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Revision 2976 by chrisfen, Tue Aug 22 18:04:10 2006 UTC vs.
Revision 2977 by chrisfen, Sun Aug 27 15:24:39 2006 UTC

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2   %% http://bibdesk.sourceforge.net/
3  
4  
5 < %% Created for Chris Fennell at 2006-08-19 19:34:39 -0400
5 > %% Created for Chris Fennell at 2006-08-26 23:57:49 -0400
6  
7  
8   %% Saved with string encoding Western (ASCII)
# Line 45 | Line 45
45   @string{rmp = {Rev. Mod. Phys.}}
46  
47  
48 + @article{Freddolino06,
49 +        Author = {P.~L. Freddolino and A.~S. Arkhipov and S.~B. Larson and A. McPherson and K. Schulten},
50 +        Date-Added = {2006-08-24 16:11:43 -0400},
51 +        Date-Modified = {2006-08-24 16:14:03 -0400},
52 +        Doi = {10.1016/j.str.2005.11.014},
53 +        Journal = {Structure},
54 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Freddolino_VirusSimulation_06.pdf},
55 +        Pages = {437-449},
56 +        Title = {Molecular Dynamics Simulations of the Complete Satellite Tobacco Mosaic Virus},
57 +        Volume = {14},
58 +        Year = {2006}}
59 +
60 + @article{Gillen72,
61 +        Author = {K.~T. Gillen and D.~C. Douglas and M.~J.~R. Hoch},
62 +        Date-Added = {2006-08-24 10:40:48 -0400},
63 +        Date-Modified = {2006-08-24 10:41:10 -0400},
64 +        Journal = jcp,
65 +        Pages = {5117-5119},
66 +        Title = {Self-Diffusion in Liquid Water to $-31^\circ$~\uppercase{C}},
67 +        Volume = 57,
68 +        Year = 1972}
69 +
70 + @book{Rothschild84,
71 +        Address = {New York},
72 +        Author = {W.~G. Rothschild},
73 +        Date-Added = {2006-08-24 10:35:25 -0400},
74 +        Date-Modified = {2006-08-24 10:35:25 -0400},
75 +        Publisher = {John Wiley \& Sons, Inc.},
76 +        Title = {Dynamics of Molecular Liquids},
77 +        Year = 1984}
78 +
79 + @article{Krynicki66,
80 +        Author = {K. Krynicki},
81 +        Date-Added = {2006-08-24 10:34:29 -0400},
82 +        Date-Modified = {2006-08-24 10:35:05 -0400},
83 +        Journal = {Physica},
84 +        Pages = {167-178},
85 +        Title = {PROTON SPIN-LATTICE RELAXATION IN PURE WATER BETWEEN 0$^\circ$\uppercase{C} AND 100$^\circ$\uppercase{C}},
86 +        Volume = 32,
87 +        Year = 1966}
88 +
89 + @book{Eisenberg69,
90 +        Address = {Oxford},
91 +        Author = {D. Eisenberg and W. Kauzmann},
92 +        Date-Added = {2006-08-24 10:33:59 -0400},
93 +        Date-Modified = {2006-08-24 10:33:59 -0400},
94 +        Publisher = {Oxford University Press},
95 +        Title = {The Structure and Properties of Water},
96 +        Year = 1969}
97 +
98 + @article{Mills73,
99 +        Author = {R. Mills},
100 +        Date-Added = {2006-08-24 10:24:33 -0400},
101 +        Date-Modified = {2006-08-24 10:25:04 -0400},
102 +        Journal = jpc,
103 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Mills_Diffuse_73.pdf},
104 +        Number = 5,
105 +        Pages = {685-688},
106 +        Title = {Self-Diffusion in Normal and Heavy Water in the Range 1-45$^\circ$},
107 +        Volume = 77,
108 +        Year = 1973}
109 +
110 + @article{Barriol64,
111 +        Author = {J. Barriol and A. Weisbecker},
112 +        Date-Added = {2006-08-24 10:23:25 -0400},
113 +        Date-Modified = {2006-08-24 10:23:39 -0400},
114 +        Journal = {Compt. Rend. Acad. Sc. Paris},
115 +        Pages = {4643-4645},
116 +        Title = {Contribution \`{a} l'\'{e}tude di\'{e}lectrique des liquides associ\'{e}s par liaisons hydrog\'{e}ne},
117 +        Volume = 259,
118 +        Year = 1964}
119 +
120 + @article{Badyal00,
121 +        Author = {Y.~S. Badyal and M.~-L. Saboungi and D.~L. Price and S.~D. Shastri and D.~R. Haeffner and A.~K. Soper},
122 +        Date-Added = {2006-08-24 10:21:10 -0400},
123 +        Date-Modified = {2006-08-24 10:22:49 -0400},
124 +        Journal = jcp,
125 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Badyal_ElectronDistributionInH2O_00.pdf},
126 +        Number = 21,
127 +        Pages = {9206-9208},
128 +        Title = {Electron distribution in water},
129 +        Volume = 112,
130 +        Year = 2000}
131 +
132 + @article{Gubskaya02,
133 +        Author = {A.~V. Gubskaya and P.~G. Kusalik},
134 +        Date-Added = {2006-08-24 10:17:41 -0400},
135 +        Date-Modified = {2006-08-24 10:18:37 -0400},
136 +        Journal = jcp,
137 +        Number = 11,
138 +        Pages = {5290-5302},
139 +        Title = {The total molecular dipole moment for liquid water},
140 +        Volume = 117,
141 +        Year = 2002}
142 +
143 + @article{Sprik91,
144 +        Author = {M. Sprik},
145 +        Date-Added = {2006-08-24 10:10:41 -0400},
146 +        Date-Modified = {2006-08-24 10:17:06 -0400},
147 +        Journal = jcp,
148 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Sprik_HBondingAndStaticDielectricInH2O_91.pdf},
149 +        Number = 9,
150 +        Pages = {6762-6769},
151 +        Title = {Hydrogen bonding and the static dielectric constant in liquid water},
152 +        Volume = 95,
153 +        Year = 1991}
154 +
155 + @article{Nezbeda02,
156 +        Author = {M. Lisal and J. Kolafa and I. Nezbeda},
157 +        Date-Added = {2006-08-24 10:08:19 -0400},
158 +        Date-Modified = {2006-08-24 10:08:37 -0400},
159 +        Journal = jcp,
160 +        Number = 19,
161 +        Pages = {8892-8897},
162 +        Title = {An examination of the five-site potential (\uppercase{TIP5P}) for water},
163 +        Volume = 117,
164 +        Year = 2002}
165 +
166 + @article{Rahman72,
167 +        Author = {A. Rahman and F.~H. Stillinger},
168 +        Date-Added = {2006-08-24 10:03:48 -0400},
169 +        Date-Modified = {2006-08-24 10:09:05 -0400},
170 +        Journal = jcp,
171 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Ice_Simulations/Rahman_ProtonDistributionInIce_72.pdf},
172 +        Number = 9,
173 +        Pages = {4009-4017},
174 +        Title = {Proton Distribution in Ice and the \uppercase{K}irkwood Correlation Factor},
175 +        Volume = 57,
176 +        Year = 1972}
177 +
178 + @article{Bernal33,
179 +        Author = {J.~D. Bernal and R.~H. Fowler},
180 +        Date-Added = {2006-08-24 09:58:00 -0400},
181 +        Date-Modified = {2006-08-24 09:59:43 -0400},
182 +        Journal = {J. Chem. Phys.},
183 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Bernal_TheoryOfWater_33.pdf},
184 +        Number = {8},
185 +        Pages = {515-548},
186 +        Title = {A Theory of Water and Ionic Solution with Particular Reference to Hydrogen and Hydroxyl Ions},
187 +        Volume = {1},
188 +        Year = {1933}}
189 +
190 + @article{Hoover86,
191 +        Author = {W.~G. Hoover},
192 +        Date-Added = {2006-08-24 09:53:21 -0400},
193 +        Date-Modified = {2006-08-24 09:53:21 -0400},
194 +        Journal = pra,
195 +        Number = 3,
196 +        Pages = {2499-2500},
197 +        Title = {Constant-pressure equations of motion},
198 +        Volume = 34,
199 +        Year = 1986}
200 +
201 + @article{Fennell06,
202 +        Author = {C.~J. Fennell and J.~D. Gezelter},
203 +        Date-Added = {2006-08-24 09:49:57 -0400},
204 +        Date-Modified = {2006-08-24 09:49:57 -0400},
205 +        Doi = {10.1063/1.2206581},
206 +        Journal = {J. Chem. Phys.},
207 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Fennell_PairwiseSummationMethods_06.pdf},
208 +        Number = {23},
209 +        Pages = {234104(12)},
210 +        Rating = {5},
211 +        Read = {Yes},
212 +        Title = {Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics},
213 +        Volume = {124},
214 +        Year = {2006}}
215 +
216 + @article{Evans77b,
217 +        Author = {D.~J. Evans and S. Murad},
218 +        Date-Added = {2006-08-22 14:23:16 -0400},
219 +        Date-Modified = {2006-08-22 14:23:16 -0400},
220 +        Journal = {Mol. Phys.},
221 +        Pages = {327-331},
222 +        Title = {Singularity-free algorithm for molecular dynamics simulation of rigid polyatomics},
223 +        Volume = 34,
224 +        Year = 1977}
225 +
226   @article{Aguado03,
227          Author = {A. Aguado and P.~A. Madden},
228          Date-Added = {2006-08-16 10:42:15 -0400},
# Line 1051 | Line 1229
1229          Volume = 79,
1230          Year = 1983}
1231  
1054 – @article{Zwanzig88,
1055 –        Author = {R. Zwanzig},
1056 –        Journal = {Proc. Natl. Acad. Sci. USA},
1057 –        Pages = 2029,
1058 –        Title = {Diffusion in rough potential},
1059 –        Volume = 85,
1060 –        Year = 1988}
1061 –
1232   @article{Stillinger95,
1233          Author = {F.~H. Stillinger},
1234          Journal = {Science},
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1263          Title = {Semiclassical initial value representation for electronically nonadiabatic molecular dynamics},
1264          Volume = 106,
1265          Year = 1997}
1096 –
1097 – @article{Spath96,
1098 –        Author = {B.~W. Spath and W.~H. Miller},
1099 –        Journal = jcp,
1100 –        Pages = 95,
1101 –        Title = {SEMICLASSICAL CALCULATION OF CUMULATIVE REACTION PROBABILITIES},
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1103 –        Year = 1996}
1266  
1267   @book{Warshel91,
1268          Address = {New York},
# Line 1153 | Line 1315
1315          Title = {Mixed semiclassical-classical approaches to the dynamics of complex molecular systems},
1316          Year = 1997}
1317  
1156 – @article{Keshavamurthy94,
1157 –        Author = {S. Keshavamurthy and W.~H. Miller},
1158 –        Journal = cpl,
1159 –        Pages = 189,
1160 –        Title = {ivr},
1161 –        Volume = 218,
1162 –        Year = 1994}
1163 –
1164 – @article{Billing75,
1165 –        Author = {G.~D. Billing},
1166 –        Journal = cpl,
1167 –        Pages = 391,
1168 –        Title = {ehrenfest},
1169 –        Volume = 30,
1170 –        Year = 1975}
1171 –
1318   @article{Chang90,
1319          Author = {Y.-T. Chang and W.~H. Miller},
1320          Journal = jpc,
# Line 1250 | Line 1396
1396          Volume = 98,
1397          Year = 1996}
1398  
1253 – @article{Shor95,
1254 –        Author = {P.~W. Shor},
1255 –        Journal = {Phys. Rev. A},
1256 –        Pages = {2493-2496},
1257 –        Title = {SCHEME FOR REDUCING DECOHERENCE IN QUANTUM COMPUTER MEMORY},
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1259 –        Year = 1995}
1260 –
1399   @article{Calderbank96,
1400          Author = {A.~R. Calderbank and P.~W. Shor},
1401          Journal = {Phys. Rev. A},
# Line 1547 | Line 1685
1685          Volume = 3,
1686          Year = 1992}
1687  
1550 – @book{Mazur97,
1551 –        Address = {New Jersey},
1552 –        Author = {Eric Mazur},
1553 –        Date-Modified = {2006-07-18 15:07:06 -0400},
1554 –        Publisher = {Prentice Hall},
1555 –        Title = {Peer Instruction: $\mbox{A}$ User's Manual},
1556 –        Year = 1997}
1557 –
1688   @article{Wigner55,
1689          Author = {E.~P. Wigner},
1690          Journal = {Annals of Mathematics},
# Line 1797 | Line 1927
1927          Title = {Electronic properties of single-phased metastable Ag-Cu alloys},
1928          Volume = 46,
1929          Year = 1992}
1800 –
1801 – @article{Wendt78,
1802 –        Author = {H. Wendt and F.~F. Abraham},
1803 –        Journal = prl,
1804 –        Pages = 1244,
1805 –        Volume = 41,
1806 –        Year = 1978}
1930  
1931   @article{Lewis91,
1932          Author = {L.~J. Lewis},
# Line 1844 | Line 1967
1967          Title = {Dispersive diffusion transport and noise, time-dependent diffusion coefficient, generalized Einstein-Nernst relation, and dispersive diffusion-controlled unimolecular and bimolecular reactions},
1968          Volume = 24,
1969          Year = 1981}
1847 –
1848 – @unpublished{Truhlar00,
1849 –        Author = {D.~G. Truhlar and A. Kohen},
1850 –        Date-Modified = {2006-02-15 16:35:52 -0500},
1851 –        Note = {private correspondence},
1852 –        Year = {2000}}
1970  
1971   @article{Truhlar78,
1972          Author = {Donald G. Truhlar},
# Line 1929 | Line 2046
2046          Volume = 65,
2047          Year = 1993}
2048  
2049 < @article{Dwyer1977,
1933 <        Author = {D.~J. Dwyer and G.~W. Simmons and R.~P. Wei},
1934 <        Journal = {Surf. Sci.},
1935 <        Pages = 617,
1936 <        Volume = 64,
1937 <        Year = 1977}
1938 <
1939 < @article{Macritche78,
1940 <        Author = {F. MacRitche},
1941 <        Date-Modified = {2006-02-15 10:27:37 -0500},
1942 <        Journal = {Adv. Protein Chem.},
1943 <        Pages = 283,
1944 <        Volume = 32,
1945 <        Year = 1978}
1946 <
1947 < @article{Feder80,
1948 <        Author = {J. Feder},
1949 <        Date-Modified = {2006-02-15 10:17:21 -0500},
1950 <        Journal = {J. Theor. Biol.},
1951 <        Pages = 237,
1952 <        Volume = 87,
1953 <        Year = 1980}
1954 <
1955 < @article{Ramsden93,
1956 <        Author = {J.~J. Ramsden},
1957 <        Date-Modified = {2006-02-15 10:31:03 -0500},
1958 <        Journal = prl,
1959 <        Pages = 295,
1960 <        Volume = 71,
1961 <        Year = 1993}
1962 <
1963 < @article{Egelhoff89,
1964 <        Author = {W.~F. Egelhoff and I. Jacob},
1965 <        Date-Modified = {2006-02-15 10:16:54 -0500},
1966 <        Journal = prl,
1967 <        Pages = 921,
1968 <        Volume = 62,
1969 <        Year = 1989}
1970 <
1971 < @article{Viot92a,
2049 > @article{Viot92,
2050          Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot},
2051 <        Date-Modified = {2006-07-18 14:57:12 -0400},
2051 >        Date-Modified = {2006-08-24 10:33:17 -0400},
2052          Journal = jpc,
2053          Pages = {5212-5218},
2054          Title = {RANDOM SEQUENTIAL ADSORPTION OF ANISOTROPIC PARTICLES 1. \uppercase{J}AMMING LIMIT AND ASYMPTOTIC-BEHAVIOR},
# Line 1986 | Line 2064
2064          Volume = 191,
2065          Year = 1992}
2066  
1989 – @article{Dobson1987,
1990 –        Author = {B.~W. Dobson},
1991 –        Journal = prb,
1992 –        Pages = 1068,
1993 –        Volume = 36,
1994 –        Year = 1987}
1995 –
2067   @article{Boyer95,
2068          Author = {D. Boyer and P. Viot and G. Tarjus and J. Talbot},
2069          Date-Modified = {2006-02-15 10:15:52 -0500},
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2100          Volume = 14,
2101          Year = 1998}
2102  
2032 – @article{Solomon86,
2033 –        Author = {H. Solomon and H. Weiner},
2034 –        Date-Modified = {2006-02-15 10:10:38 -0500},
2035 –        Journal = {Comm. Statistics A},
2036 –        Pages = {2571-2607},
2037 –        Title = {A REVIEW OF THE PACKING PROBLEM},
2038 –        Volume = 15,
2039 –        Year = 1986}
2040 –
2103   @article{Bonnier93,
2104          Author = {B. Bonnier and M. Hontebeyrie and C. Meyers},
2105          Date-Modified = {2006-02-15 10:08:35 -0500},
# Line 2055 | Line 2117
2117          Title = {Understanding Molecular Simulation: \uppercase{F}rom Algorithms to Applications},
2118          Year = 1996}
2119  
2120 < @article{Dullweber1997,
2120 > @article{Dullweber97,
2121          Author = {A. Dullweber and B. Leimkuhler and R. McLachlan},
2122 +        Date-Modified = {2006-08-24 09:55:06 -0400},
2123          Journal = jcp,
2124          Number = 15,
2125          Pages = {5840-5851},
# Line 2084 | Line 2147
2147  
2148   @article{Liu96b,
2149          Author = {Y. Liu and T. Ichiye},
2150 <        Date-Modified = {2006-07-18 15:06:06 -0400},
2150 >        Date-Modified = {2006-08-22 14:42:05 -0400},
2151          Journal = jpc,
2152 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Ichiye_SSD_96.pdf},
2153          Pages = {2723-2730},
2154          Title = {Soft sticky dipole potential for liquid water: \uppercase{a} new model},
2155          Volume = 100,
2156          Year = 1996}
2157  
2158 < @article{Liu96a,
2158 > @article{Liu96,
2159          Author = {Y. Liu and T. Ichiye},
2160 <        Date-Modified = {2006-02-15 10:27:01 -0500},
2160 >        Date-Modified = {2006-08-22 14:39:40 -0400},
2161          Journal = {Chem. Phys. Lett.},
2162          Pages = {334-340},
2163          Title = {The static dielectric constant of the soft sticky dipole model of liquid water: $\mbox{Monte Carlo}$ simulation},
# Line 2102 | Line 2166
2166  
2167   @article{Chandra99,
2168          Author = {A. Chandra and T. Ichiye},
2169 <        Date-Modified = {2006-07-18 15:01:30 -0400},
2169 >        Date-Modified = {2006-08-22 14:41:50 -0400},
2170          Journal = {J. Chem. Phys.},
2171 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Chandra_SSDdynamics_99.pdf},
2172          Number = 6,
2173          Pages = {2701-2709},
2174          Title = {Dynamical properties of the soft sticky dipole model of water: \uppercase{M}olecular dynamics simulation},
# Line 2830 | Line 2895
2895  
2896   @article{Vlot99,
2897          Author = {M.~J. Vlot and J. Huinink and J.~P. van~der~Eerden},
2898 <        Date-Modified = {2006-07-18 15:18:07 -0400},
2898 >        Date-Modified = {2006-08-26 23:57:49 -0400},
2899          Journal = jcp,
2900          Number = 1,
2901          Pages = {55-61},
2902 <        Title = {Free energy calculations on systems of rigid molecules: $\mbox{A}$n application to the $\mbox{TIP4P}$ model of $\mbox{H}_2$\mbox{O}$},
2902 >        Title = {Free energy calculations on systems of rigid molecules: \uppercase{A}n application to the \uppercase{TIP4P} model of \uppercase{H}$_2$\uppercase{O}},
2903          Volume = 110,
2904          Year = 1999}
2905  
# Line 2868 | Line 2933
2933          Volume = 189,
2934          Year = 1992}
2935  
2871 – @article{Mezei92,
2872 –        Author = {M. Mezei},
2873 –        Journal = {J. Comput. Chem.},
2874 –        Pages = 651,
2875 –        Title = {Don't Remember},
2876 –        Volume = 13,
2877 –        Year = 1992}
2878 –
2879 – @article{Widom63,
2880 –        Author = {B. Widom},
2881 –        Journal = jcp,
2882 –        Pages = 2808,
2883 –        Title = {Particle insertion},
2884 –        Volume = 39,
2885 –        Year = 1963}
2886 –
2936   @article{Clancy94,
2937          Author = {L.~A. B\'{a}ez and P. Clancy},
2938          Journal = jcp,

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