[ViewVC] Diff of: group/trunk/electrostaticMethodsPaper/electrostaticMethods.bib

Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents):
Revision 2629 by chrisfen, Thu Mar 16 03:48:32 2006 UTC vs.
Revision 2637 by chrisfen, Sun Mar 19 02:48:19 2006 UTC

+%% http://bibdesk.sourceforge.net/
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+%% Created for Chris Fennell at 2006-03-15 21:43:19 -0500
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+%% Created for Chris Fennell at 2006-03-18 21:00:37 -0500
+%% Saved with string encoding Western (ASCII)
+@STRING{prl = "Phys. Rev. Lett."}
+@STRING{rmp = "Rev. Mod. Phys."}
-+
-+
-+
+@article{Luty96,
-+
+        Author = {B.~A. Luty and W.~F. {van~Gunsteren}},
-+
+        Date-Added = {2006-03-18 20:59:19 -0500},
-+
+        Date-Modified = {2006-03-18 21:00:33 -0500},
-+
+        Journal = {J. Phys. Chem.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Luty_PPPMElectrostaticCalculations_96.pdf},
-+
+        Number = {7},
-+
+        Pages = {2581-2587},
-+
+        Title = {Calculating Electrostatic Interactions Using the Particle-Particle Particle-Mesh Method with Nonperiodic Long-Range Interactions},
-+
+        Volume = {100},
-+
+        Year = {1996}}
-+
-+
+@article{Rhee89,
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+        Author = {Y.-J. Rhee and J.~W. Halley and J. Hautman and A. Rahman},
-+
+        Date-Added = {2006-03-18 20:48:07 -0500},
-+
+        Date-Modified = {2006-03-18 20:51:09 -0500},
-+
+        Journal = {Phys. Rev. B},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Rhee_finiteDimensionEwald_88.pdf},
-+
+        Number = {1},
-+
+        Pages = {36-42},
-+
+        Title = {Ewald methods in molecular dynamics for systems of finite extent in one of three dimensions},
-+
+        Volume = {40},
-+
+        Year = {1989}}
-+
-+
+@article{Hunenberger99a,
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+        Author = {P.~H. H\"{u}nenberger and J.~A. McCammon},
-+
+        Date-Added = {2006-03-18 20:14:24 -0500},
-+
+        Date-Modified = {2006-03-18 20:16:01 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Hunenberger_IonSolutionEwaldArtifacts_99.pdf},
-+
+        Number = {4},
-+
+        Pages = {1856-1872},
-+
+        Title = {Ewald artifacts in computer simulations of ionic solvation and ion -- ion interaction: A continuum electrostatics study},
-+
+        Volume = {110},
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+        Year = {1999}}
-+
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+@article{Roberts95,
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+        Author = {J.~E. Roberts and J. Schnitker},
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+        Date-Added = {2006-03-18 20:12:23 -0500},
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+        Date-Modified = {2006-03-18 20:13:36 -0500},
-+
+        Journal = {J. Phys. Chem.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Roberts_BoundryConditionsIonWater_95.pdf},
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+        Pages = {1322-1331},
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+        Title = {Boundary Conditions in Sumulations of Aqueous Ionic Solutions: A Systematic Study},
-+
+        Volume = {99},
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+        Year = {1995}}
-+
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+@article{Roberts94,
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+        Author = {J.~E. Roberts and J. Schnitker},
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+        Date-Added = {2006-03-18 20:10:37 -0500},
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+        Date-Modified = {2006-03-18 20:12:19 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Roberts_IonSolventEwaldProbs_94.pdf},
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+        Number = {6},
-+
+        Pages = {5024-5031},
-+
+        Title = {How the unit cell surface charge distriubution affects the energetics of ion-solvent interactions in simulations},
-+
+        Volume = {101},
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+        Year = {1994}}
-+
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+@article{Yeh99,
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+        Author = {I.-C. Yeh and M.~L. Berkowitz},
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+        Date-Added = {2006-03-18 19:24:27 -0500},
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+        Date-Modified = {2006-03-18 19:26:08 -0500},
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+        Journal = {J. Chem. Phys.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Yeh_SlabCorrectionEwald_99.pdf},
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+        Number = {7},
-+
+        Pages = {3155-3162},
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+        Title = {Ewald summation for systems with slab geometry},
-+
+        Volume = {111},
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+        Year = {1999}}
-+
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+@article{Parry76,
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+        Author = {D.~E. Parry},
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+        Date-Added = {2006-03-18 19:11:01 -0500},
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+        Date-Modified = {2006-03-18 19:14:01 -0500},
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+        Journal = {Surf. Sci.},
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+        Pages = {195},
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+        Title = {Errata: The electrostatic potential in the surface region of an ionic crystal},
-+
+        Volume = {54},
-+
+        Year = {1976}}
-+
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+@article{Parry75,
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+        Author = {D.~E. Parry},
-+
+        Date-Added = {2006-03-18 19:08:40 -0500},
-+
+        Date-Modified = {2006-03-18 19:16:14 -0500},
-+
+        Journal = {Surf. Sci.},
-+
+        Pages = {433-440},
-+
+        Title = {The electrostatic potential in the surface region of an ionic crystal},
-+
+        Volume = {49},
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+        Year = {1975}}
-+
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+@article{deLeeuw79,
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+        Author = {S.~W. {de Leeuw} and J.~W. Perram},
-+
+        Date-Added = {2006-03-18 19:05:18 -0500},
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+        Date-Modified = {2006-03-18 19:07:48 -0500},
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+        Journal = {Mol. Phys.},
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+        Pages = {1313-1327},
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+        Title = {Electrostatic Lattice Sums for Semi-Infinite Lattices},
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+        Volume = {37},
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+        Year = {1979}}
-+
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+@article{Heyes77,
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+        Author = {D.~M. Heyes and M. Barber and J.~H.~R. Clarke},
-+
+        Date-Added = {2006-03-18 19:02:16 -0500},
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+        Date-Modified = {2006-03-18 19:04:48 -0500},
-+
+        Journal = {J. Chem. Soc., Faraday Trans. II},
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+        Number = {7},
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+        Pages = {1485-1496},
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+        Title = {Molecular dynamics computer simulation of surface properties of crystalline potassium chloride},
-+
+        Volume = {73},
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+        Year = {1977}}
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+@article{Spohr97,
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+        Author = {E. Spohr},
-+
+        Date-Added = {2006-03-18 18:51:02 -0500},
-+
+        Date-Modified = {2006-03-18 18:52:21 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Spohr_2DElectrostatics_97.pdf},
-+
+        Number = {16},
-+
+        Pages = {6342-6348},
-+
+        Title = {Effect of electrostatic boundary conditions and system size on the interfacial properties of water and aqueous solutions},
-+
+        Volume = {107},
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+        Year = {1997}}
-+
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+@article{York94,
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+        Author = {D. York and W. Yang},
-+
+        Date-Added = {2006-03-18 11:52:58 -0500},
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+        Date-Modified = {2006-03-18 11:54:19 -0500},
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+        Journal = {J. Chem. Phys.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/York_FFPoissonEwald_94.pdf},
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+        Number = {4},
-+
+        Pages = {3298-3300},
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+        Title = {The fast Fourier Poisson method for calculating Ewald sums},
-+
+        Volume = {101},
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+        Year = {1994}}
-+
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+@article{Shimada93,
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+        Author = {J. Shimada and H. Kaneko and T. Takada},
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+        Date-Added = {2006-03-18 11:10:38 -0500},
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+        Date-Modified = {2006-03-18 11:12:10 -0500},
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+        Journal = {J. Comp. Chem.},
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+        Pages = {867-78},
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+        Title = {Efficient calculations of Coulombic interactions in biomolecular simulations with periodic boundary conditions},
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+        Volume = {14},
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+        Year = {1993}}
-+
+@article{Luty94,
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+        Author = {B.~A. Luty and M.~E. Davis and I.~G. Tironi and W.~F. {van~Gunsteren}},
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+        Date-Added = {2006-03-18 10:37:17 -0500},
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+        Date-Modified = {2006-03-18 11:09:55 -0500},
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+        Journal = {Mol. Simul.},
-+
+        Pages = {11-20},
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+        Title = {A comparison of particle-particle particle-mesh and Ewald methods for calculating electrostatic interactions in periodic systems},
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+        Volume = {14},
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+        Year = {1994}}
-+
+@book{Hockney81,
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+        Address = {New York},
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+        Author = {R.~W. Hockney and J.~W. Eastwood},
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+        Date-Added = {2006-03-18 10:33:19 -0500},
-+
+        Date-Modified = {2006-03-18 10:35:04 -0500},
-+
+        Publisher = {McGraw-Hill},
-+
+        Title = {Computer Simulation Using Particles},
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+        Year = {1981}}
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+@article{Sagui99,
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+        Author = {C. Sagui and T.~A. Darden},
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+        Date-Added = {2006-03-17 18:27:01 -0500},
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+        Date-Modified = {2006-03-17 18:29:36 -0500},
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+        Journal = {Annu. Rev. Biophys. Biomol. Struct.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/toCite/Darden_electrostaticInBiomolecules_99.pdf},
-+
+        Pages = {155-179},
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+        Title = {Molecular Dynamics Simulations of Biomolecules: Long-Range Electrostatic Effects},
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+        Volume = {28},
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+        Year = {1999}}
-+
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+@article{Perram88,
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+        Author = {J.~W. Perram and H.~G. Petersen and S.~W. {de Leeuw}},
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+        Date-Added = {2006-03-17 13:42:04 -0500},
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+        Date-Modified = {2006-03-17 13:59:01 -0500},
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+        Journal = {Mol. Phys.},
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+        Pages = {875-893},
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+        Title = {An algorithm for the simulation of condensed matter that grows as the 3/2 power of the number of particles},
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+        Volume = {65},
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+        Year = {1988}}
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+@article{Woodcock71,
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+        Author = {L.~V. Woodcock and K. Singer},
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+        Date-Added = {2006-03-17 11:14:17 -0500},
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+        Date-Modified = {2006-03-17 11:16:52 -0500},
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+        Journal = {Trans. Faraday Soc.},
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+        Pages = {12-30},
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+        Title = {Thermodynamic and Structural Properties of Liquid Ionic Salts Obtained by Monte Carlo Computation},
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+        Volume = {67},
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+        Year = {1971}}
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+@article{Smith81,
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+        Author = {E.~R. Smith},
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+        Date-Added = {2006-03-16 13:47:17 -0500},
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+        Date-Modified = {2006-03-16 13:48:34 -0500},
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+        Journal = {Proc. R. Soc. London Ser. A},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Smith_ElectrostaticEnergyInIonicCrystals_81.pdf},
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+        Pages = {475-505},
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+        Title = {Electrostatic Energy in Ionic Crystals},
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+        Volume = {375},
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+        Year = {1981}}
-+
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+@article{Weber00,
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+        Author = {W. Weber and P.~H. H\"{u}nenberger and J.~A. McCammon},
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+        Date-Added = {2006-03-16 09:49:22 -0500},
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+        Date-Modified = {2006-03-16 09:51:17 -0500},
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+        Doi = {10.1021/jp9937757},
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+        Journal = {J. Phys. Chem. B},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicityMD_00.pdf},
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+        Number = {15},
-+
+        Pages = {3668-3675},
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+        Title = {Molecular Dynamics Simulations of a Polyalanine Octapeptide under Ewald Boundary Conditions: Influence of Artificial Periodicity on Peptide Conformation},
-+
+        Volume = {104},
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+        Year = {2000}}
-+
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+@article{Hunenberger99b,
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+        Author = {P.~H. H\"{u}nenberger and J.~A. McCammon},
-+
+        Date-Added = {2006-03-16 09:45:10 -0500},
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+        Date-Modified = {2006-03-18 20:16:16 -0500},
-+
+        Journal = {Biophys. Chem.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicity_99.pdf},
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+        Pages = {69-88},
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+        Title = {Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics study},
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+        Volume = {78},
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+        Year = {1999}}
-+
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+@article{Petersen95,
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+        Author = {H.~G. Petersen},
-+
+        Date-Added = {2006-03-16 08:43:02 -0500},
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+        Date-Modified = {2006-03-16 08:44:32 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Petersen_AccuracyofPME_95.pdf},
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+        Month = {September},
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+        Number = {9},
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+        Pages = {3668-3679},
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+        Title = {Accuracy and efficiency of the particle mesh Ewald method},
-+
+        Volume = {103},
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+        Year = {1995}}
-+
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+@article{Luty95,
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+        Author = {B.~A. Luty and I.~G. Tironi and W.~F. {van~Gunsteren}},
-+
+        Date-Added = {2006-03-16 08:39:13 -0500},
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+        Date-Modified = {2006-03-16 08:41:15 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Luty_LatticeSumElectrostatics_95.pdf},
-+
+        Number = {8},
-+
+        Pages = {3014-3021},
-+
+        Title = {Lattice-sum methods for calculating electrostatic interactions in molecular simulations},
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+        Volume = {103},
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+        Year = {1995}}
-+
+@article{Barker73,
+        Author = {J.~A. Barker and R.~O. Watts },
+        Date-Added = {2006-03-15 18:58:17 -0500},
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+        Date-Modified = {2006-03-15 21:17:31 -0500},
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+        Date-Modified = {2006-03-18 11:36:56 -0500},
+        Journal = {Mol. Phys.},
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+        Pages = {789=792},
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+        Pages = {789-792},
+        Title = {Monte Carlo studies of the dielectric properties of water-like models},
+        Volume = {26},
+        Year = {1973}}
+@article{Ewald21,
+        Author = {P.~P. Ewald},
+        Date-Added = {2006-03-13 13:32:04 -0500},
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+        Date-Modified = {2006-03-13 13:32:55 -0500},
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+        Date-Modified = {2006-03-16 22:39:27 -0500},
+        Journal = {Ann. Physik},
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+        Pages = {253},
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+        Pages = {253-287},
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+        Title = {Die Berechnung optischer und elektrostatischer Gitterpotential},
+        Volume = {64},
+        Year = {1921}}
+@article{Darden93,
+        Author = {T. Darden and D. York and L. Pedersen},
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+        Date-Modified = {2006-02-15 10:09:52 -0500},
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+        Date-Modified = {2006-03-16 08:37:25 -0500},
+        Journal = {Journal of Chemical Physics},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Darden_ParticleMeshEwald_93.pdf},
+        Number = 12,
+        Pages = {10089-10092},
+        Title = {Particle mesh Ewald: An $N \log N$ method for Ewald sums in large systems},
+@article{Marrink03,
+        Author = {S.~J. Marrink and A.~E. Mark},
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+        Date-Modified = {2006-02-15 10:28:41 -0500},
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+        Journal = {J. Am. Chem. Soc.},
+        Pages = {15233-15242},
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+        Title = {Molecular Dynaimcs Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles},
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+        Title = {Molecular Dynamics Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles},
+        Volume = 125,
+        Year = 2003}

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Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents): Revision 2629 by chrisfen, Thu Mar 16 03:48:32 2006 UTC vs. Revision 2637 by chrisfen, Sun Mar 19 02:48:19 2006 UTC

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Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents):
Revision 2629 by chrisfen, Thu Mar 16 03:48:32 2006 UTC vs.
Revision 2637 by chrisfen, Sun Mar 19 02:48:19 2006 UTC