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Revision 2973 by chrisfen, Fri Aug 18 15:49:29 2006 UTC vs.
Revision 2978 by chrisfen, Sun Aug 27 19:34:53 2006 UTC

# Line 2 | Line 2
2   %% http://bibdesk.sourceforge.net/
3  
4  
5 < %% Created for Chris Fennell at 2006-08-16 10:43:59 -0400
5 > %% Created for Chris Fennell at 2006-08-27 13:56:37 -0400
6  
7  
8   %% Saved with string encoding Western (ASCII)
# Line 45 | Line 45
45   @string{rmp = {Rev. Mod. Phys.}}
46  
47  
48 + @article{Kindt96,
49 +        Author = {J.~T. Kindt and C.~A. Schmuttenmaer},
50 +        Date-Added = {2006-08-27 13:55:26 -0400},
51 +        Date-Modified = {2006-08-27 13:56:35 -0400},
52 +        Journal = {J. Phys. Chem.},
53 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Kindt_FarIRDielectricOfPolarLiquids_96.pdf},
54 +        Number = {24},
55 +        Pages = {10373-10379},
56 +        Title = {Far-Infrared Dielectric Properties of Polar Liquids Probed by Femtosecond Terahertz Pulse Spectroscopy},
57 +        Volume = {100},
58 +        Year = {1996}}
59 +
60 + @article{Freddolino06,
61 +        Author = {P.~L. Freddolino and A.~S. Arkhipov and S.~B. Larson and A. McPherson and K. Schulten},
62 +        Date-Added = {2006-08-24 16:11:43 -0400},
63 +        Date-Modified = {2006-08-24 16:14:03 -0400},
64 +        Doi = {10.1016/j.str.2005.11.014},
65 +        Journal = {Structure},
66 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Freddolino_VirusSimulation_06.pdf},
67 +        Pages = {437-449},
68 +        Title = {Molecular Dynamics Simulations of the Complete Satellite Tobacco Mosaic Virus},
69 +        Volume = {14},
70 +        Year = {2006}}
71 +
72 + @article{Gillen72,
73 +        Author = {K.~T. Gillen and D.~C. Douglas and M.~J.~R. Hoch},
74 +        Date-Added = {2006-08-24 10:40:48 -0400},
75 +        Date-Modified = {2006-08-24 10:41:10 -0400},
76 +        Journal = jcp,
77 +        Pages = {5117-5119},
78 +        Title = {Self-Diffusion in Liquid Water to $-31^\circ$~\uppercase{C}},
79 +        Volume = 57,
80 +        Year = 1972}
81 +
82 + @book{Rothschild84,
83 +        Address = {New York},
84 +        Author = {W.~G. Rothschild},
85 +        Date-Added = {2006-08-24 10:35:25 -0400},
86 +        Date-Modified = {2006-08-24 10:35:25 -0400},
87 +        Publisher = {John Wiley \& Sons, Inc.},
88 +        Title = {Dynamics of Molecular Liquids},
89 +        Year = 1984}
90 +
91 + @article{Krynicki66,
92 +        Author = {K. Krynicki},
93 +        Date-Added = {2006-08-24 10:34:29 -0400},
94 +        Date-Modified = {2006-08-24 10:35:05 -0400},
95 +        Journal = {Physica},
96 +        Pages = {167-178},
97 +        Title = {PROTON SPIN-LATTICE RELAXATION IN PURE WATER BETWEEN 0$^\circ$\uppercase{C} AND 100$^\circ$\uppercase{C}},
98 +        Volume = 32,
99 +        Year = 1966}
100 +
101 + @book{Eisenberg69,
102 +        Address = {Oxford},
103 +        Author = {D. Eisenberg and W. Kauzmann},
104 +        Date-Added = {2006-08-24 10:33:59 -0400},
105 +        Date-Modified = {2006-08-24 10:33:59 -0400},
106 +        Publisher = {Oxford University Press},
107 +        Title = {The Structure and Properties of Water},
108 +        Year = 1969}
109 +
110 + @article{Mills73,
111 +        Author = {R. Mills},
112 +        Date-Added = {2006-08-24 10:24:33 -0400},
113 +        Date-Modified = {2006-08-24 10:25:04 -0400},
114 +        Journal = jpc,
115 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Mills_Diffuse_73.pdf},
116 +        Number = 5,
117 +        Pages = {685-688},
118 +        Title = {Self-Diffusion in Normal and Heavy Water in the Range 1-45$^\circ$},
119 +        Volume = 77,
120 +        Year = 1973}
121 +
122 + @article{Barriol64,
123 +        Author = {J. Barriol and A. Weisbecker},
124 +        Date-Added = {2006-08-24 10:23:25 -0400},
125 +        Date-Modified = {2006-08-24 10:23:39 -0400},
126 +        Journal = {Compt. Rend. Acad. Sc. Paris},
127 +        Pages = {4643-4645},
128 +        Title = {Contribution \`{a} l'\'{e}tude di\'{e}lectrique des liquides associ\'{e}s par liaisons hydrog\'{e}ne},
129 +        Volume = 259,
130 +        Year = 1964}
131 +
132 + @article{Badyal00,
133 +        Author = {Y.~S. Badyal and M.~-L. Saboungi and D.~L. Price and S.~D. Shastri and D.~R. Haeffner and A.~K. Soper},
134 +        Date-Added = {2006-08-24 10:21:10 -0400},
135 +        Date-Modified = {2006-08-24 10:22:49 -0400},
136 +        Journal = jcp,
137 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Badyal_ElectronDistributionInH2O_00.pdf},
138 +        Number = 21,
139 +        Pages = {9206-9208},
140 +        Title = {Electron distribution in water},
141 +        Volume = 112,
142 +        Year = 2000}
143 +
144 + @article{Gubskaya02,
145 +        Author = {A.~V. Gubskaya and P.~G. Kusalik},
146 +        Date-Added = {2006-08-24 10:17:41 -0400},
147 +        Date-Modified = {2006-08-24 10:18:37 -0400},
148 +        Journal = jcp,
149 +        Number = 11,
150 +        Pages = {5290-5302},
151 +        Title = {The total molecular dipole moment for liquid water},
152 +        Volume = 117,
153 +        Year = 2002}
154 +
155 + @article{Sprik91,
156 +        Author = {M. Sprik},
157 +        Date-Added = {2006-08-24 10:10:41 -0400},
158 +        Date-Modified = {2006-08-24 10:17:06 -0400},
159 +        Journal = jcp,
160 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Sprik_HBondingAndStaticDielectricInH2O_91.pdf},
161 +        Number = 9,
162 +        Pages = {6762-6769},
163 +        Title = {Hydrogen bonding and the static dielectric constant in liquid water},
164 +        Volume = 95,
165 +        Year = 1991}
166 +
167 + @article{Nezbeda02,
168 +        Author = {M. Lisal and J. Kolafa and I. Nezbeda},
169 +        Date-Added = {2006-08-24 10:08:19 -0400},
170 +        Date-Modified = {2006-08-24 10:08:37 -0400},
171 +        Journal = jcp,
172 +        Number = 19,
173 +        Pages = {8892-8897},
174 +        Title = {An examination of the five-site potential (\uppercase{TIP5P}) for water},
175 +        Volume = 117,
176 +        Year = 2002}
177 +
178 + @article{Rahman72,
179 +        Author = {A. Rahman and F.~H. Stillinger},
180 +        Date-Added = {2006-08-24 10:03:48 -0400},
181 +        Date-Modified = {2006-08-24 10:09:05 -0400},
182 +        Journal = jcp,
183 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Ice_Simulations/Rahman_ProtonDistributionInIce_72.pdf},
184 +        Number = 9,
185 +        Pages = {4009-4017},
186 +        Title = {Proton Distribution in Ice and the \uppercase{K}irkwood Correlation Factor},
187 +        Volume = 57,
188 +        Year = 1972}
189 +
190 + @article{Bernal33,
191 +        Author = {J.~D. Bernal and R.~H. Fowler},
192 +        Date-Added = {2006-08-24 09:58:00 -0400},
193 +        Date-Modified = {2006-08-24 09:59:43 -0400},
194 +        Journal = {J. Chem. Phys.},
195 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Bernal_TheoryOfWater_33.pdf},
196 +        Number = {8},
197 +        Pages = {515-548},
198 +        Title = {A Theory of Water and Ionic Solution with Particular Reference to Hydrogen and Hydroxyl Ions},
199 +        Volume = {1},
200 +        Year = {1933}}
201 +
202 + @article{Hoover86,
203 +        Author = {W.~G. Hoover},
204 +        Date-Added = {2006-08-24 09:53:21 -0400},
205 +        Date-Modified = {2006-08-24 09:53:21 -0400},
206 +        Journal = pra,
207 +        Number = 3,
208 +        Pages = {2499-2500},
209 +        Title = {Constant-pressure equations of motion},
210 +        Volume = 34,
211 +        Year = 1986}
212 +
213 + @article{Fennell06,
214 +        Author = {C.~J. Fennell and J.~D. Gezelter},
215 +        Date-Added = {2006-08-24 09:49:57 -0400},
216 +        Date-Modified = {2006-08-24 09:49:57 -0400},
217 +        Doi = {10.1063/1.2206581},
218 +        Journal = {J. Chem. Phys.},
219 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Fennell_PairwiseSummationMethods_06.pdf},
220 +        Number = {23},
221 +        Pages = {234104(12)},
222 +        Rating = {5},
223 +        Read = {Yes},
224 +        Title = {Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics},
225 +        Volume = {124},
226 +        Year = {2006}}
227 +
228 + @article{Evans77b,
229 +        Author = {D.~J. Evans and S. Murad},
230 +        Date-Added = {2006-08-22 14:23:16 -0400},
231 +        Date-Modified = {2006-08-22 14:23:16 -0400},
232 +        Journal = {Mol. Phys.},
233 +        Pages = {327-331},
234 +        Title = {Singularity-free algorithm for molecular dynamics simulation of rigid polyatomics},
235 +        Volume = 34,
236 +        Year = 1977}
237 +
238   @article{Aguado03,
239          Author = {A. Aguado and P.~A. Madden},
240          Date-Added = {2006-08-16 10:42:15 -0400},
# Line 274 | Line 464
464   @article{Rick04,
465          Author = {S.~W. Rick},
466          Date-Added = {2006-07-18 10:49:48 -0400},
467 <        Date-Modified = {2006-07-18 14:23:07 -0400},
467 >        Date-Modified = {2006-08-19 19:34:36 -0400},
468          Doi = {10.1063/1.1652434},
469          Journal = {J. Chem. Phys.},
470 <        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Rick_TIP5P-Ew_04.pdf},
470 >        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Rick_TIP5P-E_04.pdf},
471          Number = {13},
472          Pages = {6085-6093},
473          Title = {A reoptimization of the five-site water potential (\uppercase{TIP5P}) for use with \uppercase{E}wald sums},
# Line 1050 | Line 1240
1240          Title = {On the relation between self-diffusion and viscosity of liquids},
1241          Volume = 79,
1242          Year = 1983}
1053 –
1054 – @article{Zwanzig88,
1055 –        Author = {R. Zwanzig},
1056 –        Journal = {Proc. Natl. Acad. Sci. USA},
1057 –        Pages = 2029,
1058 –        Title = {Diffusion in rough potential},
1059 –        Volume = 85,
1060 –        Year = 1988}
1243  
1244   @article{Stillinger95,
1245          Author = {F.~H. Stillinger},
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1276          Volume = 106,
1277          Year = 1997}
1278  
1097 – @article{Spath96,
1098 –        Author = {B.~W. Spath and W.~H. Miller},
1099 –        Journal = jcp,
1100 –        Pages = 95,
1101 –        Title = {SEMICLASSICAL CALCULATION OF CUMULATIVE REACTION PROBABILITIES},
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1103 –        Year = 1996}
1104 –
1279   @book{Warshel91,
1280          Address = {New York},
1281          Author = {Arieh Warshel},
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1327          Title = {Mixed semiclassical-classical approaches to the dynamics of complex molecular systems},
1328          Year = 1997}
1329  
1156 – @article{Keshavamurthy94,
1157 –        Author = {S. Keshavamurthy and W.~H. Miller},
1158 –        Journal = cpl,
1159 –        Pages = 189,
1160 –        Title = {ivr},
1161 –        Volume = 218,
1162 –        Year = 1994}
1163 –
1164 – @article{Billing75,
1165 –        Author = {G.~D. Billing},
1166 –        Journal = cpl,
1167 –        Pages = 391,
1168 –        Title = {ehrenfest},
1169 –        Volume = 30,
1170 –        Year = 1975}
1171 –
1330   @article{Chang90,
1331          Author = {Y.-T. Chang and W.~H. Miller},
1332          Journal = jpc,
# Line 1249 | Line 1407
1407          Title = {A perfect quantum error correcting code: 5 bit code correcting a general 1 qubit error to encode 1 qubit of information},
1408          Volume = 98,
1409          Year = 1996}
1252 –
1253 – @article{Shor95,
1254 –        Author = {P.~W. Shor},
1255 –        Journal = {Phys. Rev. A},
1256 –        Pages = {2493-2496},
1257 –        Title = {SCHEME FOR REDUCING DECOHERENCE IN QUANTUM COMPUTER MEMORY},
1258 –        Volume = 52,
1259 –        Year = 1995}
1410  
1411   @article{Calderbank96,
1412          Author = {A.~R. Calderbank and P.~W. Shor},
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1697          Volume = 3,
1698          Year = 1992}
1699  
1550 – @book{Mazur97,
1551 –        Address = {New Jersey},
1552 –        Author = {Eric Mazur},
1553 –        Date-Modified = {2006-07-18 15:07:06 -0400},
1554 –        Publisher = {Prentice Hall},
1555 –        Title = {Peer Instruction: $\mbox{A}$ User's Manual},
1556 –        Year = 1997}
1557 –
1700   @article{Wigner55,
1701          Author = {E.~P. Wigner},
1702          Journal = {Annals of Mathematics},
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1939          Title = {Electronic properties of single-phased metastable Ag-Cu alloys},
1940          Volume = 46,
1941          Year = 1992}
1800 –
1801 – @article{Wendt78,
1802 –        Author = {H. Wendt and F.~F. Abraham},
1803 –        Journal = prl,
1804 –        Pages = 1244,
1805 –        Volume = 41,
1806 –        Year = 1978}
1942  
1943   @article{Lewis91,
1944          Author = {L.~J. Lewis},
# Line 1845 | Line 1980
1980          Volume = 24,
1981          Year = 1981}
1982  
1848 – @unpublished{Truhlar00,
1849 –        Author = {D.~G. Truhlar and A. Kohen},
1850 –        Date-Modified = {2006-02-15 16:35:52 -0500},
1851 –        Note = {private correspondence},
1852 –        Year = {2000}}
1853 –
1983   @article{Truhlar78,
1984          Author = {Donald G. Truhlar},
1985          Journal = {J. Chem. Ed.},
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2058          Volume = 65,
2059          Year = 1993}
2060  
2061 < @article{Dwyer1977,
1933 <        Author = {D.~J. Dwyer and G.~W. Simmons and R.~P. Wei},
1934 <        Journal = {Surf. Sci.},
1935 <        Pages = 617,
1936 <        Volume = 64,
1937 <        Year = 1977}
1938 <
1939 < @article{Macritche78,
1940 <        Author = {F. MacRitche},
1941 <        Date-Modified = {2006-02-15 10:27:37 -0500},
1942 <        Journal = {Adv. Protein Chem.},
1943 <        Pages = 283,
1944 <        Volume = 32,
1945 <        Year = 1978}
1946 <
1947 < @article{Feder80,
1948 <        Author = {J. Feder},
1949 <        Date-Modified = {2006-02-15 10:17:21 -0500},
1950 <        Journal = {J. Theor. Biol.},
1951 <        Pages = 237,
1952 <        Volume = 87,
1953 <        Year = 1980}
1954 <
1955 < @article{Ramsden93,
1956 <        Author = {J.~J. Ramsden},
1957 <        Date-Modified = {2006-02-15 10:31:03 -0500},
1958 <        Journal = prl,
1959 <        Pages = 295,
1960 <        Volume = 71,
1961 <        Year = 1993}
1962 <
1963 < @article{Egelhoff89,
1964 <        Author = {W.~F. Egelhoff and I. Jacob},
1965 <        Date-Modified = {2006-02-15 10:16:54 -0500},
1966 <        Journal = prl,
1967 <        Pages = 921,
1968 <        Volume = 62,
1969 <        Year = 1989}
1970 <
1971 < @article{Viot92a,
2061 > @article{Viot92,
2062          Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot},
2063 <        Date-Modified = {2006-07-18 14:57:12 -0400},
2063 >        Date-Modified = {2006-08-24 10:33:17 -0400},
2064          Journal = jpc,
2065          Pages = {5212-5218},
2066          Title = {RANDOM SEQUENTIAL ADSORPTION OF ANISOTROPIC PARTICLES 1. \uppercase{J}AMMING LIMIT AND ASYMPTOTIC-BEHAVIOR},
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2076          Volume = 191,
2077          Year = 1992}
2078  
1989 – @article{Dobson1987,
1990 –        Author = {B.~W. Dobson},
1991 –        Journal = prb,
1992 –        Pages = 1068,
1993 –        Volume = 36,
1994 –        Year = 1987}
1995 –
2079   @article{Boyer95,
2080          Author = {D. Boyer and P. Viot and G. Tarjus and J. Talbot},
2081          Date-Modified = {2006-02-15 10:15:52 -0500},
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2112          Volume = 14,
2113          Year = 1998}
2114  
2032 – @article{Solomon86,
2033 –        Author = {H. Solomon and H. Weiner},
2034 –        Date-Modified = {2006-02-15 10:10:38 -0500},
2035 –        Journal = {Comm. Statistics A},
2036 –        Pages = {2571-2607},
2037 –        Title = {A REVIEW OF THE PACKING PROBLEM},
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2039 –        Year = 1986}
2040 –
2115   @article{Bonnier93,
2116          Author = {B. Bonnier and M. Hontebeyrie and C. Meyers},
2117          Date-Modified = {2006-02-15 10:08:35 -0500},
# Line 2055 | Line 2129
2129          Title = {Understanding Molecular Simulation: \uppercase{F}rom Algorithms to Applications},
2130          Year = 1996}
2131  
2132 < @article{Dullweber1997,
2132 > @article{Dullweber97,
2133          Author = {A. Dullweber and B. Leimkuhler and R. McLachlan},
2134 +        Date-Modified = {2006-08-24 09:55:06 -0400},
2135          Journal = jcp,
2136          Number = 15,
2137          Pages = {5840-5851},
# Line 2084 | Line 2159
2159  
2160   @article{Liu96b,
2161          Author = {Y. Liu and T. Ichiye},
2162 <        Date-Modified = {2006-07-18 15:06:06 -0400},
2162 >        Date-Modified = {2006-08-22 14:42:05 -0400},
2163          Journal = jpc,
2164 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Ichiye_SSD_96.pdf},
2165          Pages = {2723-2730},
2166          Title = {Soft sticky dipole potential for liquid water: \uppercase{a} new model},
2167          Volume = 100,
2168          Year = 1996}
2169  
2170 < @article{Liu96a,
2170 > @article{Liu96,
2171          Author = {Y. Liu and T. Ichiye},
2172 <        Date-Modified = {2006-02-15 10:27:01 -0500},
2172 >        Date-Modified = {2006-08-22 14:39:40 -0400},
2173          Journal = {Chem. Phys. Lett.},
2174          Pages = {334-340},
2175          Title = {The static dielectric constant of the soft sticky dipole model of liquid water: $\mbox{Monte Carlo}$ simulation},
# Line 2102 | Line 2178
2178  
2179   @article{Chandra99,
2180          Author = {A. Chandra and T. Ichiye},
2181 <        Date-Modified = {2006-07-18 15:01:30 -0400},
2181 >        Date-Modified = {2006-08-22 14:41:50 -0400},
2182          Journal = {J. Chem. Phys.},
2183 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Chandra_SSDdynamics_99.pdf},
2184          Number = 6,
2185          Pages = {2701-2709},
2186          Title = {Dynamical properties of the soft sticky dipole model of water: \uppercase{M}olecular dynamics simulation},
# Line 2830 | Line 2907
2907  
2908   @article{Vlot99,
2909          Author = {M.~J. Vlot and J. Huinink and J.~P. van~der~Eerden},
2910 <        Date-Modified = {2006-07-18 15:18:07 -0400},
2910 >        Date-Modified = {2006-08-26 23:57:49 -0400},
2911          Journal = jcp,
2912          Number = 1,
2913          Pages = {55-61},
2914 <        Title = {Free energy calculations on systems of rigid molecules: $\mbox{A}$n application to the $\mbox{TIP4P}$ model of $\mbox{H}_2$\mbox{O}$},
2914 >        Title = {Free energy calculations on systems of rigid molecules: \uppercase{A}n application to the \uppercase{TIP4P} model of \uppercase{H}$_2$\uppercase{O}},
2915          Volume = 110,
2916          Year = 1999}
2917  
# Line 2868 | Line 2945
2945          Volume = 189,
2946          Year = 1992}
2947  
2871 – @article{Mezei92,
2872 –        Author = {M. Mezei},
2873 –        Journal = {J. Comput. Chem.},
2874 –        Pages = 651,
2875 –        Title = {Don't Remember},
2876 –        Volume = 13,
2877 –        Year = 1992}
2878 –
2879 – @article{Widom63,
2880 –        Author = {B. Widom},
2881 –        Journal = jcp,
2882 –        Pages = 2808,
2883 –        Title = {Particle insertion},
2884 –        Volume = 39,
2885 –        Year = 1963}
2886 –
2948   @article{Clancy94,
2949          Author = {L.~A. B\'{a}ez and P. Clancy},
2950          Journal = jcp,

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