 
| 97 | 
  | 
 | 
| 98 | 
  | 
} | 
| 137 | 
  | 
  return key; | 
| 138 | 
  | 
} | 
| 139 | 
  | 
 | 
| 140 | 
< | 
MoleculeStamp* MakeStamps::getMolecule( char* the_id ){ | 
| 140 | 
> | 
LinkedMolStamp* MakeStamps::extractMolStamp( char* the_id ){ | 
| 141 | 
  | 
  int key; | 
| 142 | 
  | 
   | 
| 143 | 
  | 
  key = hash( the_id ); | 
| 144 | 
  | 
  if( my_mols[key] != NULL ){ | 
| 145 | 
< | 
    return my_mols[key]->match( the_id ); | 
| 145 | 
> | 
    return my_mols[key]->extract( the_id ); | 
| 146 | 
  | 
  } | 
| 147 | 
  | 
   | 
| 148 | 
  | 
  return NULL; | 
| 157 | 
  | 
 | 
| 158 | 
  | 
  linked_mol = new LinkedMolStamp; | 
| 159 | 
  | 
  linked_mol->setStamp( the_stamp ); | 
| 99 | 
– | 
  linked_mol->setNext( my_mols[key] ); | 
| 160 | 
  | 
 | 
| 161 | 
< | 
  my_mols[key] = linked_mol; | 
| 161 | 
> | 
  my_mols[key]->add( linked_mol ); | 
| 162 | 
> | 
 | 
| 163 | 
  | 
} | 
| 164 | 
  | 
 | 
| 165 | 
  | 
 |