added the capability to specify a start and end frame for cosCorr and GofR
added the cos correlation function
got the GofR code working, and slimmed down the memory usage.
finished working on the command line options, and started working on the GofR
This commit was generated by cvs2svn to compensate for changes in r38, which included commits to RCS files with non-trunk default branches.
A half polished version of props
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