| 1 |
chrisfen |
2977 |
\chapter{\label{chap:ice}PHASE BEHAVIOR OF WATER IN COMPUTER SIMULATIONS} |
| 2 |
|
|
|
| 3 |
chrisfen |
2979 |
As discussed in the previous chapter, water has proven to be a |
| 4 |
|
|
challenging substance to depict in simulations, and a variety of |
| 5 |
|
|
models have been developed to describe its behavior under varying |
| 6 |
|
|
simulation |
| 7 |
chrisfen |
2978 |
conditions.\cite{Stillinger74,Rahman75,Berendsen81,Jorgensen83,Bratko85,Berendsen87,Caldwell95,Liu96,vanderSpoel98,Urbic00,Mahoney00,Fennell04} |
| 8 |
chrisfen |
2977 |
These models have been used to investigate important physical |
| 9 |
|
|
phenomena like phase transitions and the hydrophobic |
| 10 |
chrisfen |
2978 |
effect.\cite{Yamada02,Marrink94,Gallagher03} With the choice of models |
| 11 |
chrisfen |
2986 |
available, it is only natural to compare them under interesting |
| 12 |
chrisfen |
2978 |
thermodynamic conditions in an attempt to clarify the limitations of |
| 13 |
chrisfen |
2986 |
each.\cite{Jorgensen83,Jorgensen98b,Baez94,Mahoney01} Two important |
| 14 |
|
|
property to quantify are the Gibbs and Helmholtz free energies, |
| 15 |
|
|
particularly for the solid forms of water, as these predict the |
| 16 |
|
|
thermodynamic stability of the various phases. Water has a |
| 17 |
chrisfen |
2978 |
particularly rich phase diagram and takes on a number of different and |
| 18 |
|
|
stable crystalline structures as the temperature and pressure are |
| 19 |
|
|
varied. This complexity makes it a challenging task to investigate the |
| 20 |
|
|
entire free energy landscape.\cite{Sanz04} Ideally, research is |
| 21 |
chrisfen |
2977 |
focused on the phases having the lowest free energy at a given state |
| 22 |
chrisfen |
2978 |
point, because these phases will dictate the relevant transition |
| 23 |
|
|
temperatures and pressures for the model. |
| 24 |
chrisfen |
2977 |
|
| 25 |
chrisfen |
2978 |
The high-pressure phases of water (ice II-ice X as well as ice XII) |
| 26 |
|
|
have been studied extensively both experimentally and |
| 27 |
chrisfen |
2979 |
computationally. In this chapter, standard reference state methods |
| 28 |
chrisfen |
2978 |
were applied in the {\it low} pressure regime to evaluate the free |
| 29 |
|
|
energies for a few known crystalline water polymorphs that might be |
| 30 |
|
|
stable at these pressures. This work is unique in the fact that one of |
| 31 |
|
|
the crystal lattices was arrived at through crystallization of a |
| 32 |
|
|
computationally efficient water model under constant pressure and |
| 33 |
chrisfen |
2979 |
temperature conditions. |
| 34 |
|
|
|
| 35 |
|
|
While performing a series of melting simulations on an early iteration |
| 36 |
|
|
of SSD/E, we observed several recrystallization events at a constant |
| 37 |
chrisfen |
2981 |
pressure of 1 atm. After melting from ice I$_\textrm{h}$ at 235~K, two |
| 38 |
|
|
of five systems recrystallized near 245~K. Crystallization events are |
| 39 |
chrisfen |
2979 |
interesting in and of themselves;\cite{Matsumoto02,Yamada02} however, |
| 40 |
|
|
the crystal structure extracted from these systems is different from |
| 41 |
|
|
any previously observed ice polymorphs in experiment or |
| 42 |
|
|
simulation.\cite{Fennell04} We have named this structure Ice-{\it i} |
| 43 |
|
|
to indicate its origin in computational simulation. The unit cell of |
| 44 |
|
|
Ice-$i$ and an axially elongated variant named Ice-$i^\prime$ both |
| 45 |
|
|
consist of eight water molecules that stack in rows of interlocking |
| 46 |
|
|
water tetramers as illustrated in figure \ref{fig:iceiCell}A,B. These |
| 47 |
|
|
tetramers form a crystal structure similar in appearance to a recent |
| 48 |
|
|
two-dimensional surface tessellation simulated on silica.\cite{Yang04} |
| 49 |
|
|
As expected in an ice crystal constructed of water tetramers, the |
| 50 |
|
|
hydrogen bonds are not as linear as those observed in ice |
| 51 |
|
|
I$_\textrm{h}$; however, the interlocking of these subunits appears to |
| 52 |
|
|
provide significant stabilization to the overall crystal. The |
| 53 |
|
|
arrangement of these tetramers results in open octagonal cavities that |
| 54 |
chrisfen |
2981 |
are typically greater than 6.3~\AA\ in diameter (see figure |
| 55 |
chrisfen |
2978 |
\ref{fig:protOrder}). This open structure leads to crystals that are |
| 56 |
chrisfen |
2981 |
typically 0.07~g/cm$^3$ less dense than ice I$_\textrm{h}$. |
| 57 |
chrisfen |
2977 |
|
| 58 |
|
|
\begin{figure} |
| 59 |
|
|
\includegraphics[width=\linewidth]{./figures/unitCell.pdf} |
| 60 |
|
|
\caption{Unit cells for (A) Ice-{\it i} and (B) Ice-$i^\prime$, the |
| 61 |
|
|
elongated variant of Ice-{\it i}. For Ice-{\it i}, the $a$ to $c$ |
| 62 |
|
|
relation is given by $a = 2.1214c$, while for Ice-$i^\prime$, $a = |
| 63 |
|
|
1.7850c$.} |
| 64 |
chrisfen |
2978 |
\label{fig:iceiCell} |
| 65 |
chrisfen |
2977 |
\end{figure} |
| 66 |
|
|
|
| 67 |
|
|
\begin{figure} |
| 68 |
|
|
\centering |
| 69 |
|
|
\includegraphics[width=3.5in]{./figures/orderedIcei.pdf} |
| 70 |
|
|
\caption{Image of a proton ordered crystal of Ice-{\it i} looking |
| 71 |
|
|
down the (001) crystal face. The rows of water tetramers surrounded by |
| 72 |
|
|
octagonal pores leads to a crystal structure that is significantly |
| 73 |
chrisfen |
2978 |
less dense than ice I$_\textrm{h}$.} |
| 74 |
|
|
\label{fig:protOrder} |
| 75 |
chrisfen |
2977 |
\end{figure} |
| 76 |
|
|
|
| 77 |
chrisfen |
2979 |
Results from our initial studies indicated that Ice-{\it i} is the |
| 78 |
chrisfen |
2978 |
minimum energy crystal structure for the single point water models |
| 79 |
chrisfen |
2977 |
investigated (for discussions on these single point dipole models, see |
| 80 |
|
|
the previous work and related |
| 81 |
chrisfen |
2979 |
articles\cite{Fennell04,Liu96,Bratko85}). These earlier results only |
| 82 |
chrisfen |
2977 |
considered energetic stabilization and neglected entropic |
| 83 |
chrisfen |
2978 |
contributions to the overall free energy. To address this issue, we |
| 84 |
|
|
have calculated the absolute free energy of this crystal using |
| 85 |
|
|
thermodynamic integration and compared to the free energies of ice |
| 86 |
|
|
I$_\textrm{c}$ and ice I$_\textrm{h}$ (the common low-density ice |
| 87 |
|
|
polymorphs) and ice B (a higher density, but very stable crystal |
| 88 |
chrisfen |
2981 |
structure observed by B\'{a}ez and Clancy in free energy studies of |
| 89 |
chrisfen |
2977 |
SPC/E).\cite{Baez95b} This work includes results for the water model |
| 90 |
|
|
from which Ice-{\it i} was crystallized (SSD/E) in addition to several |
| 91 |
|
|
common water models (TIP3P, TIP4P, TIP5P, and SPC/E) and a reaction |
| 92 |
chrisfen |
2978 |
field parametrized single point dipole water model (SSD/RF). The |
| 93 |
|
|
axially elongated variant, Ice-$i^\prime$, was used in calculations |
| 94 |
|
|
involving SPC/E, TIP4P, and TIP5P. The square tetramer in Ice-$i$ |
| 95 |
|
|
distorts in Ice-$i^\prime$ to form a rhombus with alternating 85 and |
| 96 |
|
|
95 degree angles. Under SPC/E, TIP4P, and TIP5P, this geometry is |
| 97 |
|
|
better at forming favorable hydrogen bonds. The degree of rhomboid |
| 98 |
|
|
distortion depends on the water model used but is significant enough |
| 99 |
|
|
to split the peak in the radial distribution function which corresponds |
| 100 |
|
|
to diagonal sites in the tetramers. |
| 101 |
chrisfen |
2977 |
|
| 102 |
chrisfen |
2979 |
\section{Methods and Thermodynamic Integration} |
| 103 |
chrisfen |
2977 |
|
| 104 |
chrisfen |
2978 |
Canonical ensemble ({\it NVT}) molecular dynamics calculations were |
| 105 |
chrisfen |
2977 |
performed using the OOPSE molecular mechanics package.\cite{Meineke05} |
| 106 |
chrisfen |
2978 |
The densities chosen for the simulations were taken from |
| 107 |
|
|
isobaric-isothermal ({\it NPT}) simulations performed at 1 atm and |
| 108 |
chrisfen |
2981 |
200~K. Each model (and each crystal structure) was allowed to relax for |
| 109 |
|
|
300~ps in the {\it NPT} ensemble before averaging the density to obtain |
| 110 |
chrisfen |
2978 |
the volumes for the {\it NVT} simulations.All molecules were treated |
| 111 |
|
|
as rigid bodies, with orientational motion propagated using the |
| 112 |
|
|
symplectic DLM integration method described in section |
| 113 |
chrisfen |
2979 |
\ref{sec:IntroIntegrate}. |
| 114 |
chrisfen |
2977 |
|
| 115 |
chrisfen |
2979 |
|
| 116 |
chrisfen |
2978 |
We used thermodynamic integration to calculate the Helmholtz free |
| 117 |
|
|
energies ({\it A}) of the listed water models at various state |
| 118 |
|
|
points. Thermodynamic integration is an established technique that has |
| 119 |
|
|
been used extensively in the calculation of free energies for |
| 120 |
|
|
condensed phases of |
| 121 |
chrisfen |
2979 |
materials.\cite{Frenkel84,Hermens88,Meijer90,Baez95a,Vlot99}. This |
| 122 |
|
|
method uses a sequence of simulations over which the system of |
| 123 |
chrisfen |
2978 |
interest is converted into a reference system for which the free |
| 124 |
chrisfen |
2979 |
energy is known analytically ($A_0$). The difference in potential |
| 125 |
|
|
energy between the reference system and the system of interest |
| 126 |
|
|
($\Delta V$) is then integrated in order to determine the free energy |
| 127 |
|
|
difference between the two states: |
| 128 |
chrisfen |
2977 |
\begin{equation} |
| 129 |
chrisfen |
2979 |
A = A_0 + \int_0^1 \left\langle \Delta V \right\rangle_\lambda d\lambda. |
| 130 |
chrisfen |
2977 |
\end{equation} |
| 131 |
chrisfen |
2979 |
Here, $\lambda$ is the parameter that governs the transformation |
| 132 |
|
|
between the reference system and the system of interest. For |
| 133 |
|
|
crystalline phases, an harmonically-restrained (Einstein) crystal is |
| 134 |
|
|
chosen as the reference state, while for liquid phases, the ideal gas |
| 135 |
|
|
is taken as the reference state. Figure \ref{fig:integrationPath} |
| 136 |
|
|
shows an example integration path for converting a crystalline system |
| 137 |
|
|
to the Einstein crystal reference state. |
| 138 |
|
|
\begin{figure} |
| 139 |
|
|
\includegraphics[width=\linewidth]{./figures/integrationPath.pdf} |
| 140 |
|
|
\caption{An example integration path to convert an unrestrained |
| 141 |
|
|
crystal ($\lambda = 1$) to the Einstein crystal reference state |
| 142 |
|
|
($\lambda = 0$). Note the increase in samples at either end of the |
| 143 |
|
|
path to improve the smoothness of the curve. For reversible processes, |
| 144 |
|
|
conversion of the Einstein crystal back to the system of interest will |
| 145 |
|
|
give an identical plot, thereby integrating to the same result.} |
| 146 |
|
|
\label{fig:integrationPath} |
| 147 |
|
|
\end{figure} |
| 148 |
chrisfen |
2977 |
|
| 149 |
chrisfen |
2979 |
In an Einstein crystal, the molecules are restrained at their ideal |
| 150 |
|
|
lattice locations and orientations. Using harmonic restraints, as |
| 151 |
|
|
applied by B\'{a}ez and Clancy, the total potential for this reference |
| 152 |
|
|
crystal ($V_\mathrm{EC}$) is the sum of all the harmonic restraints, |
| 153 |
|
|
\begin{equation} |
| 154 |
|
|
V_\mathrm{EC} = \frac{K_\mathrm{v}r^2}{2} + \frac{K_\theta\theta^2}{2} + |
| 155 |
|
|
\frac{K_\omega\omega^2}{2}, |
| 156 |
|
|
\end{equation} |
| 157 |
|
|
where $K_\mathrm{v}$, $K_\mathrm{\theta}$, and $K_\mathrm{\omega}$ are |
| 158 |
|
|
the spring constants restraining translational motion and deflection |
| 159 |
|
|
of and rotation around the principle axis of the molecule |
| 160 |
|
|
respectively. These spring constants are typically calculated from |
| 161 |
|
|
the mean-square displacements of water molecules in an unrestrained |
| 162 |
chrisfen |
2981 |
ice crystal at 200~K. For these studies, $K_\mathrm{v} = |
| 163 |
|
|
4.29$~kcal~mol$^{-1}$~\AA$^{-2}$, $K_\theta\ = |
| 164 |
|
|
13.88$~kcal~mol$^{-1}$~rad$^{-2}$, and $K_\omega\ = |
| 165 |
|
|
17.75$~kcal~mol$^{-1}$~rad$^{-2}$. It is clear from |
| 166 |
|
|
Fig. \ref{fig:waterSpring} that the values of $\theta$ range from $0$ |
| 167 |
|
|
to $\pi$, while $\omega$ ranges from $-\pi$ to $\pi$. The partition |
| 168 |
chrisfen |
2979 |
function for a molecular crystal restrained in this fashion can be |
| 169 |
|
|
evaluated analytically, and the Helmholtz Free Energy ({\it A}) is |
| 170 |
|
|
given by |
| 171 |
|
|
\begin{equation} |
| 172 |
|
|
\begin{split} |
| 173 |
|
|
A = E_m &- kT\ln\left(\frac{kT}{h\nu}\right)^3 \\ |
| 174 |
|
|
&- kT\ln\left[\pi^\frac{1}{2}\left( |
| 175 |
|
|
\frac{8\pi^2I_\mathrm{A}kT}{h^2}\right)^\frac{1}{2} |
| 176 |
|
|
\left(\frac{8\pi^2I_\mathrm{B}kT}{h^2}\right)^\frac{1}{2} |
| 177 |
|
|
\left(\frac{8\pi^2I_\mathrm{C}kT}{h^2}\right)^\frac{1}{2} |
| 178 |
|
|
\right] \\ |
| 179 |
|
|
&- kT\ln\left[\frac{kT}{2(\pi K_\omega K_\theta)^{\frac{1}{2}}} |
| 180 |
|
|
\exp\left(-\frac{kT}{2K_\theta}\right) |
| 181 |
|
|
\int_0^{\left(\frac{kT}{2K_\theta}\right)^\frac{1}{2}} |
| 182 |
|
|
\exp(t^2)\mathrm{d}t\right], |
| 183 |
|
|
\end{split} |
| 184 |
chrisfen |
2978 |
\label{eq:ecFreeEnergy} |
| 185 |
chrisfen |
2979 |
\end{equation} |
| 186 |
|
|
where $2\pi\nu = (K_\mathrm{v}/m)^{1/2}$, and $E_m$ is the minimum |
| 187 |
|
|
potential energy of the ideal crystal.\cite{Baez95a} The choice of an |
| 188 |
chrisfen |
2981 |
Einstein crystal reference state is somewhat arbitrary. Any ideal |
| 189 |
chrisfen |
2979 |
system for which the partition function is known exactly could be used |
| 190 |
|
|
as a reference point as long as the system does not undergo a phase |
| 191 |
|
|
transition during the integration path between the real and ideal |
| 192 |
|
|
systems. Nada and van der Eerden have shown that the use of different |
| 193 |
chrisfen |
2981 |
force constants in the Einstein crystal does not affect the total |
| 194 |
chrisfen |
2979 |
free energy, and Gao {\it et al.} have shown that free energies |
| 195 |
|
|
computed with the Debye crystal reference state differ from the |
| 196 |
chrisfen |
2981 |
Einstein crystal by only a few tenths of a |
| 197 |
|
|
kJ~mol$^{-1}$.\cite{Nada03,Gao00} These free energy differences can |
| 198 |
|
|
lead to some uncertainty in the computed melting point of the solids. |
| 199 |
chrisfen |
2977 |
\begin{figure} |
| 200 |
|
|
\centering |
| 201 |
|
|
\includegraphics[width=3.5in]{./figures/rotSpring.pdf} |
| 202 |
|
|
\caption{Possible orientational motions for a restrained molecule. |
| 203 |
|
|
$\theta$ angles correspond to displacement from the body-frame {\it |
| 204 |
|
|
z}-axis, while $\omega$ angles correspond to rotation about the |
| 205 |
|
|
body-frame {\it z}-axis. $K_\theta$ and $K_\omega$ are spring |
| 206 |
|
|
constants for the harmonic springs restraining motion in the $\theta$ |
| 207 |
|
|
and $\omega$ directions.} |
| 208 |
chrisfen |
2979 |
\label{fig:waterSpring} |
| 209 |
chrisfen |
2977 |
\end{figure} |
| 210 |
|
|
|
| 211 |
chrisfen |
2979 |
In the case of molecular liquids, the ideal vapor is chosen as the |
| 212 |
|
|
target reference state. There are several examples of liquid state |
| 213 |
|
|
free energy calculations of water models present in the |
| 214 |
|
|
literature.\cite{Hermens88,Quintana92,Mezei92,Baez95b} These methods |
| 215 |
|
|
typically differ in regard to the path taken for switching off the |
| 216 |
|
|
interaction potential to convert the system to an ideal gas of water |
| 217 |
|
|
molecules. In this study, we applied one of the most convenient |
| 218 |
|
|
methods and integrated over the $\lambda^4$ path, where all |
| 219 |
|
|
interaction parameters are scaled equally by this transformation |
| 220 |
|
|
parameter. This method has been shown to be reversible and provide |
| 221 |
|
|
results in excellent agreement with other established |
| 222 |
|
|
methods.\cite{Baez95b} |
| 223 |
chrisfen |
2977 |
|
| 224 |
chrisfen |
2979 |
Near the cutoff radius ($0.85 * r_{cut}$), charge, dipole, and |
| 225 |
|
|
Lennard-Jones interactions were gradually reduced by a cubic switching |
| 226 |
|
|
function. By applying this function, these interactions are smoothly |
| 227 |
|
|
truncated, thereby avoiding the poor energy conservation which results |
| 228 |
|
|
from harsher truncation schemes. The effect of a long-range |
| 229 |
|
|
correction was also investigated on select model systems in a variety |
| 230 |
|
|
of manners. For the SSD/RF model, a reaction field with a fixed |
| 231 |
|
|
dielectric constant of 80 was applied in all |
| 232 |
|
|
simulations.\cite{Onsager36} For a series of the least computationally |
| 233 |
|
|
expensive models (SSD/E, SSD/RF, TIP3P, and SPC/E), simulations were |
| 234 |
chrisfen |
2981 |
performed with longer cutoffs of 10.5, 12, 13.5, and 15~\AA\ to |
| 235 |
|
|
compare with the 9~\AA\ cutoff results. Finally, the effects of using |
| 236 |
chrisfen |
2979 |
the Ewald summation were estimated for TIP3P and SPC/E by performing |
| 237 |
|
|
single configuration Particle-Mesh Ewald (PME) calculations for each |
| 238 |
|
|
of the ice polymorphs.\cite{Ponder87} The calculated energy difference |
| 239 |
|
|
in the presence and absence of PME was applied to the previous results |
| 240 |
|
|
in order to predict changes to the free energy landscape. |
| 241 |
chrisfen |
2977 |
|
| 242 |
chrisfen |
2979 |
\section{Initial Free Energy Results} |
| 243 |
chrisfen |
2977 |
|
| 244 |
chrisfen |
2979 |
The calculated free energies of proton-ordered variants of three low |
| 245 |
|
|
density polymorphs (I$_\textrm{h}$, I$_\textrm{c}$, and Ice-{\it i} or |
| 246 |
|
|
Ice-$i^\prime$) and the stable higher density ice B are listed in |
| 247 |
|
|
table \ref{tab:freeEnergy}. Ice B was included because it has been |
| 248 |
|
|
shown to be a minimum free energy structure for SPC/E at ambient |
| 249 |
|
|
conditions.\cite{Baez95b} In addition to the free energies, the |
| 250 |
|
|
relevant transition temperatures at standard pressure are also |
| 251 |
|
|
displayed in table \ref{tab:freeEnergy}. These free energy values |
| 252 |
|
|
indicate that Ice-{\it i} is the most stable state for all of the |
| 253 |
|
|
investigated water models. With the free energy at these state |
| 254 |
|
|
points, the Gibbs-Helmholtz equation was used to project to other |
| 255 |
|
|
state points and to build phase diagrams. Figures |
| 256 |
|
|
\ref{fig:tp3PhaseDia} and \ref{fig:ssdrfPhaseDia} are example diagrams |
| 257 |
|
|
built from the results for the TIP3P and SSD/RF water models. All |
| 258 |
|
|
other models have similar structure, although the crossing points |
| 259 |
|
|
between the phases move to different temperatures and pressures as |
| 260 |
|
|
indicated from the transition temperatures in table |
| 261 |
|
|
\ref{tab:freeEnergy}. It is interesting to note that ice |
| 262 |
|
|
I$_\textrm{h}$ (and ice I$_\textrm{c}$ for that matter) do not appear |
| 263 |
|
|
in any of the phase diagrams for any of the models. For purposes of |
| 264 |
|
|
this study, ice B is representative of the dense ice polymorphs. A |
| 265 |
|
|
recent study by Sanz {\it et al.} provides details on the phase |
| 266 |
|
|
diagrams for SPC/E and TIP4P at higher pressures than those studied |
| 267 |
|
|
here.\cite{Sanz04} |
| 268 |
chrisfen |
2978 |
\begin{table} |
| 269 |
|
|
\centering |
| 270 |
chrisfen |
2979 |
\caption{HELMHOLTZ FREE ENERGIES AND TRANSITION TEMPERATURES AT 1 |
| 271 |
|
|
ATMOSPHERE FOR SEVERAL WATER MODELS} |
| 272 |
|
|
|
| 273 |
|
|
\footnotesize |
| 274 |
|
|
\begin{tabular}{lccccccc} |
| 275 |
chrisfen |
2978 |
\toprule |
| 276 |
|
|
\toprule |
| 277 |
chrisfen |
2979 |
Water Model & I$_\textrm{h}$ & I$_\textrm{c}$ & B & Ice-{\it i} & Ice-$i^\prime$ & $T_\textrm{m}$ (*$T_\textrm{s}$) & $T_\textrm{b}$\\ |
| 278 |
|
|
\cmidrule(lr){2-6} |
| 279 |
|
|
\cmidrule(l){7-8} |
| 280 |
|
|
& \multicolumn{5}{c}{(kcal mol$^{-1}$)} & \multicolumn{2}{c}{(K)}\\ |
| 281 |
chrisfen |
2978 |
\midrule |
| 282 |
chrisfen |
2986 |
TIP5P & -11.85(3) & -11.86(2) & -11.96(2) & - & -12.29(2) & 266(7) & 337(4)\\ |
| 283 |
|
|
TIP4P & -11.84(3) & -12.04(2) & -12.08(3) & - & -12.33(3) & 262(6) & 354(4)\\ |
| 284 |
chrisfen |
2979 |
TIP3P & -11.41(2) & -11.23(3) & -11.82(3) & -12.30(3) & - & 269(7) & 357(4)\\ |
| 285 |
|
|
SPC/E & -12.87(2) & -13.05(2) & -13.26(3) & - & -13.55(2) & 299(6) & 396(4)\\ |
| 286 |
|
|
SSD/E & -11.27(2) & -11.19(4) & -12.09(2) & -12.54(2) & - & *355(4) & -\\ |
| 287 |
|
|
SSD/RF & -11.96(2) & -11.60(2) & -12.53(3) & -12.79(2) & - & 278(7) & 382(4)\\ |
| 288 |
chrisfen |
2978 |
\bottomrule |
| 289 |
chrisfen |
2977 |
\end{tabular} |
| 290 |
chrisfen |
2978 |
\label{tab:freeEnergy} |
| 291 |
|
|
\end{table} |
| 292 |
chrisfen |
2977 |
|
| 293 |
|
|
\begin{figure} |
| 294 |
|
|
\centering |
| 295 |
|
|
\includegraphics[width=\linewidth]{./figures/tp3PhaseDia.pdf} |
| 296 |
|
|
\caption{Phase diagram for the TIP3P water model in the low pressure |
| 297 |
|
|
regime. The displayed $T_m$ and $T_b$ values are good predictions of |
| 298 |
|
|
the experimental values; however, the solid phases shown are not the |
| 299 |
|
|
experimentally observed forms. Both cubic and hexagonal ice $I$ are |
| 300 |
|
|
higher in energy and don't appear in the phase diagram.} |
| 301 |
chrisfen |
2979 |
\label{fig:tp3PhaseDia} |
| 302 |
chrisfen |
2977 |
\end{figure} |
| 303 |
|
|
|
| 304 |
|
|
\begin{figure} |
| 305 |
|
|
\centering |
| 306 |
|
|
\includegraphics[width=\linewidth]{./figures/ssdrfPhaseDia.pdf} |
| 307 |
|
|
\caption{Phase diagram for the SSD/RF water model in the low pressure |
| 308 |
|
|
regime. Calculations producing these results were done under an |
| 309 |
|
|
applied reaction field. It is interesting to note that this |
| 310 |
|
|
computationally efficient model (over 3 times more efficient than |
| 311 |
|
|
TIP3P) exhibits phase behavior similar to the less computationally |
| 312 |
|
|
conservative charge based models.} |
| 313 |
chrisfen |
2979 |
\label{fig:ssdrfPhaseDia} |
| 314 |
chrisfen |
2977 |
\end{figure} |
| 315 |
|
|
|
| 316 |
chrisfen |
2981 |
We note that all of the crystals investigated in this study are ideal |
| 317 |
chrisfen |
2979 |
proton-ordered antiferroelectric structures. All of the structures |
| 318 |
|
|
obey the Bernal-Fowler rules and should be able to form stable |
| 319 |
|
|
proton-{\it disordered} crystals which have the traditional |
| 320 |
chrisfen |
2981 |
$k_\textrm{B}$ln(3/2) residual entropy at 0~K.\cite{Bernal33,Pauling35} |
| 321 |
chrisfen |
2979 |
Simulations of proton-disordered structures are relatively unstable |
| 322 |
|
|
with all but the most expensive water models.\cite{Nada03} Our |
| 323 |
|
|
simulations have therefore been performed with the ordered |
| 324 |
|
|
antiferroelectric structures which do not require the residual entropy |
| 325 |
|
|
term to be accounted for in the free energies. This may result in some |
| 326 |
|
|
discrepancies when comparing our melting temperatures to the melting |
| 327 |
|
|
temperatures that have been calculated via thermodynamic integrations |
| 328 |
|
|
of the disordered structures.\cite{Sanz04} |
| 329 |
chrisfen |
2977 |
|
| 330 |
chrisfen |
2979 |
Most of the water models have melting points that compare quite |
| 331 |
chrisfen |
2981 |
favorably with the experimental value of 273~K. The unfortunate |
| 332 |
chrisfen |
2979 |
aspect of this result is that this phase change occurs between |
| 333 |
|
|
Ice-{\it i} and the liquid state rather than ice I$_h$ and the liquid |
| 334 |
|
|
state. These results do not contradict other studies. Studies of ice |
| 335 |
chrisfen |
2981 |
I$_h$ using TIP4P predict a $T_m$ ranging from 191 to 238~K |
| 336 |
chrisfen |
2978 |
(differences being attributed to choice of interaction truncation and |
| 337 |
|
|
different ordered and disordered molecular |
| 338 |
chrisfen |
2979 |
arrangements).\cite{Nada03,Vlot99,Gao00,Sanz04} If the presence of ice |
| 339 |
chrisfen |
2981 |
B and Ice-{\it i} were omitted, a $T_\textrm{m}$ value around 200~K |
| 340 |
chrisfen |
2979 |
would be predicted from this work. However, the $T_\textrm{m}$ from |
| 341 |
chrisfen |
2981 |
Ice-{\it i} is calculated to be 262~K, indicating that these |
| 342 |
chrisfen |
2979 |
simulation based structures ought to be included in studies probing |
| 343 |
|
|
phase transitions with this model. Also of interest in these results |
| 344 |
|
|
is that SSD/E does not exhibit a melting point at 1 atm but does |
| 345 |
chrisfen |
2981 |
sublime at 355~K. This is due to the significant stability of |
| 346 |
chrisfen |
2979 |
Ice-{\it i} over all other polymorphs for this particular model under |
| 347 |
|
|
these conditions. While troubling, this behavior resulted in the |
| 348 |
|
|
spontaneous crystallization of Ice-{\it i} which led us to investigate |
| 349 |
|
|
this structure. These observations provide a warning that simulations |
| 350 |
chrisfen |
2981 |
of SSD/E as a ``liquid'' near 300~K are actually metastable and run |
| 351 |
chrisfen |
2979 |
the risk of spontaneous crystallization. However, when a longer |
| 352 |
|
|
cutoff radius is used, SSD/E prefers the liquid state under standard |
| 353 |
|
|
temperature and pressure. |
| 354 |
chrisfen |
2977 |
|
| 355 |
chrisfen |
2981 |
\section{Effects of Potential Truncation} |
| 356 |
chrisfen |
2979 |
|
| 357 |
chrisfen |
2977 |
\begin{figure} |
| 358 |
|
|
\includegraphics[width=\linewidth]{./figures/cutoffChange.pdf} |
| 359 |
chrisfen |
2979 |
\caption{Free energy as a function of cutoff radius for SSD/E, TIP3P, |
| 360 |
|
|
SPC/E, SSD/RF with a reaction field, and the TIP3P and SPC/E models |
| 361 |
|
|
with an added Ewald correction term. Error for the larger cutoff |
| 362 |
chrisfen |
2981 |
points is equivalent to that observed at 9.0~\AA\ (see Table |
| 363 |
chrisfen |
2979 |
\ref{tab:freeEnergy}). Data for ice I$_\textrm{c}$ with TIP3P using |
| 364 |
chrisfen |
2981 |
both 12 and 13.5~\AA\ cutoffs were omitted because the crystal was |
| 365 |
|
|
prone to distortion and melting at 200~K. Ice-$i^\prime$ is the |
| 366 |
chrisfen |
2979 |
form of Ice-{\it i} used in the SPC/E simulations.} |
| 367 |
chrisfen |
2978 |
\label{fig:incCutoff} |
| 368 |
chrisfen |
2977 |
\end{figure} |
| 369 |
|
|
|
| 370 |
chrisfen |
2979 |
For the more computationally efficient water models, we have also |
| 371 |
chrisfen |
2981 |
investigated the effect of potential truncation on the computed free |
| 372 |
chrisfen |
2979 |
energies as a function of the cutoff radius. As seen in |
| 373 |
|
|
Fig. \ref{fig:incCutoff}, the free energies of the ice polymorphs with |
| 374 |
|
|
water models lacking a long-range correction show significant cutoff |
| 375 |
|
|
dependence. In general, there is a narrowing of the free energy |
| 376 |
|
|
differences while moving to greater cutoff radii. As the free |
| 377 |
|
|
energies for the polymorphs converge, the stability advantage that |
| 378 |
|
|
Ice-{\it i} exhibits is reduced. Adjacent to each of these plots are |
| 379 |
|
|
results for systems with applied or estimated long-range corrections. |
| 380 |
|
|
SSD/RF was parametrized for use with a reaction field, and the benefit |
| 381 |
|
|
provided by this computationally inexpensive correction is apparent. |
| 382 |
|
|
The free energies are largely independent of the size of the reaction |
| 383 |
|
|
field cavity in this model, so small cutoff radii mimic bulk |
| 384 |
|
|
calculations quite well under SSD/RF. |
| 385 |
|
|
|
| 386 |
chrisfen |
2981 |
Although TIP3P was parametrized for use without the Ewald summation, |
| 387 |
chrisfen |
2979 |
we have estimated the effect of this method for computing long-range |
| 388 |
|
|
electrostatics for both TIP3P and SPC/E. This was accomplished by |
| 389 |
|
|
calculating the potential energy of identical crystals both with and |
| 390 |
|
|
without particle mesh Ewald (PME). Similar behavior to that observed |
| 391 |
|
|
with reaction field is seen for both of these models. The free |
| 392 |
|
|
energies show reduced dependence on cutoff radius and span a narrower |
| 393 |
|
|
range for the various polymorphs. Like the dipolar water models, |
| 394 |
|
|
TIP3P displays a relatively constant preference for the Ice-{\it i} |
| 395 |
|
|
polymorph. Crystal preference is much more difficult to determine for |
| 396 |
|
|
SPC/E. Without a long-range correction, each of the polymorphs |
| 397 |
|
|
studied assumes the role of the preferred polymorph under different |
| 398 |
|
|
cutoff radii. The inclusion of the Ewald correction flattens and |
| 399 |
|
|
narrows the gap in free energies such that the polymorphs are |
| 400 |
|
|
isoenergetic within statistical uncertainty. This suggests that other |
| 401 |
|
|
conditions, such as the density in fixed-volume simulations, can |
| 402 |
|
|
influence the polymorph expressed upon crystallization. |
| 403 |
chrisfen |
2977 |
|
| 404 |
chrisfen |
2979 |
\section{Expanded Results Using Damped Shifted Force Electrostatics} |
| 405 |
chrisfen |
2977 |
|
| 406 |
chrisfen |
2986 |
In chapter \ref{chap:electrostatics}, we discussed in detail a |
| 407 |
|
|
pairwise method for handling electrostatics (shifted force, {\sc sf}) |
| 408 |
|
|
that can be used as a simple and efficient replacement for the Ewald |
| 409 |
|
|
summation. Answering the question of the free energies of these ice |
| 410 |
|
|
polymorphs with varying water models would be an interesting |
| 411 |
|
|
application of this technique. To this end, we set up thermodynamic |
| 412 |
|
|
integrations of all of the previously discussed ice polymorphs using |
| 413 |
|
|
the {\sc sf} technique with a cutoff radius of 12~\AA\ and an $\alpha$ |
| 414 |
|
|
of 0.2125~\AA . These calculations were performed on TIP5P-E and |
| 415 |
|
|
TIP4P-Ew (variants of the root models optimized for the Ewald |
| 416 |
|
|
summation) as well as SPC/E, SSD/RF, and TRED (see section |
| 417 |
|
|
\ref{sec:tredWater}). |
| 418 |
chrisfen |
2977 |
|
| 419 |
chrisfen |
2986 |
\begin{table} |
| 420 |
|
|
\centering |
| 421 |
|
|
\caption{HELMHOLTZ FREE ENERGIES OF ICE POLYMORPHS USING THE DAMPED |
| 422 |
|
|
SHIFTED FORCE CORRECTION} |
| 423 |
|
|
\begin{tabular}{ lccccc } |
| 424 |
|
|
\toprule |
| 425 |
|
|
\toprule |
| 426 |
|
|
Model & I$_\textrm{h}$ & I$_\textrm{c}$ & B & Ice-$i$ & Ice-$i^\prime$ \\ |
| 427 |
|
|
\cmidrule(lr){2-6} |
| 428 |
|
|
& \multicolumn{5}{c}{(kcal mol$^{-1}$)} \\ |
| 429 |
|
|
\midrule |
| 430 |
|
|
TIP5P-E & -10.76(4) & -10.72(4) & & - & -10.68(4) \\ |
| 431 |
|
|
TIP4P-Ew & & -11.77(3) & & - & -11.60(3) \\ |
| 432 |
|
|
SPC/E & -12.98(3) & -11.60(3) & & - & -12.93(3) \\ |
| 433 |
|
|
SSD/RF & -11.81(4) & -11.65(3) & & -12.41(4) & - \\ |
| 434 |
|
|
TRED & -12.58(3) & -12.44(3) & & -13.09(4) & - \\ |
| 435 |
|
|
\end{tabular} |
| 436 |
|
|
\label{tab:dampedFreeEnergy} |
| 437 |
|
|
\end{table} |
| 438 |
|
|
|
| 439 |
|
|
|
| 440 |
chrisfen |
2977 |
\section{Conclusions} |
| 441 |
|
|
|
| 442 |
chrisfen |
2979 |
In this work, thermodynamic integration was used to determine the |
| 443 |
|
|
absolute free energies of several ice polymorphs. The new polymorph, |
| 444 |
|
|
Ice-{\it i} was observed to be the stable crystalline state for {\it |
| 445 |
chrisfen |
2981 |
all} the water models when using a 9.0~\AA\ cutoff. However, the free |
| 446 |
chrisfen |
2979 |
energy partially depends on simulation conditions (particularly on the |
| 447 |
|
|
choice of long range correction method). Regardless, Ice-{\it i} was |
| 448 |
chrisfen |
2981 |
still observed to be a stable polymorph for all of the studied water |
| 449 |
chrisfen |
2979 |
models. |
| 450 |
chrisfen |
2977 |
|
| 451 |
chrisfen |
2979 |
So what is the preferred solid polymorph for simulated water? As |
| 452 |
|
|
indicated above, the answer appears to be dependent both on the |
| 453 |
|
|
conditions and the model used. In the case of short cutoffs without a |
| 454 |
|
|
long-range interaction correction, Ice-{\it i} and Ice-$i^\prime$ have |
| 455 |
|
|
the lowest free energy of the studied polymorphs with all the models. |
| 456 |
|
|
Ideally, crystallization of each model under constant pressure |
| 457 |
|
|
conditions, as was done with SSD/E, would aid in the identification of |
| 458 |
|
|
their respective preferred structures. This work, however, helps |
| 459 |
|
|
illustrate how studies involving one specific model can lead to |
| 460 |
|
|
insight about important behavior of others. |
| 461 |
|
|
|
| 462 |
|
|
We also note that none of the water models used in this study are |
| 463 |
|
|
polarizable or flexible models. It is entirely possible that the |
| 464 |
|
|
polarizability of real water makes Ice-{\it i} substantially less |
| 465 |
|
|
stable than ice I$_h$. However, the calculations presented above seem |
| 466 |
|
|
interesting enough to communicate before the role of polarizability |
| 467 |
|
|
(or flexibility) has been thoroughly investigated. |
| 468 |
|
|
|
| 469 |
|
|
Finally, due to the stability of Ice-{\it i} in the investigated |
| 470 |
|
|
simulation conditions, the question arises as to possible experimental |
| 471 |
|
|
observation of this polymorph. The rather extensive past and current |
| 472 |
|
|
experimental investigation of water in the low pressure regime makes |
| 473 |
|
|
us hesitant to ascribe any relevance to this work outside of the |
| 474 |
|
|
simulation community. It is for this reason that we chose a name for |
| 475 |
|
|
this polymorph which involves an imaginary quantity. That said, there |
| 476 |
|
|
are certain experimental conditions that would provide the most ideal |
| 477 |
|
|
situation for possible observation. These include the negative |
| 478 |
|
|
pressure or stretched solid regime, small clusters in vacuum |
| 479 |
chrisfen |
2977 |
deposition environments, and in clathrate structures involving small |
| 480 |
chrisfen |
2979 |
non-polar molecules. For the purpose of comparison with experimental |
| 481 |
|
|
results, we have calculated the oxygen-oxygen pair correlation |
| 482 |
|
|
function, $g_\textrm{OO}(r)$, and the structure factor, $S(\vec{q})$ |
| 483 |
|
|
for the two Ice-{\it i} variants (along with example ice |
| 484 |
chrisfen |
2981 |
I$_\textrm{h}$ and I$_\textrm{c}$ plots) at 77~K, and they are shown in |
| 485 |
chrisfen |
2979 |
figures \ref{fig:gofr} and \ref{fig:sofq} respectively. It is |
| 486 |
|
|
interesting to note that the structure factors for Ice-$i^\prime$ and |
| 487 |
|
|
Ice-I$_c$ are quite similar. The primary differences are small peaks |
| 488 |
chrisfen |
2981 |
at 1.125, 2.29, and 2.53~\AA$^{-1}$, so particular attention to these |
| 489 |
chrisfen |
2979 |
regions would be needed to identify the new $i^\prime$ variant from |
| 490 |
|
|
the I$_\textrm{c}$ polymorph. |
| 491 |
chrisfen |
2977 |
|
| 492 |
chrisfen |
2979 |
|
| 493 |
chrisfen |
2977 |
\begin{figure} |
| 494 |
|
|
\includegraphics[width=\linewidth]{./figures/iceGofr.pdf} |
| 495 |
chrisfen |
2978 |
\caption{Radial distribution functions of Ice-{\it i} and ice |
| 496 |
|
|
I$_\textrm{c}$ calculated from from simulations of the SSD/RF water |
| 497 |
chrisfen |
2981 |
model at 77~K.} |
| 498 |
chrisfen |
2977 |
\label{fig:gofr} |
| 499 |
|
|
\end{figure} |
| 500 |
|
|
|
| 501 |
|
|
\begin{figure} |
| 502 |
|
|
\includegraphics[width=\linewidth]{./figures/sofq.pdf} |
| 503 |
chrisfen |
2978 |
\caption{Predicted structure factors for Ice-{\it i} and ice |
| 504 |
chrisfen |
2981 |
I$_\textrm{c}$ at 77~K. The raw structure factors have been |
| 505 |
|
|
convoluted with a gaussian instrument function (0.075~\AA$^{-1}$ |
| 506 |
|
|
width) to compensate for the truncation effects in our finite size |
| 507 |
chrisfen |
2978 |
simulations. The labeled peaks compared favorably with ``spurious'' |
| 508 |
|
|
peaks observed in experimental studies of amorphous solid |
| 509 |
|
|
water.\cite{Bizid87}} |
| 510 |
chrisfen |
2977 |
\label{fig:sofq} |
| 511 |
|
|
\end{figure} |
| 512 |
|
|
|