[ViewVC] Diff of: group/trunk/mattDisertation/disertation.bib

Comparing trunk/mattDisertation/disertation.bib (file contents):
Revision 1054 by mmeineke, Mon Feb 16 20:35:58 2004 UTC vs.
Revision 1114 by mmeineke, Thu Apr 15 16:42:53 2004 UTC

+@Article{venable00,
+  author =       {R.~M. Venable and B.~R. Brooks and R.~W. Pastor},
-<
+  title =        {MOlecular dynamics simulations of gel ($L_{\betaI}$) phase lipid bilayers in constant pressure and constant surface area ensembles},
->
+  title =        {Molecular dynamics simulations of gel ($L_{\beta I}$) phase lipid bilayers in constant pressure and constant surface area ensembles},
+  journal =      jcp,
+  year =         2000,
+  volume =       112,
+@Article{lindahl00,
+  author =       {E. Lindahl and O. Edholm},
-<
+  title =        {Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamicxs simulations},
->
+  title =        {Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations},
+  journal =      {Biophysical Journal},
+  year =         2000,
+  volume =       79,
+  pages =        77
-+
+@Article{marrink:2002,
-+
+  author =       {S.~J. Marrink and D.~P. Teileman},
-+
+  title =        {Molecular Dynamics Simulation of Spontaneous Membrane Fusion during a Cubic-Hexagonal Phase Transition},
-+
+  journal =      {Biophysical Journal},
-+
+  year =         2002,
-+
+  volume =       83,
-+
+  pages =        {2386-2392}
-+
+}
-+
-+
+@Article{sum:2003,
-+
+  author =       {A.~K. Sum and J.~J. de~Pablo},
-+
+  title =        {Molecular Simulation Study on the influence of Dimethylsulfoxide on the structure of Phospholipid Bilayers},
-+
+  journal =      {Biophysical Journal},
-+
+  year =         2003,
-+
+  volume =       85,
-+
+  pages =        {3636-3645}
-+
+}
-+
-+
+@Article{gomez:2003,
-+
+  author =       {J.~D. Faraldo-Gomez and G.~R. Smith and M.~S.P. Sansom},
-+
+  title =        {Setting up and optimization of membrane protein simulations},
-+
+  journal =      {Eur. Biophys. J.},
-+
+  year =         2002,
-+
+  volume =       31,
-+
+  pages =        {217-227}
-+
+}
-+
-+
-+
+@Article{smondyrev:1999,
-+
+  author =       {A.~M. Smondyrev and M.~L. Berkowitz},
-+
+  title =        {Molecular Dynamics Simulation of DPPC Bilayer in DMSO},
-+
+  journal =      {Biophysical Journal},
-+
+  year =         1999,
-+
+  volume =       76,
-+
+  pages =        {2472-2478}
-+
+}
-+
-+
+@Article{nina:2002,
-+
+  author =       {M. Nina and T. Simonson},
-+
+  title =        {Molecular Dynamics of the $\text{tRNA}^{\text{Ala}}$ Acceptor Stem: Comparison between Continuum Reaction Field and Particle-Mesh Ewald Electrostatic Treatments},
-+
+  journal =      {J. Phys. Chem. B},
-+
+  year =         2002,
-+
+  volume =       106,
-+
+  pages =        {3696-3705}
-+
+}
-+
-+
+@Article{norberg:2000,
-+
+  author =       {J. Norberg and L. Nilsson},
-+
+  title =        {On the truncation od Long-Range Electrostatic Interactions in DNA},
-+
+  journal =      {Biophysical Journal},
-+
+  year =         2000,
-+
+  volume =       79,
-+
+  pages =        {1537-1553}
-+
+}
-+
-+
+@Article{patra:2003,
-+
+  author =       {M. Patra and M. Karttunen and M.~T. Hyv\"{o}nen and E. Falk and P. Lindqvist and I. Vattulainen},
-+
+  title =        {Molecular Dynamics Simulations of Lipid Bilayers: Major Artifacts Due to Truncating Electrostatic Interactions},
-+
+  journal =      {Biophysical Journal},
-+
+  year =         2003,
-+
+  volume =       84,
-+
+  pages =        {3636-3645}
-+
+}
-+
-+
+@Article{marrink04,
-+
+  author =       {S.~J. Marrink and A.~H. de~Vries and A.~E. Mark},
-+
+  title =        {Coarse Grained Model for Semiquantitative Lipid Simulations},
-+
+  journal =      {J. Phys. Chem. B},
-+
+  year =         2004,
-+
+  volume =       108,
-+
+  pages =        {750-760}
-+
+}
-+
-+
+@Article{andersen83,
-+
+  author =       {H.~C. Andersen},
-+
+  title =        {Rattle: A Velocity Version of the Shake Algorithm for Molecular Dynamics Calculations},
-+
+  journal =      {Journal of Computational Physics},
-+
+  year =         1983,
-+
+  volume =       52,
-+
+  pages =        {24-34}
-+
+}
-+
-+
+@Article{hura00,
-+
+  author =       {G. Hura and J.~M. Sorenson and R.~M. Glaeser and T. Head-Gordon},
-+
+  title =        {A high-quality x-ray scattering experiment on liquid water at ambient conditions},
-+
+  journal =      {J. Chem. Phys.},
-+
+  year =         2000,
-+
+  volume =       113,
-+
+  pages =        {9140-9148}
-+
+}
-+
-+
-+
+@Article{ryckaert77,
-+
+  author =       {J.~P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen},
-+
+  title =        {Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes},
-+
+  journal =      {Journal of Computational Physics},
-+
+  year =         1977,
-+
+  volume =       23,
-+
+  pages =        {327-341}
-+
+}
-+
-+
-+
+@InBook{fowles99:lagrange,
-+
+  author =       {G.~R. Fowles and G.~L. Cassiday},
-+
+  title =        {Analytical Mechanics},
-+
+  chapter =      10,
-+
+  publisher =    {Saunders College Publishing},
-+
+  year =         1999,
-+
+  edition =      {6th}
-+
+}
-+
-+
+@Article{petrache00,
-+
+  author =       {H.~I. Petrache and S.~W. Dodd and M.~F. Brown},
-+
+  title =        {Area per Lipid and Acyl Length Distributions in Fluid Phosphatidylcholines Determined by $^2\text{H}$ NMR Spectroscopy},
-+
+  journal =      {Biophysical Journal},
-+
+  year =         2000,
-+
+  volume =       79,
-+
+  pages =        {3172-3192}
-+
+}
-+
-+
+@Article{egberts88,
-+
+  author =       {E. Egberts and H.~J.~C. Berendsen},
-+
+  title =        {Molecular Dynamics Simulation of a smectic liquid crystal with atomic detail},
-+
+  journal =      {J. Chem. Phys.},
-+
+  year =         1988,
-+
+  volume =       89,
-+
+  pages =        {3718-3732}
-+
+}
-+
-+
+@Article{Holz00,
-+
+  author =       {M. Holz and S.~R. Heil and A. Sacco},
-+
+  title =        {Temperature-dependent self-diffusion coefficients of
-+
+                  water and six selected molecular liquids for calibration
-+
+                  in accurate $^1$H NMR PFG measurements},
-+
+  journal =      pccp,
-+
+  year =         2000,
-+
+  volume =       2,
-+
+  pages =        {4740-4742},
-+
+}
-+
-+
+@InCollection{zannoni94,
-+
+  author =       {C. Zannoni},
-+
+  title =        {An introduction to the molecular dynamics method and to orientational dynamics in liquid crystals},
-+
+  booktitle =    {The Molecular Dynamics of Liquid Crstals},
-+
+  pages =        {139-169},
-+
+  publisher =    {Kluwer Academic Publishers},
-+
+  year =         1994,
-+
+  editor =       {G.~R. Luckhurst and C.~A. Veracini},
-+
+  chapter =      6
-+
+}
-+
-+
-+
+@Article{melchionna93,
-+
+  author =       {S. Melchionna and G. Ciccotti and B.~L. Holian},
-+
+  title =        {Hoover NPT dynamics for systems varying in shape and size},
-+
+  journal =      {Molecular Physics},
-+
+  year =         1993,
-+
+  volume =       78,
-+
+  pages =        {533-544}
-+
+}
-+
-+
+@Article{fennell04,
-+
+  author =       {C.~J. Fennell and J.~D. Gezelter},
-+
+  title =        {On the structural and transport properties of the soft sticky dipole(SSD) and related single point water models},
-+
+  journal =      {J. Chem. Phys},
-+
+  year =         {in press 2004}
-+
+}
-+
-+
+@Article{klein01,
-+
+  author =       {J.~C. Shelley andf M.~Y. Shelley and R.~C. Reeder and S. Bandyopadhyay and M.~L. Klein},
-+
+  title =        {A coarse Grain Model for Phospholipid Simulations},
-+
+  journal =      {J. Phys. Chem. B},
-+
+  year =         2001,
-+
+  volume =       105,
-+
+  pages =        {4464-4470}
-+
+}
-+
-+
-+
+@Article{marrink03:vesicles,
-+
+  author =       {S.~J. Marrink and A.~E. Mark},
-+
+  title =        {Molecular Dynaimcs Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles},
-+
+  journal =      {J. Am. Chem. Soc.},
-+
+  year =         2003,
-+
+  volume =       125,
-+
+  pages =        {15233-15242}
-+
+}
-+

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Comparing trunk/mattDisertation/disertation.bib (file contents): Revision 1054 by mmeineke, Mon Feb 16 20:35:58 2004 UTC vs. Revision 1114 by mmeineke, Thu Apr 15 16:42:53 2004 UTC

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Comparing trunk/mattDisertation/disertation.bib (file contents):
Revision 1054 by mmeineke, Mon Feb 16 20:35:58 2004 UTC vs.
Revision 1114 by mmeineke, Thu Apr 15 16:42:53 2004 UTC