[ViewVC] Diff of: group/trunk/electrostaticMethodsPaper/electrostaticMethods.bib

Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents):
Revision 2630 by chrisfen, Thu Mar 16 15:03:20 2006 UTC vs.
Revision 2639 by chrisfen, Mon Mar 20 02:00:26 2006 UTC

+%% http://bibdesk.sourceforge.net/
-<
+%% Created for Chris Fennell at 2006-03-16 10:02:01 -0500
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+%% Created for Chris Fennell at 2006-03-19 20:12:21 -0500
+%% Saved with string encoding Western (ASCII)
+@STRING{rmp = "Rev. Mod. Phys."}
-+
+@article{Roux99,
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+        Author = {B. Roux and T. Simonson},
-+
+        Date-Added = {2006-03-19 20:10:18 -0500},
-+
+        Date-Modified = {2006-03-19 20:12:10 -0500},
-+
+        Journal = {Biophys. Chem.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Roux_ImplicitSolventModels_99.pdf},
-+
+        Pages = {1-20},
-+
+        Title = {Implicit solvent models},
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+        Volume = {78},
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+        Year = {1999}}
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+@article{Rokhlin85,
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+        Date-Added = {2006-03-19 20:02:25 -0500},
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+        Date-Modified = {2006-03-19 20:04:19 -0500},
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+        Doi = {10.1016/0021-9991(85)90002-6},
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+        Journal = {J. Comput. Phys.},
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+        Month = {September},
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+        Number = {2},
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+        Pages = {187-207},
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+        Volume = {60},
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+        Year = {1985}}
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+@article{Grossfield00,
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+        Author = {A. Grossfield and J. Sachs and T.~B. Woolf},
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+        Date-Added = {2006-03-19 19:52:19 -0500},
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+        Date-Modified = {2006-03-19 19:54:14 -0500},
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+        Journal = {Proteins},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Membrane/Grossfield_dipoleLatticeMembrane_00.pdf},
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+        Pages = {211-223},
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+        Title = {Dipole Lattice Membrane Model for Protein Calculations},
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+        Volume = {41},
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+        Year = {2000}}
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+@article{Born20,
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+        Author = {M. Born},
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+        Date-Added = {2006-03-19 18:05:01 -0500},
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+        Date-Modified = {2006-03-19 18:07:42 -0500},
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+        Journal = {Z. Physik},
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+        Title = {Volumen und hydratationswame der ionen},
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+        Volume = {1},
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+        Year = {1920}}
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+@article{Luty96,
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+        Author = {B.~A. Luty and W.~F. {van~Gunsteren}},
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+        Date-Added = {2006-03-18 20:59:19 -0500},
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+        Date-Modified = {2006-03-18 21:00:33 -0500},
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+        Journal = {J. Phys. Chem.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Luty_PPPMElectrostaticCalculations_96.pdf},
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+        Number = {7},
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+        Pages = {2581-2587},
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+        Title = {Calculating Electrostatic Interactions Using the Particle-Particle Particle-Mesh Method with Nonperiodic Long-Range Interactions},
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+        Volume = {100},
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+        Year = {1996}}
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+@article{Rhee89,
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+        Author = {Y.-J. Rhee and J.~W. Halley and J. Hautman and A. Rahman},
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+        Date-Added = {2006-03-18 20:48:07 -0500},
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+        Date-Modified = {2006-03-18 20:51:09 -0500},
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+        Journal = {Phys. Rev. B},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Rhee_finiteDimensionEwald_88.pdf},
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+        Number = {1},
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+        Pages = {36-42},
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+        Title = {Ewald methods in molecular dynamics for systems of finite extent in one of three dimensions},
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+        Volume = {40},
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+        Year = {1989}}
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+@article{Hunenberger99a,
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+        Author = {P.~H. H\"{u}nenberger and J.~A. McCammon},
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+        Date-Added = {2006-03-18 20:14:24 -0500},
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+        Date-Modified = {2006-03-18 20:16:01 -0500},
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+        Journal = {J. Chem. Phys.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Hunenberger_IonSolutionEwaldArtifacts_99.pdf},
-+
+        Number = {4},
-+
+        Pages = {1856-1872},
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+        Title = {Ewald artifacts in computer simulations of ionic solvation and ion -- ion interaction: A continuum electrostatics study},
-+
+        Volume = {110},
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+        Year = {1999}}
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+@article{Roberts95,
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+        Author = {J.~E. Roberts and J. Schnitker},
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+        Date-Added = {2006-03-18 20:12:23 -0500},
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+        Date-Modified = {2006-03-18 20:13:36 -0500},
-+
+        Journal = {J. Phys. Chem.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Roberts_BoundryConditionsIonWater_95.pdf},
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+        Pages = {1322-1331},
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+        Title = {Boundary Conditions in Sumulations of Aqueous Ionic Solutions: A Systematic Study},
-+
+        Volume = {99},
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+        Year = {1995}}
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+@article{Roberts94,
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+        Author = {J.~E. Roberts and J. Schnitker},
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+        Date-Added = {2006-03-18 20:10:37 -0500},
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+        Date-Modified = {2006-03-18 20:12:19 -0500},
-+
+        Journal = {J. Chem. Phys.},
-+
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Roberts_IonSolventEwaldProbs_94.pdf},
-+
+        Number = {6},
-+
+        Pages = {5024-5031},
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+        Title = {How the unit cell surface charge distriubution affects the energetics of ion-solvent interactions in simulations},
-+
+        Volume = {101},
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+        Year = {1994}}
-+
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+@article{Yeh99,
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+        Author = {I.-C. Yeh and M.~L. Berkowitz},
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+        Date-Added = {2006-03-18 19:24:27 -0500},
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+        Date-Modified = {2006-03-18 19:26:08 -0500},
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+        Journal = {J. Chem. Phys.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Yeh_SlabCorrectionEwald_99.pdf},
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+        Number = {7},
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+        Pages = {3155-3162},
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+        Title = {Ewald summation for systems with slab geometry},
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+        Volume = {111},
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+        Year = {1999}}
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+@article{Parry76,
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+        Author = {D.~E. Parry},
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+        Date-Added = {2006-03-18 19:11:01 -0500},
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+        Date-Modified = {2006-03-18 19:14:01 -0500},
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+        Journal = {Surf. Sci.},
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+        Pages = {195},
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+        Title = {Errata: The electrostatic potential in the surface region of an ionic crystal},
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+        Volume = {54},
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+        Year = {1976}}
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+@article{Parry75,
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+        Author = {D.~E. Parry},
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+        Date-Added = {2006-03-18 19:08:40 -0500},
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+        Date-Modified = {2006-03-18 19:16:14 -0500},
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+        Journal = {Surf. Sci.},
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+        Pages = {433-440},
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+        Title = {The electrostatic potential in the surface region of an ionic crystal},
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+        Volume = {49},
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+        Year = {1975}}
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+@article{deLeeuw79,
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+        Author = {S.~W. {de Leeuw} and J.~W. Perram},
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+        Date-Added = {2006-03-18 19:05:18 -0500},
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+        Date-Modified = {2006-03-18 19:07:48 -0500},
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+        Journal = {Mol. Phys.},
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+        Pages = {1313-1327},
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+        Title = {Electrostatic Lattice Sums for Semi-Infinite Lattices},
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+        Volume = {37},
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+        Year = {1979}}
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+@article{Heyes77,
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+        Author = {D.~M. Heyes and M. Barber and J.~H.~R. Clarke},
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+        Date-Added = {2006-03-18 19:02:16 -0500},
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+        Date-Modified = {2006-03-18 19:04:48 -0500},
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+        Journal = {J. Chem. Soc., Faraday Trans. II},
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+        Number = {7},
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+        Pages = {1485-1496},
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+        Title = {Molecular dynamics computer simulation of surface properties of crystalline potassium chloride},
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+        Volume = {73},
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+        Year = {1977}}
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+@article{Spohr97,
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+        Author = {E. Spohr},
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+        Date-Added = {2006-03-18 18:51:02 -0500},
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+        Date-Modified = {2006-03-18 18:52:21 -0500},
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+        Journal = {J. Chem. Phys.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Spohr_2DElectrostatics_97.pdf},
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+        Number = {16},
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+        Pages = {6342-6348},
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+        Title = {Effect of electrostatic boundary conditions and system size on the interfacial properties of water and aqueous solutions},
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+        Volume = {107},
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+        Year = {1997}}
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+@article{York94,
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+        Author = {D. York and W. Yang},
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+        Date-Added = {2006-03-18 11:52:58 -0500},
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+        Date-Modified = {2006-03-18 11:54:19 -0500},
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+        Journal = {J. Chem. Phys.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/York_FFPoissonEwald_94.pdf},
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+        Number = {4},
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+        Pages = {3298-3300},
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+        Title = {The fast Fourier Poisson method for calculating Ewald sums},
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+        Volume = {101},
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+        Year = {1994}}
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+@article{Shimada93,
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+        Author = {J. Shimada and H. Kaneko and T. Takada},
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+        Date-Added = {2006-03-18 11:10:38 -0500},
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+        Date-Modified = {2006-03-18 11:12:10 -0500},
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+        Journal = {J. Comp. Chem.},
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+        Pages = {867-78},
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+        Title = {Efficient calculations of Coulombic interactions in biomolecular simulations with periodic boundary conditions},
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+        Volume = {14},
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+        Year = {1993}}
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+@article{Luty94,
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+        Author = {B.~A. Luty and M.~E. Davis and I.~G. Tironi and W.~F. {van~Gunsteren}},
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+        Date-Added = {2006-03-18 10:37:17 -0500},
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+        Date-Modified = {2006-03-18 11:09:55 -0500},
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+        Journal = {Mol. Simul.},
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+        Pages = {11-20},
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+        Title = {A comparison of particle-particle particle-mesh and Ewald methods for calculating electrostatic interactions in periodic systems},
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+        Volume = {14},
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+        Year = {1994}}
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+@book{Hockney81,
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+        Address = {New York},
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+        Author = {R.~W. Hockney and J.~W. Eastwood},
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+        Date-Added = {2006-03-18 10:33:19 -0500},
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+        Date-Modified = {2006-03-18 10:35:04 -0500},
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+        Publisher = {McGraw-Hill},
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+        Title = {Computer Simulation Using Particles},
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+        Year = {1981}}
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+@article{Sagui99,
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+        Author = {C. Sagui and T.~A. Darden},
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+        Date-Added = {2006-03-17 18:27:01 -0500},
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+        Date-Modified = {2006-03-17 18:29:36 -0500},
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+        Journal = {Annu. Rev. Biophys. Biomol. Struct.},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/toCite/Darden_electrostaticInBiomolecules_99.pdf},
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+        Pages = {155-179},
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+        Title = {Molecular Dynamics Simulations of Biomolecules: Long-Range Electrostatic Effects},
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+        Volume = {28},
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+        Year = {1999}}
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+@article{Perram88,
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+        Author = {J.~W. Perram and H.~G. Petersen and S.~W. {de Leeuw}},
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+        Date-Added = {2006-03-17 13:42:04 -0500},
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+        Date-Modified = {2006-03-17 13:59:01 -0500},
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+        Journal = {Mol. Phys.},
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+        Pages = {875-893},
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+        Title = {An algorithm for the simulation of condensed matter that grows as the 3/2 power of the number of particles},
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+        Year = {1988}}
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+@article{Woodcock71,
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+        Author = {L.~V. Woodcock and K. Singer},
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+        Date-Added = {2006-03-17 11:14:17 -0500},
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+        Pages = {12-30},
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+        Year = {1971}}
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+@article{Smith81,
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+        Author = {E.~R. Smith},
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+        Date-Added = {2006-03-16 13:47:17 -0500},
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+        Date-Modified = {2006-03-16 13:48:34 -0500},
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+        Journal = {Proc. R. Soc. London Ser. A},
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+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Smith_ElectrostaticEnergyInIonicCrystals_81.pdf},
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+        Pages = {475-505},
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+        Title = {Electrostatic Energy in Ionic Crystals},
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+        Volume = {375},
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+        Year = {1981}}
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+@article{Weber00,
+        Author = {W. Weber and P.~H. H\"{u}nenberger and J.~A. McCammon},
+        Date-Added = {2006-03-16 09:49:22 -0500},
+        Volume = {104},
+        Year = {2000}}
-<
+@article{Hunenberger99,
->
+@article{Hunenberger99b,
+        Author = {P.~H. H\"{u}nenberger and J.~A. McCammon},
+        Date-Added = {2006-03-16 09:45:10 -0500},
-<
+        Date-Modified = {2006-03-16 09:49:15 -0500},
->
+        Date-Modified = {2006-03-18 20:16:16 -0500},
+        Journal = {Biophys. Chem.},
+        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicity_99.pdf},
+        Pages = {69-88},
+@article{Barker73,
+        Author = {J.~A. Barker and R.~O. Watts },
+        Date-Added = {2006-03-15 18:58:17 -0500},
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+        Date-Modified = {2006-03-15 21:17:31 -0500},
->
+        Date-Modified = {2006-03-18 11:36:56 -0500},
+        Journal = {Mol. Phys.},
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+        Pages = {789=792},
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+        Pages = {789-792},
+        Title = {Monte Carlo studies of the dielectric properties of water-like models},
+        Volume = {26},
+        Year = {1973}}
+@article{Ewald21,
+        Author = {P.~P. Ewald},
+        Date-Added = {2006-03-13 13:32:04 -0500},
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+        Date-Modified = {2006-03-13 13:32:55 -0500},
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+        Date-Modified = {2006-03-16 22:39:27 -0500},
+        Journal = {Ann. Physik},
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+        Pages = {253},
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+        Pages = {253-287},
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+        Title = {Die Berechnung optischer und elektrostatischer Gitterpotential},
+        Volume = {64},
+        Year = {1921}}

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Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents): Revision 2630 by chrisfen, Thu Mar 16 15:03:20 2006 UTC vs. Revision 2639 by chrisfen, Mon Mar 20 02:00:26 2006 UTC

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Comparing trunk/electrostaticMethodsPaper/electrostaticMethods.bib (file contents):
Revision 2630 by chrisfen, Thu Mar 16 15:03:20 2006 UTC vs.
Revision 2639 by chrisfen, Mon Mar 20 02:00:26 2006 UTC