[ViewVC] Diff of: group/trunk/electrostaticMethodsPaper/electrostaticMethods.bib

Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents):
Revision 2595 by chrisfen, Mon Feb 20 12:32:54 2006 UTC vs.
Revision 2636 by chrisfen, Sat Mar 18 05:31:17 2006 UTC

+%% http://bibdesk.sourceforge.net/
-<
+%% Created for Chris Fennell at 2006-02-18 16:51:35 -0500
->
+%% Created for Chris Fennell at 2006-03-17 18:29:44 -0500
+%% Saved with string encoding Western (ASCII)
+@STRING{rmp = "Rev. Mod. Phys."}
-+
+@article{Sagui99,
-+
+        Author = {C. Sagui and T.~A. Darden},
-+
+        Date-Added = {2006-03-17 18:27:01 -0500},
-+
+        Date-Modified = {2006-03-17 18:29:36 -0500},
-+
+        Journal = {Annu. Rev. Biophys. Biomol. Struct.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/toCite/Darden_electrostaticInBiomolecules_99.pdf},
-+
+        Pages = {155-179},
-+
+        Title = {Molecular Dynamics Simulations of Biomolecules: Long-Range Electrostatic Effects},
-+
+        Volume = {28},
-+
+        Year = {1999}}
-+
-+
+@article{Perram88,
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+        Author = {J.~W. Perram and H.~G. Petersen and S.~W. {de Leeuw}},
-+
+        Date-Added = {2006-03-17 13:42:04 -0500},
-+
+        Date-Modified = {2006-03-17 13:59:01 -0500},
-+
+        Journal = {Mol. Phys.},
-+
+        Pages = {875-893},
-+
+        Title = {An algorithm for the simulation of condensed matter that grows as the 3/2 power of the number of particles},
-+
+        Volume = {65},
-+
+        Year = {1988}}
-+
-+
+@article{Woodcock71,
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+        Author = {L.~V. Woodcock and K. Singer},
-+
+        Date-Added = {2006-03-17 11:14:17 -0500},
-+
+        Date-Modified = {2006-03-17 11:16:52 -0500},
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+        Journal = {Trans. Faraday Soc.},
-+
+        Pages = {12-30},
-+
+        Title = {Thermodynamic and Structural Properties of Liquid Ionic Salts Obtained by Monte Carlo Computation},
-+
+        Volume = {67},
-+
+        Year = {1971}}
-+
-+
+@article{Smith81,
-+
+        Author = {E.~R. Smith},
-+
+        Date-Added = {2006-03-16 13:47:17 -0500},
-+
+        Date-Modified = {2006-03-16 13:48:34 -0500},
-+
+        Journal = {Proc. R. Soc. London Ser. A},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Smith_ElectrostaticEnergyInIonicCrystals_81.pdf},
-+
+        Pages = {475-505},
-+
+        Title = {Electrostatic Energy in Ionic Crystals},
-+
+        Volume = {375},
-+
+        Year = {1981}}
-+
-+
+@article{Weber00,
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+        Author = {W. Weber and P.~H. H\"{u}nenberger and J.~A. McCammon},
-+
+        Date-Added = {2006-03-16 09:49:22 -0500},
-+
+        Date-Modified = {2006-03-16 09:51:17 -0500},
-+
+        Doi = {10.1021/jp9937757},
-+
+        Journal = {J. Phys. Chem. B},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicityMD_00.pdf},
-+
+        Number = {15},
-+
+        Pages = {3668-3675},
-+
+        Title = {Molecular Dynamics Simulations of a Polyalanine Octapeptide under Ewald Boundary Conditions: Influence of Artificial Periodicity on Peptide Conformation},
-+
+        Volume = {104},
-+
+        Year = {2000}}
-+
-+
+@article{Hunenberger99,
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+        Author = {P.~H. H\"{u}nenberger and J.~A. McCammon},
-+
+        Date-Added = {2006-03-16 09:45:10 -0500},
-+
+        Date-Modified = {2006-03-16 09:49:15 -0500},
-+
+        Journal = {Biophys. Chem.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicity_99.pdf},
-+
+        Pages = {69-88},
-+
+        Title = {Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics study},
-+
+        Volume = {78},
-+
+        Year = {1999}}
-+
-+
+@article{Petersen95,
-+
+        Author = {H.~G. Petersen},
-+
+        Date-Added = {2006-03-16 08:43:02 -0500},
-+
+        Date-Modified = {2006-03-16 08:44:32 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Petersen_AccuracyofPME_95.pdf},
-+
+        Month = {September},
-+
+        Number = {9},
-+
+        Pages = {3668-3679},
-+
+        Title = {Accuracy and efficiency of the particle mesh Ewald method},
-+
+        Volume = {103},
-+
+        Year = {1995}}
-+
-+
+@article{Luty95,
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+        Author = {B.~A. Luty and I.~G. Tironi and W.~F. {van~Gunsteren}},
-+
+        Date-Added = {2006-03-16 08:39:13 -0500},
-+
+        Date-Modified = {2006-03-16 08:41:15 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Luty_LatticeSumElectrostatics_95.pdf},
-+
+        Number = {8},
-+
+        Pages = {3014-3021},
-+
+        Title = {Lattice-sum methods for calculating electrostatic interactions in molecular simulations},
-+
+        Volume = {103},
-+
+        Year = {1995}}
-+
-+
+@article{Barker73,
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+        Author = {J.~A. Barker and R.~O. Watts },
-+
+        Date-Added = {2006-03-15 18:58:17 -0500},
-+
+        Date-Modified = {2006-03-15 21:17:31 -0500},
-+
+        Journal = {Mol. Phys.},
-+
+        Pages = {789=792},
-+
+        Title = {Monte Carlo studies of the dielectric properties of water-like models},
-+
+        Volume = {26},
-+
+        Year = {1973}}
-+
-+
+@article{Adams79,
-+
+        Author = {D.~J. Adams and E.~M. Adams and G.~J. Hills},
-+
+        Date-Added = {2006-03-15 17:46:36 -0500},
-+
+        Date-Modified = {2006-03-15 17:48:04 -0500},
-+
+        Journal = {Mol. Phys.},
-+
+        Number = {2},
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+        Pages = {387-400},
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+        Title = {The computer simulation of polar liquids},
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+        Volume = {38},
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+        Year = {1979}}
-+
-+
+@article{Rahman71,
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+        Author = {A. Rahman and F.~H. Stillinger},
-+
+        Date-Added = {2006-03-15 17:04:53 -0500},
-+
+        Date-Modified = {2006-03-15 17:07:29 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Rahman_MDWater_71.pdf},
-+
+        Month = {October},
-+
+        Number = {7},
-+
+        Pages = {3336-3359},
-+
+        Title = {Molecular Dynamics Study of Liquid Water},
-+
+        Volume = {55},
-+
+        Year = {1971}}
-+
-+
+@article{Andrea83,
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+        Author = {T.~A. Andrea and W.~C. Swope and H.~C. Andersen},
-+
+        Date-Added = {2006-03-15 15:16:12 -0500},
-+
+        Date-Modified = {2006-03-15 15:18:10 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Andrea_LongRangeForcesInWater_83.pdf},
-+
+        Number = {9},
-+
+        Pages = {4576-4584},
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+        Title = {The role of long ranged forces in determining the structure and properties of liquid water},
-+
+        Volume = {79},
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+        Year = {1983}}
-+
-+
+@article{Brush66,
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+        Author = {S.~G. Brush and H.~L. Sahlin and E. Teller},
-+
+        Date-Added = {2006-03-13 16:55:39 -0500},
-+
+        Date-Modified = {2006-03-13 17:01:15 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Brush_MCEwaldApplication_66.pdf},
-+
+        Month = {September},
-+
+        Number = {6},
-+
+        Pages = {2102-2118},
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+        Title = {Monte Carlo Study of a One-Component Plasma. I},
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+        Volume = {45},
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+        Year = {1966}}
-+
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+@article{Ewald21,
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+        Author = {P.~P. Ewald},
-+
+        Date-Added = {2006-03-13 13:32:04 -0500},
-+
+        Date-Modified = {2006-03-16 22:39:27 -0500},
-+
+        Journal = {Ann. Physik},
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+        Pages = {253-287},
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+        Title = {Die Berechnung optischer und elektrostatischer Gitterpotential},
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+        Volume = {64},
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+        Year = {1921}}
-+
-+
+@article{Jones56,
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+        Author = {R.~E. Jones and D.~H. Templeton},
-+
+        Date-Added = {2006-03-13 13:25:58 -0500},
-+
+        Date-Modified = {2006-03-13 13:27:15 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Jones_ChargeShapeFunctions_56.pdf},
-+
+        Number = {5},
-+
+        Pages = {1062-1063},
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+        Title = {Optimum Atomic Shape for Bertaut Series},
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+        Volume = {25},
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+        Year = {1956}}
-+
-+
+@article{Heyes81,
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+        Author = {D.~M. Heyes},
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+        Date-Added = {2006-03-13 13:12:45 -0500},
-+
+        Date-Modified = {2006-03-13 13:14:27 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Keywords = {Empty Keywords},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Heyes_CoulombChargeSpreading_81.pdf},
-+
+        Number = {3},
-+
+        Pages = {1924-1929},
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+        Title = {Electrostatic potentials and fields in infinite point charge lattices},
-+
+        Volume = {74},
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+        Year = {1981}}
-+
-+
+@article{Steinbach94,
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+        Author = {P.~J. Steinbach and B.~R. Brooks},
-+
+        Date-Added = {2006-03-12 19:26:45 -0500},
-+
+        Date-Modified = {2006-03-12 19:29:43 -0500},
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+        Doi = {10.1002/jcc.540150702},
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+        Journal = {J. Comput. Chem.},
-+
+        Number = {7},
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+        Pages = {667-683},
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+        Title = {New spherical-cutoff methods for long-range forces in macromolecular simulation},
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+        Volume = {15},
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+        Year = {1994}}
-+
-+
+@article{deLeeuw80,
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+        Author = {S.~W. {de Leeuw} and J.~W. Perram and E.~R. Smith},
-+
+        Date-Added = {2006-03-07 10:26:31 -0500},
-+
+        Date-Modified = {2006-03-07 10:30:11 -0500},
-+
+        Journal = {Proc. R. Soc. London Ser. A},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/deLeeuw_EwaldSum_80.pdf},
-+
+        Number = {1752},
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+        Pages = {27-56},
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+        Title = {Simulation of Electostatic Systems in Periodic Boundary Conditions. I. Lattice Sums and Dielectric Constants},
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+        Volume = {373},
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+        Year = {1980}}
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+@article{Essmann95,
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+        Author = {U. Essmann and L. Perera and M.~L. Berkowitz and T. Darden and H. Lee and L.~G. Pedersen},
-+
+        Date-Added = {2006-03-05 12:25:25 -0500},
-+
+        Date-Modified = {2006-03-05 12:29:07 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/toCite/Essmann_SmoothPME_95.pdf},
-+
+        Number = {19},
-+
+        Pages = {8577-8593},
-+
+        Title = {A smooth particle mesh Ewald method},
-+
+        Volume = {103},
-+
+        Year = {1995}}
-+
+@article{Kast03,
+        Author = {S.~M. Kast and K.~F. Schmidt and B. Schilling},
+        Date-Added = {2006-02-18 16:47:26 -0500},
+@article{Darden93,
+        Author = {T. Darden and D. York and L. Pedersen},
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+        Date-Modified = {2006-02-15 10:09:52 -0500},
->
+        Date-Modified = {2006-03-16 08:37:25 -0500},
+        Journal = {Journal of Chemical Physics},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Darden_ParticleMeshEwald_93.pdf},
+        Number = 12,
+        Pages = {10089-10092},
+        Title = {Particle mesh Ewald: An $N \log N$ method for Ewald sums in large systems},
+@article{Metropolis53,
+        Author = {N. Metropolis and A.~W. Rosenbluth and M.~N. Rosenbluth and A.~H. Teller and E. Teller},
-<
+        Date-Modified = {2006-02-15 10:29:14 -0500},
->
+        Date-Modified = {2006-03-09 10:44:24 -0500},
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Metropolis_MCCalculations_53.pdf},
+        Pages = {1087-1092},
+        Title = {Equation of State Calculations by Fast Computing Machines},
+        Volume = 21,
+@article{Marrink03,
+        Author = {S.~J. Marrink and A.~E. Mark},
-<
+        Date-Modified = {2006-02-15 10:28:41 -0500},
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+        Date-Modified = {2006-03-16 09:54:52 -0500},
+        Journal = {J. Am. Chem. Soc.},
+        Pages = {15233-15242},
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+        Title = {Molecular Dynaimcs Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles},
->
+        Title = {Molecular Dynamics Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles},
+        Volume = 125,
+        Year = 2003}
+        Year = 2000}
+@article{Meineke05,
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+        Author = {M.~A. Meineke and C.~F. Vardeman~II and T. Lin and C.~J. Fennell and J.~D. Gezelter},
-<
+        Date-Modified = {2006-02-15 09:09:23 -0500},
->
+        Author = {M.~A. Meineke and C.~F. {Vardeman II} and T. Lin and C.~J. Fennell and J.~D. Gezelter},
->
+        Date-Modified = {2006-03-05 12:37:31 -0500},
+        Journal = {J. Comp. Chem.},
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Meineke_OOPSE_05.pdf},
+        Pages = {252-271},
+        Year = 1975}
+@article{Spoel98,
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+        Author = {D. van der Spoel and P.~J. van Maaren and H.~J.~C. Berendsen},
-<
+        Date-Modified = {2006-02-15 10:33:13 -0500},
->
+        Author = {D. {van der Spoel} and P.~J. {van Maaren} and H.~J.~C. Berendsen},
->
+        Date-Modified = {2006-03-05 12:38:54 -0500},
+        Journal = jcp,
+        Number = 24,
+        Pages = {10220-10230},

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Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents): Revision 2595 by chrisfen, Mon Feb 20 12:32:54 2006 UTC vs. Revision 2636 by chrisfen, Sat Mar 18 05:31:17 2006 UTC

Diff Legend

Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents):
Revision 2595 by chrisfen, Mon Feb 20 12:32:54 2006 UTC vs.
Revision 2636 by chrisfen, Sat Mar 18 05:31:17 2006 UTC