| 1 | chrisfen | 2594 | %% This BibTeX bibliography file was created using BibDesk. | 
| 2 |  |  | %% http://bibdesk.sourceforge.net/ | 
| 3 | chrisfen | 2575 |  | 
| 4 |  |  |  | 
| 5 | chrisfen | 2610 | %% Created for Chris Fennell at 2006-03-12 20:26:24 -0500 | 
| 6 | chrisfen | 2575 |  | 
| 7 |  |  |  | 
| 8 | chrisfen | 2594 | %% Saved with string encoding Western (ASCII) | 
| 9 | chrisfen | 2575 |  | 
| 10 |  |  |  | 
| 11 | chrisfen | 2594 | @STRING{acp = "Adv. Chem. Phys."} | 
| 12 | chrisfen | 2575 |  | 
| 13 | chrisfen | 2594 | @STRING{cp = "Chem. Phys."} | 
| 14 | chrisfen | 2575 |  | 
| 15 | chrisfen | 2594 | @STRING{cpl = "Chem. Phys. Lett."} | 
| 16 | chrisfen | 2575 |  | 
| 17 | chrisfen | 2594 | @STRING{jacs = "J. Am. Chem. Soc."} | 
| 18 | chrisfen | 2575 |  | 
| 19 | chrisfen | 2594 | @STRING{jcc = "J. Comput. Chem."} | 
| 20 | chrisfen | 2575 |  | 
| 21 | chrisfen | 2594 | @STRING{jcp = "J. Chem. Phys."} | 
| 22 | chrisfen | 2575 |  | 
| 23 | chrisfen | 2594 | @STRING{jml = "J. Mol. Liq."} | 
| 24 | chrisfen | 2575 |  | 
| 25 | chrisfen | 2594 | @STRING{jpc = "J. Phys. Chem."} | 
| 26 | chrisfen | 2575 |  | 
| 27 | chrisfen | 2594 | @STRING{jpca = "J. Phys. Chem. A"} | 
| 28 | chrisfen | 2575 |  | 
| 29 | chrisfen | 2594 | @STRING{jpcb = "J. Phys. Chem. B"} | 
| 30 | chrisfen | 2575 |  | 
| 31 | chrisfen | 2594 | @STRING{mp = "Mol. Phys."} | 
| 32 | chrisfen | 2575 |  | 
| 33 | chrisfen | 2594 | @STRING{pccp = "Phys. Chem. Chem. Phys."} | 
| 34 | chrisfen | 2575 |  | 
| 35 | chrisfen | 2594 | @STRING{pnas = "Proc. Natl. Acad. Sci. USA"} | 
| 36 | chrisfen | 2575 |  | 
| 37 | chrisfen | 2594 | @STRING{pra = "Phys. Rev. A"} | 
| 38 | chrisfen | 2575 |  | 
| 39 | chrisfen | 2594 | @STRING{prb = "Phys. Rev. B"} | 
| 40 | chrisfen | 2575 |  | 
| 41 | chrisfen | 2594 | @STRING{pre = "Phys. Rev. E"} | 
| 42 | chrisfen | 2575 |  | 
| 43 | chrisfen | 2594 | @STRING{prl = "Phys. Rev. Lett."} | 
| 44 | chrisfen | 2575 |  | 
| 45 | chrisfen | 2594 | @STRING{rmp = "Rev. Mod. Phys."} | 
| 46 | chrisfen | 2575 |  | 
| 47 |  |  |  | 
| 48 | chrisfen | 2610 | @article{Steinbach94, | 
| 49 |  |  | Author = {P.~J. Steinbach and B.~R. Brooks}, | 
| 50 |  |  | Date-Added = {2006-03-12 19:26:45 -0500}, | 
| 51 |  |  | Date-Modified = {2006-03-12 19:29:43 -0500}, | 
| 52 |  |  | Doi = {10.1002/jcc.540150702}, | 
| 53 |  |  | Journal = {J. Comput. Chem.}, | 
| 54 |  |  | Number = {7}, | 
| 55 |  |  | Pages = {667-683}, | 
| 56 |  |  | Title = {New spherical-cutoff methods for long-range forces in macromolecular simulation}, | 
| 57 |  |  | Volume = {15}, | 
| 58 |  |  | Year = {1994}} | 
| 59 |  |  |  | 
| 60 | chrisfen | 2609 | @article{deLeeuw80, | 
| 61 |  |  | Author = {S.~W. {de Leeuw} and J.~W. Perram and E.~R. Smith}, | 
| 62 |  |  | Date-Added = {2006-03-07 10:26:31 -0500}, | 
| 63 |  |  | Date-Modified = {2006-03-07 10:30:11 -0500}, | 
| 64 |  |  | Journal = {Proc. R. Soc. London Ser. A}, | 
| 65 |  |  | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/deLeeuw_EwaldSum_80.pdf}, | 
| 66 |  |  | Number = {1752}, | 
| 67 |  |  | Pages = {27-56}, | 
| 68 |  |  | Title = {Simulation of Electostatic Systems in Periodic Boundary Conditions. I. Lattice Sums and Dielectric Constants}, | 
| 69 |  |  | Volume = {373}, | 
| 70 |  |  | Year = {1980}} | 
| 71 |  |  |  | 
| 72 | chrisfen | 2601 | @article{Essmann95, | 
| 73 |  |  | Author = {U. Essmann and L. Perera and M.~L. Berkowitz and T. Darden and H. Lee and L.~G. Pedersen}, | 
| 74 |  |  | Date-Added = {2006-03-05 12:25:25 -0500}, | 
| 75 |  |  | Date-Modified = {2006-03-05 12:29:07 -0500}, | 
| 76 |  |  | Journal = {J. Chem. Phys.}, | 
| 77 |  |  | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/toCite/Essmann_SmoothPME_95.pdf}, | 
| 78 |  |  | Number = {19}, | 
| 79 |  |  | Pages = {8577-8593}, | 
| 80 | chrisfen | 2610 | Title = {A smooth particle mesh Ewald method}, | 
| 81 | chrisfen | 2601 | Volume = {103}, | 
| 82 |  |  | Year = {1995}} | 
| 83 |  |  |  | 
| 84 | chrisfen | 2595 | @article{Kast03, | 
| 85 |  |  | Author = {S.~M. Kast and K.~F. Schmidt and B. Schilling}, | 
| 86 |  |  | Date-Added = {2006-02-18 16:47:26 -0500}, | 
| 87 |  |  | Date-Modified = {2006-02-18 16:51:25 -0500}, | 
| 88 |  |  | Journal = {Chem. Phys. Lett.}, | 
| 89 |  |  | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/WolfApplications/Kast_dampedCoulomb_03.pdf}, | 
| 90 |  |  | Pages = {398-404}, | 
| 91 |  |  | Title = {Integral equation theory for correcting truncation errors in molecular simulations}, | 
| 92 |  |  | Volume = {367}, | 
| 93 |  |  | Year = {2003}} | 
| 94 |  |  |  | 
| 95 | chrisfen | 2594 | @article{Tobias01, | 
| 96 |  |  | Author = {D.~J. Tobias}, | 
| 97 |  |  | Date-Added = {2006-02-15 11:28:58 -0500}, | 
| 98 |  |  | Date-Modified = {2006-02-15 11:32:16 -0500}, | 
| 99 |  |  | Journal = {Curr. Opin. Struct. Biol.}, | 
| 100 |  |  | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Tobias_ElectrostaticsCalculations_01.pdf}, | 
| 101 |  |  | Pages = {253-261}, | 
| 102 |  |  | Title = {Electrostatics calculations: recent methodological advances and applications to membranes}, | 
| 103 |  |  | Volume = {11}, | 
| 104 |  |  | Year = {2001}} | 
| 105 | chrisfen | 2575 |  | 
| 106 | chrisfen | 2594 | @article{Zahn02, | 
| 107 |  |  | Author = {D. Zahn and B. Schilling and S.~M. Kast}, | 
| 108 |  |  | Date-Added = {2006-02-15 09:21:27 -0500}, | 
| 109 |  |  | Date-Modified = {2006-02-15 09:24:07 -0500}, | 
| 110 |  |  | Journal = {J. Phys. Chem. B}, | 
| 111 |  |  | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/WolfApplications/Zahn_enhancedWolfH2O_02.pdf}, | 
| 112 |  |  | Number = {41}, | 
| 113 |  |  | Pages = {10725-10732}, | 
| 114 | chrisfen | 2595 | Title = {Enhancement of the Wolf Damped Coulomb Potential: Static, Dynamic, and Dielectric Properties of Liquid Water from Molecular Simulation}, | 
| 115 | chrisfen | 2594 | Volume = {106}, | 
| 116 |  |  | Year = {2002}} | 
| 117 | chrisfen | 2575 |  | 
| 118 | chrisfen | 2594 | @article{Wolf99, | 
| 119 |  |  | Author = {D. Wolf and P. Keblinski and S.~R. Phillpot and J. Eggebrecht}, | 
| 120 |  |  | Date-Added = {2006-02-15 09:09:39 -0500}, | 
| 121 |  |  | Date-Modified = {2006-02-15 09:25:30 -0500}, | 
| 122 |  |  | Journal = {J. Chem. Phys.}, | 
| 123 |  |  | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/Wolf_electroCorr_99.pdf}, | 
| 124 |  |  | Number = {17}, | 
| 125 |  |  | Pages = {8255-8282}, | 
| 126 |  |  | Rating = {0}, | 
| 127 |  |  | Read = {No}, | 
| 128 | chrisfen | 2595 | Title = {Exact method for the simulation of Coulombic systems by spherically truncated, pairwise}, | 
| 129 | chrisfen | 2594 | Volume = {110}, | 
| 130 |  |  | Year = {1999}} | 
| 131 | chrisfen | 2575 |  | 
| 132 | chrisfen | 2594 | @book{Berne90, | 
| 133 |  |  | Address = {Malabar, Florida}, | 
| 134 |  |  | Author = {B.~J. Berne and R. Pecora}, | 
| 135 |  |  | Publisher = {Robert E. Krieger Publishing Company, Inc.}, | 
| 136 |  |  | Title = {Dynamic Light Scattering}, | 
| 137 |  |  | Year = 1990} | 
| 138 | chrisfen | 2575 |  | 
| 139 | chrisfen | 2594 | @article{Evans77, | 
| 140 |  |  | Author = {D.~J. Evans}, | 
| 141 |  |  | Journal = {Mol. Phys.}, | 
| 142 |  |  | Pages = {317-325}, | 
| 143 |  |  | Title = {On the representation of orientation space}, | 
| 144 |  |  | Volume = 34, | 
| 145 |  |  | Year = 1977} | 
| 146 | chrisfen | 2575 |  | 
| 147 | chrisfen | 2594 | @article{Tuckerman92, | 
| 148 |  |  | Author = {M. Tuckerman and B.~J. Berne and G.~J. Martyna}, | 
| 149 |  |  | Journal = jcp, | 
| 150 |  |  | Pages = {1990-2001}, | 
| 151 |  |  | Title = {Reversible multiple time scale molecular dynamics}, | 
| 152 |  |  | Volume = 97, | 
| 153 |  |  | Year = 1992} | 
| 154 | chrisfen | 2575 |  | 
| 155 | chrisfen | 2594 | @book{Hansen86, | 
| 156 |  |  | Address = {London}, | 
| 157 |  |  | Author = {J.~P. Hansen and I.~R. McDonald}, | 
| 158 |  |  | Chapter = 7, | 
| 159 |  |  | Pages = {199-206}, | 
| 160 |  |  | Publisher = {Academic Press}, | 
| 161 |  |  | Title = {Theory of Simple Liquids}, | 
| 162 |  |  | Year = 1986} | 
| 163 | chrisfen | 2575 |  | 
| 164 | chrisfen | 2594 | @article{Angelani98, | 
| 165 |  |  | Author = {L. Angelani and G. Parisi and G. Ruocco and G. Viliani}, | 
| 166 |  |  | Journal = prl, | 
| 167 |  |  | Number = 21, | 
| 168 |  |  | Pages = {4648-4651}, | 
| 169 |  |  | Title = {Connected Network of Minima as a Model Glass: Long Time Dynamics}, | 
| 170 |  |  | Volume = 81, | 
| 171 |  |  | Year = 1998} | 
| 172 | chrisfen | 2575 |  | 
| 173 | chrisfen | 2594 | @article{Stillinger82, | 
| 174 |  |  | Author = {F.~H. Stillinger and T.~A. Weber}, | 
| 175 |  |  | Journal = pra, | 
| 176 |  |  | Number = 2, | 
| 177 |  |  | Pages = {978-989}, | 
| 178 |  |  | Title = {Hidden structure in liquids}, | 
| 179 |  |  | Volume = 25, | 
| 180 |  |  | Year = 1982} | 
| 181 | chrisfen | 2575 |  | 
| 182 | chrisfen | 2594 | @article{Stillinger83, | 
| 183 |  |  | Author = {F.~H. Stillinger and T.~A. Weber}, | 
| 184 |  |  | Journal = pra, | 
| 185 |  |  | Number = 4, | 
| 186 |  |  | Pages = {2408-2416}, | 
| 187 |  |  | Title = {Dynamics of structural transitions in liquids}, | 
| 188 |  |  | Volume = 28, | 
| 189 |  |  | Year = 1983} | 
| 190 | chrisfen | 2575 |  | 
| 191 | chrisfen | 2594 | @article{Weber84, | 
| 192 |  |  | Author = {T.~A. Weber and F.~H. Stillinger}, | 
| 193 |  |  | Journal = jcp, | 
| 194 |  |  | Number = 6, | 
| 195 |  |  | Pages = {2742-2746}, | 
| 196 |  |  | Title = {The effect of density on the inherent structure in liquids}, | 
| 197 |  |  | Volume = 80, | 
| 198 |  |  | Year = 1984} | 
| 199 | chrisfen | 2575 |  | 
| 200 | chrisfen | 2594 | @article{Stillinger85, | 
| 201 |  |  | Author = {F.~H. Stillinger and T.~A. Weber}, | 
| 202 |  |  | Journal = jcp, | 
| 203 |  |  | Number = 9, | 
| 204 |  |  | Pages = {4767-4775}, | 
| 205 |  |  | Title = {Inherent structure theory of liquids in the hard-sphere limit}, | 
| 206 |  |  | Volume = 83, | 
| 207 |  |  | Year = 1985} | 
| 208 | chrisfen | 2575 |  | 
| 209 | chrisfen | 2594 | @article{Stillinger98, | 
| 210 |  |  | Author = {S. Sastry and P.~G. Debenedetti and F.~H. Stillinger}, | 
| 211 |  |  | Journal = {Nature}, | 
| 212 |  |  | Pages = {554-557}, | 
| 213 |  |  | Title = {Signatures of distinct dynamical regimes in the energy landscape of a glass-forming liquid}, | 
| 214 |  |  | Volume = 393, | 
| 215 |  |  | Year = 1998} | 
| 216 | chrisfen | 2575 |  | 
| 217 | chrisfen | 2594 | @article{Parkhurst75a, | 
| 218 |  |  | Author = {H.~J. {Parkhurst, Jr.} and J. Jonas}, | 
| 219 |  |  | Journal = jcp, | 
| 220 |  |  | Number = 6, | 
| 221 |  |  | Pages = {2698-2704}, | 
| 222 |  |  | Title = {Dense liquids. I. The effect of density and temperature on viscosity of tetramethylsilane and benzene-$\mbox{D}_6$}, | 
| 223 |  |  | Volume = 63, | 
| 224 |  |  | Year = 1975} | 
| 225 | chrisfen | 2575 |  | 
| 226 | chrisfen | 2594 | @article{Parkhurst75b, | 
| 227 |  |  | Author = {H.~J. {Parkhurst, Jr.} and J. Jonas}, | 
| 228 |  |  | Journal = jcp, | 
| 229 |  |  | Number = 6, | 
| 230 |  |  | Pages = {2705-2709}, | 
| 231 |  |  | Title = {Dense liquids. II. The effect of density and temperature on viscosity of tetramethylsilane and benzene}, | 
| 232 |  |  | Volume = 63, | 
| 233 |  |  | Year = 1975} | 
| 234 | chrisfen | 2575 |  | 
| 235 | chrisfen | 2594 | @article{Forester97, | 
| 236 |  |  | Author = {T.~R. Forester and W. Smith and J.~H.~R. Clarke}, | 
| 237 |  |  | Journal = {J. Chem. Soc. - Faraday Transactions}, | 
| 238 |  |  | Pages = {613-619}, | 
| 239 |  |  | Title = {Antibiotic activity of valinomycin - Molecular dynamics simulations involving the water/membrane interface}, | 
| 240 |  |  | Volume = 93, | 
| 241 |  |  | Year = 1997} | 
| 242 | chrisfen | 2575 |  | 
| 243 | chrisfen | 2594 | @article{Tieleman98, | 
| 244 |  |  | Author = {D.~P. Tieleman and H.~J.~C. Berendsen}, | 
| 245 |  |  | Journal = {Biophys. J.}, | 
| 246 |  |  | Pages = {2786-2801}, | 
| 247 |  |  | Title = {A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer}, | 
| 248 |  |  | Volume = 74, | 
| 249 |  |  | Year = 1998} | 
| 250 | chrisfen | 2575 |  | 
| 251 | chrisfen | 2594 | @article{Cascales98, | 
| 252 |  |  | Author = {J.~J.~L. Cascales and J.~G.~H. Cifre and J.~G. de~la~Torre}, | 
| 253 |  |  | Journal = {J. Phys. Chem. B}, | 
| 254 |  |  | Pages = {625-631}, | 
| 255 |  |  | Title = {Anaesthetic mechanism on a model biological membrane: A molecular dynamics simulation study}, | 
| 256 |  |  | Volume = 102, | 
| 257 |  |  | Year = 1998} | 
| 258 | chrisfen | 2575 |  | 
| 259 | chrisfen | 2594 | @article{Bassolino95, | 
| 260 |  |  | Author = {D. Bassolino and H.~E. Alper and T.~R. Stouch}, | 
| 261 |  |  | Journal = {J. Am. Chem. Soc.}, | 
| 262 |  |  | Pages = {4118-4129}, | 
| 263 |  |  | Title = {MECHANISM OF SOLUTE DIFFUSION THROUGH LIPID BILAYER-MEMBRANES BY MOLECULAR-DYNAMICS SIMULATION}, | 
| 264 |  |  | Volume = 117, | 
| 265 |  |  | Year = 1995} | 
| 266 | chrisfen | 2575 |  | 
| 267 | chrisfen | 2594 | @article{Alper95, | 
| 268 |  |  | Author = {H.~E. Alper and T.~R. Stouch}, | 
| 269 |  |  | Journal = {J. Phys. Chem.}, | 
| 270 |  |  | Pages = {5724-5731}, | 
| 271 |  |  | Title = {ORIENTATION AND DIFFUSION OF A DRUG ANALOG IN BIOMEMBRANES - MOLECULAR-DYNAMICS SIMULATIONS}, | 
| 272 |  |  | Volume = 99, | 
| 273 |  |  | Year = 1995} | 
| 274 | chrisfen | 2575 |  | 
| 275 | chrisfen | 2594 | @article{Sok92, | 
| 276 |  |  | Author = {R.~M. Sok and H.~J.~C. Berendsen and W.~F. van~Gunsteren}, | 
| 277 |  |  | Journal = {J. Chem. Phys.}, | 
| 278 |  |  | Pages = {4699-4704}, | 
| 279 |  |  | Title = {MOLECULAR-DYNAMICS SIMULATION OF THE TRANSPORT OF SMALL MOLECULES ACROSS A POLYMER MEMBRANE}, | 
| 280 |  |  | Volume = 96, | 
| 281 |  |  | Year = 1992} | 
| 282 | chrisfen | 2575 |  | 
| 283 | chrisfen | 2594 | @article{Rabani99, | 
| 284 |  |  | Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne}, | 
| 285 |  |  | Journal = prl, | 
| 286 |  |  | Pages = {3649}, | 
| 287 |  |  | Title = {Direct Observation of Stretched-Exponential Relaxation in Low-Temperature Lennard-Jones Systems Using the Cage Correlation Function}, | 
| 288 |  |  | Volume = 82, | 
| 289 |  |  | Year = {1999}} | 
| 290 | chrisfen | 2575 |  | 
| 291 | chrisfen | 2594 | @article{Rabani97, | 
| 292 |  |  | Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne}, | 
| 293 |  |  | Journal = {J. Chem. Phys.}, | 
| 294 |  |  | Pages = {6867-6876}, | 
| 295 |  |  | Title = {Calculating the hopping rate for self-diffusion on rough potential energy surfaces: Cage correlations}, | 
| 296 |  |  | Volume = 107, | 
| 297 |  |  | Year = 1997} | 
| 298 | chrisfen | 2575 |  | 
| 299 | chrisfen | 2594 | @article{Gezelter99, | 
| 300 |  |  | Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne}, | 
| 301 |  |  | Journal = jcp, | 
| 302 |  |  | Pages = 3444, | 
| 303 |  |  | Title = {Methods for calculating the hopping rate for orientational and spatial diffusion in a molecular liquid: $\mbox{CS}_{2}$}, | 
| 304 |  |  | Volume = 110, | 
| 305 |  |  | Year = 1999} | 
| 306 | chrisfen | 2575 |  | 
| 307 | chrisfen | 2594 | @article{Gezelter98, | 
| 308 |  |  | Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne}, | 
| 309 |  |  | Date-Modified = {2006-02-15 10:18:42 -0500}, | 
| 310 |  |  | Journal = jcp, | 
| 311 |  |  | Pages = 4695, | 
| 312 |  |  | Title = {Response to 'Comment on a Critique of the Instantaneous Normal Mode (INM) Approach to Diffusion'}, | 
| 313 |  |  | Volume = 109, | 
| 314 |  |  | Year = 1998} | 
| 315 | chrisfen | 2575 |  | 
| 316 | chrisfen | 2594 | @article{Gezelter97, | 
| 317 |  |  | Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne}, | 
| 318 |  |  | Journal = jcp, | 
| 319 |  |  | Pages = 4618, | 
| 320 |  |  | Title = {Can imaginary instantaneous normal mode frequencies predict barriers to self-diffusion?}, | 
| 321 |  |  | Volume = 107, | 
| 322 |  |  | Year = 1997} | 
| 323 | chrisfen | 2575 |  | 
| 324 | chrisfen | 2594 | @article{Zwanzig83, | 
| 325 |  |  | Author = {R. Zwanzig}, | 
| 326 |  |  | Journal = jcp, | 
| 327 |  |  | Pages = {4507-4508}, | 
| 328 |  |  | Title = {On the relation between self-diffusion and viscosity of liquids}, | 
| 329 |  |  | Volume = 79, | 
| 330 |  |  | Year = 1983} | 
| 331 | chrisfen | 2575 |  | 
| 332 | chrisfen | 2594 | @article{Zwanzig88, | 
| 333 |  |  | Author = {R. Zwanzig}, | 
| 334 |  |  | Journal = {Proc. Natl. Acad. Sci. USA}, | 
| 335 |  |  | Pages = 2029, | 
| 336 |  |  | Title = {Diffusion in rough potential}, | 
| 337 |  |  | Volume = 85, | 
| 338 |  |  | Year = 1988} | 
| 339 | chrisfen | 2575 |  | 
| 340 | chrisfen | 2594 | @article{Stillinger95, | 
| 341 |  |  | Author = {F.~H. Stillinger}, | 
| 342 |  |  | Journal = {Science}, | 
| 343 |  |  | Pages = {1935-1939}, | 
| 344 |  |  | Title = {A Topographic View of Supercooled Liquids and Glass Formation}, | 
| 345 |  |  | Volume = 267, | 
| 346 |  |  | Year = 1995} | 
| 347 | chrisfen | 2575 |  | 
| 348 | chrisfen | 2594 | @incollection{Angell85, | 
| 349 |  |  | Address = {Springfield, VA}, | 
| 350 |  |  | Author = {C.~A. Angell}, | 
| 351 |  |  | Booktitle = {Relaxations in Complex Systems}, | 
| 352 |  |  | Editor = {K.~Ngai and G.~B. Wright}, | 
| 353 |  |  | Pages = 1, | 
| 354 |  |  | Publisher = {National Technical Information Service, U.S. Department of Commerce}, | 
| 355 |  |  | Title = {unknown}, | 
| 356 |  |  | Year = 1985} | 
| 357 | chrisfen | 2575 |  | 
| 358 | chrisfen | 2594 | @article{Bembenek96, | 
| 359 |  |  | Author = {S.~D. Bembenek and B.~B. Laird}, | 
| 360 |  |  | Journal = jcp, | 
| 361 |  |  | Pages = 5199, | 
| 362 |  |  | Title = {The role of localization in glasses and supercooled liquids}, | 
| 363 |  |  | Volume = 104, | 
| 364 |  |  | Year = 1996} | 
| 365 | chrisfen | 2575 |  | 
| 366 | chrisfen | 2594 | @article{Sun97a, | 
| 367 |  |  | Author = {X. Sun and W.~H. Miller}, | 
| 368 |  |  | Date-Modified = {2006-02-15 10:33:35 -0500}, | 
| 369 |  |  | Journal = jcp, | 
| 370 |  |  | Pages = 6346, | 
| 371 |  |  | Title = {Semiclassical initial value representation for electronically nonadiabatic molecular dynamics}, | 
| 372 |  |  | Volume = 106, | 
| 373 |  |  | Year = 1997} | 
| 374 | chrisfen | 2575 |  | 
| 375 | chrisfen | 2594 | @article{Spath96, | 
| 376 |  |  | Author = {B.~W. Spath and W.~H. Miller}, | 
| 377 |  |  | Journal = jcp, | 
| 378 |  |  | Pages = 95, | 
| 379 |  |  | Title = {SEMICLASSICAL CALCULATION OF CUMULATIVE REACTION PROBABILITIES}, | 
| 380 |  |  | Volume = 104, | 
| 381 |  |  | Year = 1996} | 
| 382 | chrisfen | 2575 |  | 
| 383 | chrisfen | 2594 | @book{Warshel91, | 
| 384 |  |  | Address = {New York}, | 
| 385 |  |  | Author = {Arieh Warshel}, | 
| 386 |  |  | Publisher = {Wiley}, | 
| 387 |  |  | Title = {Computer modeling of chemical reactions in enzymes and solutions}, | 
| 388 |  |  | Year = 1991} | 
| 389 | chrisfen | 2575 |  | 
| 390 | chrisfen | 2594 | @article{Vuilleumier97, | 
| 391 |  |  | Author = {Rodolphe Vuilleumier and Daniel Borgis}, | 
| 392 |  |  | Journal = jpc, | 
| 393 |  |  | Title = {Molecular Dynamics of an excess proton in water using a non-additive valence bond force field}, | 
| 394 |  |  | Volume = {in press}, | 
| 395 |  |  | Year = 1997} | 
| 396 | chrisfen | 2575 |  | 
| 397 | chrisfen | 2594 | @article{Kob95a, | 
| 398 |  |  | Author = {W. Kob and H.~C. Andersen}, | 
| 399 |  |  | Journal = pre, | 
| 400 |  |  | Pages = {4626-4641}, | 
| 401 |  |  | Title = {Testing mode-coupling theory for a supercooled binary Lennard-Jones mixtures: The van Hove corraltion function}, | 
| 402 |  |  | Volume = 51, | 
| 403 |  |  | Year = 1995} | 
| 404 | chrisfen | 2575 |  | 
| 405 | chrisfen | 2594 | @article{Kob95b, | 
| 406 |  |  | Author = {W. Kob and H.~C. Andersen}, | 
| 407 |  |  | Journal = pre, | 
| 408 |  |  | Pages = {4134-4153}, | 
| 409 |  |  | Title = {Testing mode-coupling theory for a supercooled binary Lennard-Jones mixtures. II. Intermediate scattering function and dynamic susceptibility}, | 
| 410 |  |  | Volume = 52, | 
| 411 |  |  | Year = 1995} | 
| 412 | chrisfen | 2575 |  | 
| 413 | chrisfen | 2594 | @inproceedings{Gotze89, | 
| 414 |  |  | Address = {Amsterdam}, | 
| 415 |  |  | Author = {W. G{\"{o}}tze}, | 
| 416 |  |  | Booktitle = {Liquids, Freezing and Glass Transitions}, | 
| 417 |  |  | Editor = {J.~P. Hansen and D. Levesque and J. Zinn-Justin}, | 
| 418 |  |  | Pages = {287-503}, | 
| 419 |  |  | Publisher = {North-Holland}, | 
| 420 |  |  | Title = {Aspects of Structural Glass Transitions}, | 
| 421 |  |  | Volume = {I}, | 
| 422 |  |  | Year = 1989} | 
| 423 | chrisfen | 2575 |  | 
| 424 | chrisfen | 2594 | @article{Sun97b, | 
| 425 |  |  | Author = {X. Sun and W.~H. Miller}, | 
| 426 |  |  | Date-Modified = {2006-02-15 10:33:29 -0500}, | 
| 427 |  |  | Journal = jcp, | 
| 428 |  |  | Pages = 916, | 
| 429 |  |  | Title = {Mixed semiclassical-classical approaches to the dynamics of complex molecular systems}, | 
| 430 |  |  | Year = 1997} | 
| 431 | chrisfen | 2575 |  | 
| 432 | chrisfen | 2594 | @article{Keshavamurthy94, | 
| 433 |  |  | Author = {S. Keshavamurthy and W.~H. Miller}, | 
| 434 |  |  | Journal = cpl, | 
| 435 |  |  | Pages = 189, | 
| 436 |  |  | Title = {ivr}, | 
| 437 |  |  | Volume = 218, | 
| 438 |  |  | Year = 1994} | 
| 439 | chrisfen | 2575 |  | 
| 440 | chrisfen | 2594 | @article{Billing75, | 
| 441 |  |  | Author = {G.~D. Billing}, | 
| 442 |  |  | Journal = cpl, | 
| 443 |  |  | Pages = 391, | 
| 444 |  |  | Title = {ehrenfest}, | 
| 445 |  |  | Volume = 30, | 
| 446 |  |  | Year = 1975} | 
| 447 | chrisfen | 2575 |  | 
| 448 | chrisfen | 2594 | @article{Chang90, | 
| 449 |  |  | Author = {Y.-T. Chang and W.~H. Miller}, | 
| 450 |  |  | Journal = jpc, | 
| 451 |  |  | Pages = {5884-5888}, | 
| 452 |  |  | Title = {An Empirical Valence Bond Model for Constructing Global Potential Energy Surfaces for Chemical Reactions of Polyatomic Molecular Systems}, | 
| 453 |  |  | Volume = 94, | 
| 454 |  |  | Year = 1990} | 
| 455 | chrisfen | 2575 |  | 
| 456 | chrisfen | 2594 | @article{Shor94, | 
| 457 |  |  | Author = {P.W. Shor}, | 
| 458 |  |  | Journal = {Proceedings of the 35th Annual Symposium on Foundations of Computer Science}, | 
| 459 |  |  | Pages = {124-134}, | 
| 460 |  |  | Title = {Algorithms for quantum computation: discrete logarithms and factoring}, | 
| 461 |  |  | Year = 1994} | 
| 462 | chrisfen | 2575 |  | 
| 463 | chrisfen | 2594 | @article{Feynman82, | 
| 464 |  |  | Author = {R.~P. Feynman}, | 
| 465 |  |  | Journal = {Int. J. Theor. Phys.}, | 
| 466 |  |  | Pages = {467-488}, | 
| 467 |  |  | Title = {Simulating physics with computers}, | 
| 468 |  |  | Volume = 21, | 
| 469 |  |  | Year = 1982} | 
| 470 | chrisfen | 2575 |  | 
| 471 | chrisfen | 2594 | @article{Grover97, | 
| 472 |  |  | Author = {L.~K. Grover}, | 
| 473 |  |  | Journal = prl, | 
| 474 |  |  | Pages = {4709-4712}, | 
| 475 |  |  | Title = {Quantum computers can search arbitrarily large databases by a single query}, | 
| 476 |  |  | Volume = 79, | 
| 477 |  |  | Year = 1997} | 
| 478 | chrisfen | 2575 |  | 
| 479 | chrisfen | 2594 | @article{Chuang98, | 
| 480 |  |  | Author = {I. Chuang and N. Gershenfeld and M. Kubinec}, | 
| 481 |  |  | Journal = prl, | 
| 482 |  |  | Pages = {3408-3411}, | 
| 483 |  |  | Title = {Experimental Implementation of Fast Quantum Searching}, | 
| 484 |  |  | Volume = 80, | 
| 485 |  |  | Year = 1998} | 
| 486 | chrisfen | 2575 |  | 
| 487 | chrisfen | 2594 | @article{Monroe95, | 
| 488 |  |  | Author = {C. Monroe and D.~M. Meekhof and B.~E. King and W.~M. Itano and D.~J. Wineland}, | 
| 489 |  |  | Journal = prl, | 
| 490 |  |  | Pages = 4714, | 
| 491 |  |  | Title = {Demonstration of a fundamental quantum logic gate}, | 
| 492 |  |  | Volume = 75, | 
| 493 |  |  | Year = 1995} | 
| 494 | chrisfen | 2575 |  | 
| 495 | chrisfen | 2594 | @article{Lent93, | 
| 496 |  |  | Author = {C.~S. Lent and P.~D. Tougaw and W.~Porod and G.~H. Bernstein}, | 
| 497 |  |  | Journal = {Nanotechnology}, | 
| 498 |  |  | Pages = {49-57}, | 
| 499 |  |  | Title = {Quantum Cellular Automata}, | 
| 500 |  |  | Volume = 4, | 
| 501 |  |  | Year = 1993} | 
| 502 | chrisfen | 2575 |  | 
| 503 | chrisfen | 2594 | @article{Barenco95, | 
| 504 |  |  | Author = {A. Barenco and C.~H. Bennett and R. Cleve and D.~P. DiVincenzo and N. Margolus and P. Shor and T. Sleator and J.~A. Smolin and H. Weinfurter}, | 
| 505 |  |  | Journal = {Phys. Rev. A}, | 
| 506 |  |  | Pages = {3457-3467}, | 
| 507 |  |  | Title = {elementary gates for quantum computation}, | 
| 508 |  |  | Volume = 52, | 
| 509 |  |  | Year = 1995} | 
| 510 | chrisfen | 2575 |  | 
| 511 | chrisfen | 2594 | @article{Reinot97, | 
| 512 |  |  | Author = {T. Reinot and J.~M. Hayes and G.~J. Small}, | 
| 513 |  |  | Date-Modified = {2006-02-15 10:31:21 -0500}, | 
| 514 |  |  | Journal = jcp, | 
| 515 |  |  | Pages = {457-466}, | 
| 516 |  |  | Title = {Electronic dephasing and electron-phonon coupling of aluminum phthalocyanine tetrasulphonate in hyperquenched and annealed glassy films of ethanol and methanol over a broad temperature range}, | 
| 517 |  |  | Volume = 106, | 
| 518 |  |  | Year = 1997} | 
| 519 | chrisfen | 2575 |  | 
| 520 | chrisfen | 2594 | @article{Laflamme96, | 
| 521 |  |  | Author = {R. Laflamme and C. Miquel and J.~P. Paz and W.~H. Zurek}, | 
| 522 |  |  | Journal = prl, | 
| 523 |  |  | Pages = 77, | 
| 524 |  |  | Title = {A perfect quantum error correcting code: 5 bit code correcting a general 1 qubit error to encode 1 qubit of information}, | 
| 525 |  |  | Volume = 98, | 
| 526 |  |  | Year = 1996} | 
| 527 | chrisfen | 2575 |  | 
| 528 | chrisfen | 2594 | @article{Shor95, | 
| 529 |  |  | Author = {P.~W. Shor}, | 
| 530 |  |  | Journal = {Phys. Rev. A}, | 
| 531 |  |  | Pages = {2493-2496}, | 
| 532 |  |  | Title = {SCHEME FOR REDUCING DECOHERENCE IN QUANTUM COMPUTER MEMORY}, | 
| 533 |  |  | Volume = 52, | 
| 534 |  |  | Year = 1995} | 
| 535 | chrisfen | 2575 |  | 
| 536 | chrisfen | 2594 | @article{Calderbank96, | 
| 537 |  |  | Author = {A.~R. Calderbank and P.~W. Shor}, | 
| 538 |  |  | Journal = {Phys. Rev. A}, | 
| 539 |  |  | Pages = {1098-1105}, | 
| 540 |  |  | Title = {Good quantum error-correcting codes exist}, | 
| 541 |  |  | Volume = 54, | 
| 542 |  |  | Year = 1996} | 
| 543 | chrisfen | 2575 |  | 
| 544 | chrisfen | 2594 | @article{Steane96, | 
| 545 |  |  | Author = {A.~M. Steane}, | 
| 546 |  |  | Journal = prl, | 
| 547 |  |  | Pages = {793-797}, | 
| 548 |  |  | Title = {Error correcting codes in quantum theory}, | 
| 549 |  |  | Volume = 77, | 
| 550 |  |  | Year = 1996} | 
| 551 | chrisfen | 2575 |  | 
| 552 | chrisfen | 2594 | @article{Gezelter95, | 
| 553 |  |  | Author = {J.~D. Gezelter and W.~H. Miller}, | 
| 554 |  |  | Journal = jcp, | 
| 555 |  |  | Pages = {7868-7876}, | 
| 556 |  |  | Title = {RESONANT FEATURES IN THE ENERGY-DEPENDENCE OF THE RATE OF KETENE ISOMERIZATION}, | 
| 557 |  |  | Volume = 103, | 
| 558 |  |  | Year = 1995} | 
| 559 | chrisfen | 2575 |  | 
| 560 | chrisfen | 2594 | @article{Chakrabarti92, | 
| 561 |  |  | Author = {A.~C. Chakrabarti and D.~W. Deamer}, | 
| 562 |  |  | Journal = {Biochimica et Biophysica Acta}, | 
| 563 |  |  | Pages = {171-177}, | 
| 564 |  |  | Title = {PERMEABILITY OF LIPID BILAYERS TO AMINO-ACIDS AND PHOSPHATE}, | 
| 565 |  |  | Volume = 1111, | 
| 566 |  |  | Year = 1992} | 
| 567 | chrisfen | 2575 |  | 
| 568 | chrisfen | 2594 | @article{Paula96, | 
| 569 |  |  | Author = {S. Paula and A.~G. Volkov and A.~N. VanHoek and T.~H. Haines and D.~W. Deamer}, | 
| 570 |  |  | Journal = {Biophys. J.}, | 
| 571 |  |  | Pages = {339-348}, | 
| 572 |  |  | Title = {Permeation of protons, potassium ions, and small polar molecules through phospholipid bilayers as a function of membrane thickness}, | 
| 573 |  |  | Volume = 70, | 
| 574 |  |  | Year = 1996} | 
| 575 | chrisfen | 2575 |  | 
| 576 | chrisfen | 2594 | @article{Little96, | 
| 577 |  |  | Author = {H.~J. Little}, | 
| 578 |  |  | Journal = {Pharmacology \& Therapeutics}, | 
| 579 |  |  | Pages = {37-58}, | 
| 580 |  |  | Title = {How has molecular pharmacology contributed to our understanding of the mechanism(s) of general anesthesia?}, | 
| 581 |  |  | Volume = 69, | 
| 582 |  |  | Year = 1996} | 
| 583 | chrisfen | 2575 |  | 
| 584 | chrisfen | 2594 | @article{McKinnon92, | 
| 585 |  |  | Author = {S.~J. McKinnon and S.~L. Whittenburg and B. Brooks}, | 
| 586 |  |  | Journal = jpc, | 
| 587 |  |  | Pages = {10497-10506}, | 
| 588 |  |  | Title = {Nonequilibrium Molecular Dynamics Simulation of Oxygen Diffusion through Hexadecane Monolayers with Varying Concentrations of Cholesterol}, | 
| 589 |  |  | Volume = 96, | 
| 590 |  |  | Year = 1992} | 
| 591 | chrisfen | 2575 |  | 
| 592 | chrisfen | 2594 | @article{Venable93, | 
| 593 |  |  | Author = {R.~M. Venable and Y. Zhang and B.~J. Hardy and R.~W. Pastor}, | 
| 594 |  |  | Journal = {Science}, | 
| 595 |  |  | Pages = {223-226}, | 
| 596 |  |  | Title = {Molecular Dynamics Simulations of a Lipid Bilayer and of Hexadecane: An Investigation of Membrane Fluidity}, | 
| 597 |  |  | Volume = 262, | 
| 598 |  |  | Year = 1993} | 
| 599 | chrisfen | 2575 |  | 
| 600 | chrisfen | 2594 | @article{Essmann99, | 
| 601 |  |  | Author = {U. Essmann and M.~L. Berkowitz}, | 
| 602 |  |  | Journal = {Biophys. J.}, | 
| 603 |  |  | Pages = {2081-2089}, | 
| 604 |  |  | Title = {Dynamical properties of phospholipid bilayers from computer simulation}, | 
| 605 |  |  | Volume = 76, | 
| 606 |  |  | Year = 1999} | 
| 607 | chrisfen | 2575 |  | 
| 608 | chrisfen | 2594 | @article{Tu98, | 
| 609 |  |  | Author = {K.~C. Tu and M. Tarek and M.~L. Klein and D. Scharf}, | 
| 610 |  |  | Journal = {Biophys. J.}, | 
| 611 |  |  | Pages = {2123-2134}, | 
| 612 |  |  | Title = {Effects of anesthetics on the structure of a phospholipid bilayer: Molecular dynamics investigation of halothane in the hydrated liquid crystal phase of dipalmitoylphosphatidylcholine}, | 
| 613 |  |  | Volume = 75, | 
| 614 |  |  | Year = 1998} | 
| 615 | chrisfen | 2575 |  | 
| 616 | chrisfen | 2594 | @article{Pomes96, | 
| 617 |  |  | Author = {R. Pomes and B. Roux}, | 
| 618 |  |  | Journal = {Biophys. J.}, | 
| 619 |  |  | Pages = {19-39}, | 
| 620 |  |  | Title = {Structure and dynamics of a proton wire: A theoretical study of H+ translocation along the single-file water chain in the gramicidin a channel}, | 
| 621 |  |  | Volume = 71, | 
| 622 |  |  | Year = 1996} | 
| 623 | chrisfen | 2575 |  | 
| 624 | chrisfen | 2594 | @article{Duwez60, | 
| 625 |  |  | Author = {P. Duwez and R.~H. Willens and W. {Klement~Jr.}}, | 
| 626 |  |  | Journal = {J. Appl. Phys.}, | 
| 627 |  |  | Pages = {1136-1137}, | 
| 628 |  |  | Title = {Continuous Series of Metastable Solid Solutions in Silver-Copper Alloys}, | 
| 629 |  |  | Volume = 31, | 
| 630 |  |  | Year = 1960} | 
| 631 | chrisfen | 2575 |  | 
| 632 | chrisfen | 2594 | @article{Peker93, | 
| 633 |  |  | Author = {A. Peker and W.~L. Johnson}, | 
| 634 |  |  | Journal = {Appl. Phys. Lett.}, | 
| 635 |  |  | Pages = {2342-2344}, | 
| 636 |  |  | Title = {A highly processable metallic-glass - $\mbox{Zr}_{41.2}\mbox{Ti}_{13.8}\mbox{Cu}_{12.5}\mbox{Ni}_{10.0}\mbox{Be}_{22.5}$}, | 
| 637 |  |  | Volume = 63, | 
| 638 |  |  | Year = 1993} | 
| 639 | chrisfen | 2575 |  | 
| 640 | chrisfen | 2594 | @article{ChoiYim97, | 
| 641 |  |  | Author = {H. Choi-Yim and W.~L. Johnson}, | 
| 642 |  |  | Journal = {Appl. Phys. Lett.}, | 
| 643 |  |  | Pages = {3808-3810}, | 
| 644 |  |  | Title = {Bulk metallic glass matrix composites}, | 
| 645 |  |  | Volume = 71, | 
| 646 |  |  | Year = 1997} | 
| 647 | chrisfen | 2575 |  | 
| 648 | chrisfen | 2594 | @article{Sun96, | 
| 649 |  |  | Author = {X. Sun and S. Schneider and U. Geyer and W.~L. Johnson and M.~A. Nicolet}, | 
| 650 |  |  | Journal = {J. Mater. Res.}, | 
| 651 |  |  | Pages = {2738-2743}, | 
| 652 |  |  | Title = {Oxidation and crystallization of an amorphous $\mbox{Zr}_{60}\mbox{Al}_{15}\mbox{Ni}_{25}$ alloy}, | 
| 653 |  |  | Volume = 11, | 
| 654 |  |  | Year = 1996} | 
| 655 | chrisfen | 2575 |  | 
| 656 | chrisfen | 2594 | @article{Heller93, | 
| 657 |  |  | Author = {H. Heller and M. Schaefer and K. Schulten}, | 
| 658 |  |  | Journal = jpc, | 
| 659 |  |  | Pages = {8343-8360}, | 
| 660 |  |  | Title = {MOLECULAR DYNAMICS SIMULATION OF A BILAYER OF 200 LIPIDS IN THE GEL AND IN THE LIQUID-CRYSTAL PHASES}, | 
| 661 |  |  | Volume = 97, | 
| 662 |  |  | Year = 1993} | 
| 663 | chrisfen | 2575 |  | 
| 664 | chrisfen | 2594 | @article{Kushick76, | 
| 665 |  |  | Author = {J. Kushick and B.~J. Berne}, | 
| 666 |  |  | Journal = jcp, | 
| 667 |  |  | Pages = {1362-1367}, | 
| 668 |  |  | Title = {Computer Simulation of anisotropic molecular fluids}, | 
| 669 |  |  | Volume = 64, | 
| 670 |  |  | Year = 1976} | 
| 671 | chrisfen | 2575 |  | 
| 672 | chrisfen | 2594 | @article{Berardi96, | 
| 673 |  |  | Author = {R. Berardi and S. Orlandi and C Zannoni}, | 
| 674 |  |  | Journal = cpl, | 
| 675 |  |  | Pages = {357-362}, | 
| 676 |  |  | Title = {Antiphase structures in polar smectic liquid crystals and their molecular origin}, | 
| 677 |  |  | Volume = 261, | 
| 678 |  |  | Year = 1996} | 
| 679 | chrisfen | 2575 |  | 
| 680 | chrisfen | 2594 | @article{Berardi99, | 
| 681 |  |  | Author = {R. Berardi and S. Orlandi and C. Zannoni}, | 
| 682 |  |  | Journal = {Int. J. Mod. Phys. C}, | 
| 683 |  |  | Pages = {477-484}, | 
| 684 |  |  | Title = {Monte Carlo simulations of rod-like Gay-Berne mesogens with transverse dipoles}, | 
| 685 |  |  | Volume = 10, | 
| 686 |  |  | Year = 1999} | 
| 687 | chrisfen | 2575 |  | 
| 688 | chrisfen | 2594 | @article{Pasterny00, | 
| 689 |  |  | Author = {K. Pasterny and E. Gwozdz and A. Brodka}, | 
| 690 |  |  | Date-Modified = {2006-02-15 10:29:47 -0500}, | 
| 691 |  |  | Journal = {J. Mol. Liq.}, | 
| 692 |  |  | Pages = {173-184}, | 
| 693 |  |  | Title = {Properties of a model liquid crystal: Polar Gay-Berne particles}, | 
| 694 |  |  | Volume = 85, | 
| 695 |  |  | Year = 2000} | 
| 696 | chrisfen | 2575 |  | 
| 697 | chrisfen | 2594 | @article{Jorgensen83, | 
| 698 |  |  | Author = {W.~L. Jorgensen and J. Chandrasekhar and J.~D. Madura and R.~W. Impey and M.~L. Klein}, | 
| 699 |  |  | Journal = jcp, | 
| 700 |  |  | Pages = {926-935}, | 
| 701 |  |  | Title = {COMPARISON OF SIMPLE POTENTIAL FUNCTIONS FOR SIMULATING LIQUID WATER}, | 
| 702 |  |  | Volume = 79, | 
| 703 |  |  | Year = 1983} | 
| 704 | chrisfen | 2575 |  | 
| 705 | chrisfen | 2594 | @article{Berardi98, | 
| 706 |  |  | Author = {R. Berardi and C. Fava and C. Zannoni}, | 
| 707 |  |  | Journal = cpl, | 
| 708 |  |  | Pages = {8-14}, | 
| 709 |  |  | Title = {A Gay-Berne potential for dissimilar biaxial particles}, | 
| 710 |  |  | Volume = 297, | 
| 711 |  |  | Year = 1998} | 
| 712 | chrisfen | 2575 |  | 
| 713 | chrisfen | 2594 | @article{Luckhurst90, | 
| 714 |  |  | Author = {G.~R. Luckhurst and R.~A. Stephens and R.~W. Phippen}, | 
| 715 |  |  | Journal = {Liquid Crystals}, | 
| 716 |  |  | Pages = {451-464}, | 
| 717 |  |  | Title = {Computer simulation studies of anisotropic systems {XIX}. Mesophases formed by the Gay-Berne model mesogen}, | 
| 718 |  |  | Volume = 8, | 
| 719 |  |  | Year = 1990} | 
| 720 | chrisfen | 2575 |  | 
| 721 | chrisfen | 2594 | @article{Gay81, | 
| 722 |  |  | Author = {J.~G. Gay and B.~J. Berne}, | 
| 723 |  |  | Journal = jcp, | 
| 724 |  |  | Pages = {3316-3319}, | 
| 725 |  |  | Title = {MODIFICATION OF THE OVERLAP POTENTIAL TO MIMIC A LINEAR SITE-SITE POTENTIAL}, | 
| 726 |  |  | Volume = 74, | 
| 727 |  |  | Year = 1981} | 
| 728 | chrisfen | 2575 |  | 
| 729 | chrisfen | 2594 | @article{Berne72, | 
| 730 |  |  | Author = {B.~J. Berne and P. Pechukas}, | 
| 731 |  |  | Journal = jcp, | 
| 732 |  |  | Pages = {4213-4216}, | 
| 733 |  |  | Title = {Gaussian Model Potentials for Molecular Interactions}, | 
| 734 |  |  | Volume = 56, | 
| 735 |  |  | Year = 1972} | 
| 736 | chrisfen | 2575 |  | 
| 737 | chrisfen | 2594 | @article{Perram96, | 
| 738 |  |  | Author = {J.~W. Perram and J. Rasmussen and E. Praestgaard and J.~L. Lebowitz}, | 
| 739 |  |  | Journal = pre, | 
| 740 |  |  | Pages = {6565-6572}, | 
| 741 |  |  | Title = {Ellipsoid contact potential: Theory and relation to overlap potentials}, | 
| 742 |  |  | Volume = 54, | 
| 743 |  |  | Year = 1996} | 
| 744 | chrisfen | 2575 |  | 
| 745 | chrisfen | 2594 | @article{Cornell95, | 
| 746 |  |  | Author = {W.~D. Cornell and P. Cieplak and C.~I. Bayly and I.~R. Gould and K.~M. {Merz, Jr.} and D.~M. Ferguson and D.~C. Spellmeyer and T. Fox and J.~W. Caldwell and P.~A. Kollman}, | 
| 747 |  |  | Journal = jacs, | 
| 748 |  |  | Pages = {5179-5197}, | 
| 749 |  |  | Title = {A second generation force field for the simulation of proteins and nucleic acids}, | 
| 750 |  |  | Volume = 117, | 
| 751 |  |  | Year = 1995} | 
| 752 | chrisfen | 2575 |  | 
| 753 | chrisfen | 2594 | @article{Brooks83, | 
| 754 |  |  | Author = {B.~R. Brooks and R.~E. Bruccoleri and B.~D. Olafson and D.~J. States and S. Swaminathan and M. Karplus}, | 
| 755 |  |  | Journal = {J. Comp. Chem.}, | 
| 756 |  |  | Pages = {187-217}, | 
| 757 |  |  | Title = {{\sc charmm}: A Program for Macromolecular Energy, Minimization, and Dynamics Calculations}, | 
| 758 |  |  | Volume = 4, | 
| 759 |  |  | Year = 1983} | 
| 760 | chrisfen | 2575 |  | 
| 761 | chrisfen | 2594 | @incollection{MacKerell98, | 
| 762 |  |  | Address = {New York}, | 
| 763 |  |  | Author = {A.~D. {MacKerell, Jr.} and B. Brooks and C.~L. {Brooks III} and L. Nilsson and B. Roux and Y. Won and and M. Karplus}, | 
| 764 |  |  | Booktitle = {The Encyclopedia of Computational Chemistry}, | 
| 765 |  |  | Editor = {P.~v.~R. {Schleyer, {\it et al.}}}, | 
| 766 |  |  | Pages = {271-277}, | 
| 767 |  |  | Publisher = {John Wiley \& Sons}, | 
| 768 |  |  | Title = {{\sc charmm}: The Energy Function and Its Parameterization with an Overview of the Program}, | 
| 769 |  |  | Volume = 1, | 
| 770 |  |  | Year = 1998} | 
| 771 | chrisfen | 2575 |  | 
| 772 | chrisfen | 2594 | @incollection{Jorgensen98a, | 
| 773 |  |  | Address = {New York}, | 
| 774 |  |  | Author = {W.~L. Jorgensen}, | 
| 775 |  |  | Booktitle = {The Encyclopedia of Computational Chemistry}, | 
| 776 |  |  | Date-Modified = {2006-02-15 10:21:45 -0500}, | 
| 777 |  |  | Editor = {P.~v.~R. {Schleyer, {\it et al.}}}, | 
| 778 |  |  | Pages = {1986-1989}, | 
| 779 |  |  | Publisher = {John Wiley \& Sons}, | 
| 780 |  |  | Title = {OPLS Force Fields}, | 
| 781 |  |  | Volume = 3, | 
| 782 |  |  | Year = 1998} | 
| 783 | chrisfen | 2575 |  | 
| 784 | chrisfen | 2594 | @article{Rabani00, | 
| 785 |  |  | Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne}, | 
| 786 |  |  | Date-Modified = {2006-02-15 10:30:55 -0500}, | 
| 787 |  |  | Journal = prl, | 
| 788 |  |  | Pages = 467, | 
| 789 |  |  | Title = {Reply to `Comment on ``Direct Observation of Stretched-Exponential Relaxation in Low-Temperature Lennard-Jones Systems Using th eCage Correlation Function'' '}, | 
| 790 |  |  | Volume = 85, | 
| 791 |  |  | Year = 2000} | 
| 792 | chrisfen | 2575 |  | 
| 793 | chrisfen | 2594 | @book{Cevc87, | 
| 794 |  |  | Address = {New York}, | 
| 795 |  |  | Author = {G. Cevc and D. Marsh}, | 
| 796 |  |  | Publisher = {John Wiley \& Sons}, | 
| 797 |  |  | Title = {Phospholipid Bilayers}, | 
| 798 |  |  | Year = 1987} | 
| 799 | chrisfen | 2575 |  | 
| 800 | chrisfen | 2594 | @article{Janiak79, | 
| 801 |  |  | Author = {M.~J. Janiak and D.~M. Small and G.~G. Shipley}, | 
| 802 |  |  | Journal = {J. Biol. Chem.}, | 
| 803 |  |  | Pages = {6068-6078}, | 
| 804 |  |  | Title = {Temperature and Compositional Dependence of the Structure of Hydrated Dimyristoyl Lecithin}, | 
| 805 |  |  | Volume = 254, | 
| 806 |  |  | Year = 1979} | 
| 807 | chrisfen | 2575 |  | 
| 808 | chrisfen | 2594 | @book{Tobias90, | 
| 809 |  |  | Address = {Tucson}, | 
| 810 |  |  | Author = {Sheila Tobias}, | 
| 811 |  |  | Publisher = {Research Corp.}, | 
| 812 |  |  | Title = {They're not Dumb. They're Different: Stalking the Second Tier}, | 
| 813 |  |  | Year = 1990} | 
| 814 | chrisfen | 2575 |  | 
| 815 | chrisfen | 2594 | @article{Mazur92, | 
| 816 |  |  | Author = {E. Mazur}, | 
| 817 |  |  | Journal = {Optics and Photonics News}, | 
| 818 |  |  | Pages = 38, | 
| 819 |  |  | Title = {Qualitative vs. Quantititative Thinking: Are we teaching the right thing?}, | 
| 820 |  |  | Volume = 3, | 
| 821 |  |  | Year = 1992} | 
| 822 | chrisfen | 2575 |  | 
| 823 | chrisfen | 2594 | @book{Mazur97, | 
| 824 |  |  | Address = {New Jersey}, | 
| 825 |  |  | Author = {Eric Mazur}, | 
| 826 |  |  | Publisher = {Prentice Hall}, | 
| 827 |  |  | Title = {Peer Instruction: A User's Manual}, | 
| 828 |  |  | Year = 1997} | 
| 829 | chrisfen | 2575 |  | 
| 830 | chrisfen | 2594 | @article{Wigner55, | 
| 831 |  |  | Author = {E.~P. Wigner}, | 
| 832 |  |  | Journal = {Annals of Mathematics}, | 
| 833 |  |  | Pages = {548-564}, | 
| 834 |  |  | Title = {Characteristic Vectors of Bordered Matrices with Infinite Dimensions}, | 
| 835 |  |  | Volume = 62, | 
| 836 |  |  | Year = 1955} | 
| 837 | chrisfen | 2575 |  | 
| 838 | chrisfen | 2594 | @article{Gaukel98, | 
| 839 |  |  | Author = {C. Gaukel and H.~R. Schober}, | 
| 840 |  |  | Journal = {Solid State Comm.}, | 
| 841 |  |  | Pages = {1-5}, | 
| 842 |  |  | Title = {Diffusion Mechanisms in under-cooled Binary Metal Liquids of $\mbox{Zr}_{67}\mbox{Cu}_{33}$}, | 
| 843 |  |  | Volume = 107, | 
| 844 |  |  | Year = 1998} | 
| 845 | chrisfen | 2575 |  | 
| 846 | chrisfen | 2594 | @article{Qi99, | 
| 847 |  |  | Author = {Y. Qi and T. \c{C}a\v{g}in and Y. Kimura and W.~A. {Goddard III}}, | 
| 848 |  |  | Journal = prb, | 
| 849 |  |  | Number = 5, | 
| 850 |  |  | Pages = {3527-3533}, | 
| 851 |  |  | Title = {Molecular-dynamics simulations of glass formation and crystallization in binary liquid metals: $\mbox{Cu-Ag}$ and $\mbox{Cu-Ni}$}, | 
| 852 |  |  | Volume = 59, | 
| 853 |  |  | Year = 1999} | 
| 854 | chrisfen | 2575 |  | 
| 855 | chrisfen | 2594 | @article{Khorunzhy97, | 
| 856 |  |  | Author = {A. Khorunzhy and G.~J. Rodgers}, | 
| 857 |  |  | Journal = {J. Math. Phys.}, | 
| 858 |  |  | Pages = {3300-3320}, | 
| 859 |  |  | Title = {Eigenvalue distribution of large dilute random matrices}, | 
| 860 |  |  | Volume = 38, | 
| 861 |  |  | Year = 1997} | 
| 862 | chrisfen | 2575 |  | 
| 863 | chrisfen | 2594 | @article{Rodgers88, | 
| 864 |  |  | Author = {G.~J. Rodgers and A. Bray}, | 
| 865 |  |  | Journal = {Phys. Rev. B}, | 
| 866 |  |  | Pages = 355703562, | 
| 867 |  |  | Title = {Density of States of a Sparse Random Matrix}, | 
| 868 |  |  | Volume = 37, | 
| 869 |  |  | Year = 1988} | 
| 870 | chrisfen | 2575 |  | 
| 871 | chrisfen | 2594 | @article{Rodgers90, | 
| 872 |  |  | Author = {G.~J. Rodgers and C. {De Dominicis}}, | 
| 873 |  |  | Journal = {J. Phys. A: Math. Gen.}, | 
| 874 |  |  | Pages = {1567-1573}, | 
| 875 |  |  | Title = {Density of states of sparse random matrices}, | 
| 876 |  |  | Volume = 23, | 
| 877 |  |  | Year = 1990} | 
| 878 | chrisfen | 2575 |  | 
| 879 | chrisfen | 2594 | @inproceedings{Barker80, | 
| 880 |  |  | Author = {J.~A. Barker}, | 
| 881 |  |  | Booktitle = {The problem of long-range forces in the computer simulation of condensed matter}, | 
| 882 |  |  | Editor = {D. Ceperley}, | 
| 883 |  |  | Pages = {45-6}, | 
| 884 |  |  | Series = {NRCC Workshop Proceedings}, | 
| 885 |  |  | Title = {Reaction field method for polar fluids}, | 
| 886 |  |  | Volume = 9, | 
| 887 |  |  | Year = 1980} | 
| 888 | chrisfen | 2575 |  | 
| 889 | chrisfen | 2594 | @article{Smith82, | 
| 890 |  |  | Author = {W. Smith}, | 
| 891 |  |  | Journal = {CCP5 Quarterly}, | 
| 892 |  |  | Pages = {13-25}, | 
| 893 |  |  | Title = {Point multipoles in the Ewald summation}, | 
| 894 |  |  | Volume = 4, | 
| 895 |  |  | Year = 1982} | 
| 896 | chrisfen | 2575 |  | 
| 897 | chrisfen | 2594 | @article{Daw84, | 
| 898 |  |  | Author = {M.~S. Daw and M.~I. Baskes}, | 
| 899 |  |  | Journal = prb, | 
| 900 |  |  | Number = 12, | 
| 901 |  |  | Pages = {6443-6453}, | 
| 902 |  |  | Title = {Embedded-atom method: Derivation and application to impurities, surfaces, and other defects in metals}, | 
| 903 |  |  | Volume = 29, | 
| 904 |  |  | Year = 1984} | 
| 905 | chrisfen | 2575 |  | 
| 906 | chrisfen | 2594 | @article{Sutton90, | 
| 907 |  |  | Author = {A.~P. Sutton and J. Chen}, | 
| 908 |  |  | Date-Modified = {2006-02-15 10:33:48 -0500}, | 
| 909 |  |  | Journal = {Phil. Mag. Lett.}, | 
| 910 |  |  | Pages = {139-146}, | 
| 911 |  |  | Title = {Long-Range $\mbox{Finnis Sinclair}$ Potentials}, | 
| 912 |  |  | Volume = 61, | 
| 913 |  |  | Year = 1990} | 
| 914 | chrisfen | 2575 |  | 
| 915 | chrisfen | 2594 | @article{Lu97, | 
| 916 |  |  | Author = {J. Lu and J.~A. Szpunar}, | 
| 917 |  |  | Journal = {Phil. Mag. A}, | 
| 918 |  |  | Pages = {1057-1066}, | 
| 919 |  |  | Title = {Applications of the embedded-atom method to glass formation and crystallization of liquid and glass transition-metal nickel}, | 
| 920 |  |  | Volume = {75}, | 
| 921 |  |  | Year = {1997}} | 
| 922 | chrisfen | 2575 |  | 
| 923 | chrisfen | 2594 | @article{Shlesinger99, | 
| 924 |  |  | Author = {M.~F. Shlesinger and J. Klafter and G. Zumofen}, | 
| 925 |  |  | Journal = {Am. J. Phys.}, | 
| 926 |  |  | Pages = {1253-1259}, | 
| 927 |  |  | Title = {Above, below, and beyond Brownian motion}, | 
| 928 |  |  | Volume = 67, | 
| 929 |  |  | Year = 1999} | 
| 930 | chrisfen | 2575 |  | 
| 931 | chrisfen | 2594 | @article{Klafter96, | 
| 932 |  |  | Author = {J. Klafter and M. Shlesinger and G. Zumofen}, | 
| 933 |  |  | Journal = {Physics Today}, | 
| 934 |  |  | Pages = {33-39}, | 
| 935 |  |  | Title = {Beyond Brownian Motion}, | 
| 936 |  |  | Volume = 49, | 
| 937 |  |  | Year = 1996} | 
| 938 | chrisfen | 2575 |  | 
| 939 | chrisfen | 2594 | @article{Blumen83, | 
| 940 |  |  | Author = {A. Blumen and J. Klafter and G. Zumofen}, | 
| 941 |  |  | Journal = {Phys. Rev. B}, | 
| 942 |  |  | Pages = {3429-3435}, | 
| 943 |  |  | Title = {Recombination in amorphous materials as a continuous-time random-walk problem}, | 
| 944 |  |  | Volume = 27, | 
| 945 |  |  | Year = 1983} | 
| 946 | chrisfen | 2575 |  | 
| 947 | chrisfen | 2594 | @article{Klafter94, | 
| 948 |  |  | Author = {J. Klafter and G. Zumofen}, | 
| 949 |  |  | Journal = jpc, | 
| 950 |  |  | Pages = {7366-7370}, | 
| 951 |  |  | Title = {Probability Distributions for Continuous-Time Random Walks with Long Tails}, | 
| 952 |  |  | Volume = 98, | 
| 953 |  |  | Year = 1994} | 
| 954 | chrisfen | 2575 |  | 
| 955 | chrisfen | 2594 | @article{Dzugutov92, | 
| 956 |  |  | Author = {M. Dzugutov}, | 
| 957 |  |  | Journal = pra, | 
| 958 |  |  | Pages = {R2984-R2987}, | 
| 959 |  |  | Title = {Glass formation in a simple monatomic liquid with icosahedral inherent local order}, | 
| 960 |  |  | Volume = 46, | 
| 961 |  |  | Year = 1992} | 
| 962 | chrisfen | 2575 |  | 
| 963 | chrisfen | 2594 | @article{Moore94, | 
| 964 |  |  | Author = {P. Moore and T. Keyes}, | 
| 965 |  |  | Journal = jcp, | 
| 966 |  |  | Pages = 6709, | 
| 967 |  |  | Title = {Normal Mode Analysis of Liquid $\mbox{CS}_2$: Velocity Correlation Functions and Self-Diffusion Constants}, | 
| 968 |  |  | Volume = 100, | 
| 969 |  |  | Year = 1994} | 
| 970 | chrisfen | 2575 |  | 
| 971 | chrisfen | 2594 | @article{Seeley89, | 
| 972 |  |  | Author = {G. Seeley and T. Keyes}, | 
| 973 |  |  | Journal = jcp, | 
| 974 |  |  | Pages = {5581-5586}, | 
| 975 |  |  | Title = {Normal-mode analysis of liquid-state dynamics}, | 
| 976 |  |  | Volume = 91, | 
| 977 |  |  | Year = 1989} | 
| 978 | chrisfen | 2575 |  | 
| 979 | chrisfen | 2594 | @article{Madan90, | 
| 980 |  |  | Author = {B. Madan and T. Keyes and G. Seeley}, | 
| 981 |  |  | Journal = jcp, | 
| 982 |  |  | Pages = {7565-7569}, | 
| 983 |  |  | Title = {Diffusion in supercooled liquids via normal mode analysis}, | 
| 984 |  |  | Volume = 92, | 
| 985 |  |  | Year = 1990} | 
| 986 | chrisfen | 2575 |  | 
| 987 | chrisfen | 2594 | @article{Madan91, | 
| 988 |  |  | Author = {B. Madan and T. Keyes and G. Seeley}, | 
| 989 |  |  | Journal = jcp, | 
| 990 |  |  | Pages = {6762-6769}, | 
| 991 |  |  | Title = {Normal mode analysis of the velocity correlation function in supercooled liquids}, | 
| 992 |  |  | Volume = 94, | 
| 993 |  |  | Year = 1991} | 
| 994 | chrisfen | 2575 |  | 
| 995 | chrisfen | 2594 | @article{Buchner92, | 
| 996 |  |  | Author = {M. Buchner, B.~M. Ladanyi and R.~M. Stratt}, | 
| 997 |  |  | Journal = jcp, | 
| 998 |  |  | Pages = {8522-8535}, | 
| 999 |  |  | Title = {The short-time dynamics of molecular liquids. Instantaneous-normal-mode theory}, | 
| 1000 |  |  | Volume = 97, | 
| 1001 |  |  | Year = 1992} | 
| 1002 | chrisfen | 2575 |  | 
| 1003 | chrisfen | 2594 | @article{Wan94, | 
| 1004 |  |  | Author = {Yi. Wan and R.~M. Stratt}, | 
| 1005 |  |  | Journal = jcp, | 
| 1006 |  |  | Pages = {5123-5138}, | 
| 1007 |  |  | Title = {Liquid theory for the instantaneous normal modes of a liquid}, | 
| 1008 |  |  | Volume = 100, | 
| 1009 |  |  | Year = 1994} | 
| 1010 | chrisfen | 2575 |  | 
| 1011 | chrisfen | 2594 | @article{Stratt95, | 
| 1012 |  |  | Author = {R.~M. Stratt}, | 
| 1013 |  |  | Journal = {Acc. Chem. Res.}, | 
| 1014 |  |  | Pages = {201-207}, | 
| 1015 |  |  | Title = {The instantaneous normal modes of liquids}, | 
| 1016 |  |  | Volume = 28, | 
| 1017 |  |  | Year = 1995} | 
| 1018 | chrisfen | 2575 |  | 
| 1019 | chrisfen | 2594 | @article{Nitzan95, | 
| 1020 |  |  | Author = {G.~V. Vijayadamodar and A. Nitzan}, | 
| 1021 |  |  | Journal = jcp, | 
| 1022 |  |  | Pages = {2169-2177}, | 
| 1023 |  |  | Title = {On the application of instantaneous normal mode analysis to long time dynamics of liquids}, | 
| 1024 |  |  | Volume = 103, | 
| 1025 |  |  | Year = 1995} | 
| 1026 | chrisfen | 2575 |  | 
| 1027 | chrisfen | 2594 | @article{Ribeiro98, | 
| 1028 |  |  | Author = {M.~C.~C. Ribeiro and P.~A. Madden}, | 
| 1029 |  |  | Journal = jcp, | 
| 1030 |  |  | Pages = {3256-3263}, | 
| 1031 |  |  | Title = {Unstable Modes in Ionic Melts}, | 
| 1032 |  |  | Volume = 108, | 
| 1033 |  |  | Year = 1998} | 
| 1034 | chrisfen | 2575 |  | 
| 1035 | chrisfen | 2594 | @article{Keyes98, | 
| 1036 |  |  | Author = {T. Keyes and W.-X. Li and U.~Z{\"{u}}rcher}, | 
| 1037 |  |  | Date-Modified = {2006-02-15 10:22:13 -0500}, | 
| 1038 |  |  | Journal = jcp, | 
| 1039 |  |  | Pages = {4693-4694}, | 
| 1040 |  |  | Title = {Comment on a critique of the instantaneous normal mode (INM) approach to diffusion (J. Chem. Phys. {\bf 107}, 4618 (1997))}, | 
| 1041 |  |  | Volume = 109, | 
| 1042 |  |  | Year = 1998} | 
| 1043 | chrisfen | 2575 |  | 
| 1044 | chrisfen | 2594 | @article{Alemany98, | 
| 1045 |  |  | Author = {M.~M.~G. Alemany and C. Rey and L.~J. Gallego}, | 
| 1046 |  |  | Journal = jcp, | 
| 1047 |  |  | Pages = {5175-5176}, | 
| 1048 |  |  | Title = {Transport coefficients of liquid transition metals: A computer simulation study using the embedded atom model}, | 
| 1049 |  |  | Volume = 109, | 
| 1050 |  |  | Year = 1998} | 
| 1051 | chrisfen | 2575 |  | 
| 1052 | chrisfen | 2594 | @article{Belonoshko00, | 
| 1053 |  |  | Author = {A.~B. Belonoshko and R. Ahuja and O. Eriksson and B. Johansson}, | 
| 1054 |  |  | Journal = prb, | 
| 1055 |  |  | Pages = {3838-3844}, | 
| 1056 |  |  | Title = {Quasi ab initio molecular dynamic study of Cu melting}, | 
| 1057 |  |  | Volume = 61, | 
| 1058 |  |  | Year = 2000} | 
| 1059 | chrisfen | 2575 |  | 
| 1060 | chrisfen | 2594 | @article{Banhart92, | 
| 1061 |  |  | Author = {J. Banhart and H. Ebert and R. Kuentzler and J. Voitl\"{a}nder}, | 
| 1062 |  |  | Journal = prb, | 
| 1063 |  |  | Pages = {9968-9975}, | 
| 1064 |  |  | Title = {Electronic properties of single-phased metastable Ag-Cu alloys}, | 
| 1065 |  |  | Volume = 46, | 
| 1066 |  |  | Year = 1992} | 
| 1067 | chrisfen | 2575 |  | 
| 1068 | chrisfen | 2594 | @article{Wendt78, | 
| 1069 |  |  | Author = {H. Wendt and F.~F. Abraham}, | 
| 1070 |  |  | Journal = prl, | 
| 1071 |  |  | Pages = 1244, | 
| 1072 |  |  | Volume = 41, | 
| 1073 |  |  | Year = 1978} | 
| 1074 | chrisfen | 2575 |  | 
| 1075 | chrisfen | 2594 | @article{Lewis91, | 
| 1076 |  |  | Author = {L.~J. Lewis}, | 
| 1077 |  |  | Journal = prb, | 
| 1078 |  |  | Pages = {4245-4254}, | 
| 1079 |  |  | Title = {Atomic dynamics through the glass transition}, | 
| 1080 |  |  | Volume = 44, | 
| 1081 |  |  | Year = 1991} | 
| 1082 | chrisfen | 2575 |  | 
| 1083 | chrisfen | 2594 | @article{Liu92, | 
| 1084 |  |  | Author = {R.~S. Liu and D.~W. Qi and S. Wang}, | 
| 1085 |  |  | Journal = prb, | 
| 1086 |  |  | Pages = {451-453}, | 
| 1087 |  |  | Title = {Subpeaks of structure factors for rapidly quenched metals}, | 
| 1088 |  |  | Volume = 45, | 
| 1089 |  |  | Year = 1992} | 
| 1090 | chrisfen | 2575 |  | 
| 1091 | chrisfen | 2594 | @article{Anheuser94, | 
| 1092 |  |  | Author = {K. Anheuser and J.P. Northover}, | 
| 1093 |  |  | Journal = {Brit. Num. J.}, | 
| 1094 |  |  | Pages = 22, | 
| 1095 |  |  | Title = {Silver plating of Roman and Celtic coins from Britan - a technical study}, | 
| 1096 |  |  | Volume = 64, | 
| 1097 |  |  | Year = 1994} | 
| 1098 | chrisfen | 2575 |  | 
| 1099 | chrisfen | 2594 | @article{Pense92, | 
| 1100 |  |  | Author = {A. W. Pense}, | 
| 1101 |  |  | Journal = {Mat. Char.}, | 
| 1102 |  |  | Pages = 213, | 
| 1103 |  |  | Title = {The Decline and Fall of the Roman Denarius}, | 
| 1104 |  |  | Volume = 29, | 
| 1105 |  |  | Year = 1992} | 
| 1106 | chrisfen | 2575 |  | 
| 1107 | chrisfen | 2594 | @article{Ngai81, | 
| 1108 |  |  | Author = {K.~L. Ngai and F.-S. Liu}, | 
| 1109 |  |  | Journal = prb, | 
| 1110 |  |  | Pages = {1049-1065}, | 
| 1111 |  |  | Title = {Dispersive diffusion transport and noise, time-dependent diffusion coefficient, generalized Einstein-Nernst relation, and dispersive diffusion-controlled unimolecular and bimolecular reactions}, | 
| 1112 |  |  | Volume = 24, | 
| 1113 |  |  | Year = 1981} | 
| 1114 | chrisfen | 2575 |  | 
| 1115 | chrisfen | 2594 | @unpublished{Truhlar00, | 
| 1116 |  |  | Author = {D.~G. Truhlar and A. Kohen}, | 
| 1117 |  |  | Date-Modified = {2006-02-15 16:35:52 -0500}, | 
| 1118 |  |  | Note = {private correspondence}, | 
| 1119 |  |  | Year = {2000}} | 
| 1120 | chrisfen | 2575 |  | 
| 1121 | chrisfen | 2594 | @article{Truhlar78, | 
| 1122 |  |  | Author = {Donald G. Truhlar}, | 
| 1123 |  |  | Journal = {J. Chem. Ed.}, | 
| 1124 |  |  | Pages = 309, | 
| 1125 |  |  | Title = {Interpretation of the Activation Energy}, | 
| 1126 |  |  | Volume = 55, | 
| 1127 |  |  | Year = 1978} | 
| 1128 | chrisfen | 2575 |  | 
| 1129 | chrisfen | 2594 | @book{Tolman27, | 
| 1130 |  |  | Address = {New York}, | 
| 1131 |  |  | Author = {R. C. Tolman}, | 
| 1132 |  |  | Pages = {260-270}, | 
| 1133 |  |  | Publisher = {Chemical Catalog Co.}, | 
| 1134 |  |  | Title = {Statistical Mechanics with Applications to Physics and Chemistry}, | 
| 1135 |  |  | Year = 1927} | 
| 1136 | chrisfen | 2575 |  | 
| 1137 | chrisfen | 2594 | @article{Tolman20, | 
| 1138 |  |  | Author = {R. C. Tolman}, | 
| 1139 |  |  | Journal = jacs, | 
| 1140 |  |  | Pages = 2506, | 
| 1141 |  |  | Title = {Statistical Mechanics Applied to Chemical Kinetics}, | 
| 1142 |  |  | Volume = 42, | 
| 1143 |  |  | Year = 1920} | 
| 1144 | chrisfen | 2575 |  | 
| 1145 | chrisfen | 2594 | @article{Ediger96, | 
| 1146 |  |  | Author = {M.D. Ediger and C.A. Angell and Sidney R. Nagel}, | 
| 1147 |  |  | Date-Modified = {2006-02-15 10:16:35 -0500}, | 
| 1148 |  |  | Journal = jpc, | 
| 1149 |  |  | Pages = 13200, | 
| 1150 |  |  | Title = {Supercooled Liquids and Glasses}, | 
| 1151 |  |  | Volume = 100, | 
| 1152 |  |  | Year = 1996} | 
| 1153 | chrisfen | 2575 |  | 
| 1154 | chrisfen | 2594 | @inbook{Blumen86, | 
| 1155 |  |  | Address = {Amsterdam}, | 
| 1156 |  |  | Author = {A. Blumen and J. Klafter and G. Zumofen}, | 
| 1157 |  |  | Chapter = {Reactions in Disordered Media Modelled by Fractals}, | 
| 1158 |  |  | Editor = {Luciano Peitronero and E. Tosatti}, | 
| 1159 |  |  | Pages = 399, | 
| 1160 |  |  | Publisher = {North-Holland}, | 
| 1161 |  |  | Series = {International Symposium on Fractals in Physics}, | 
| 1162 |  |  | Title = {Fractals in Physics}, | 
| 1163 |  |  | Year = 1986} | 
| 1164 | chrisfen | 2575 |  | 
| 1165 | chrisfen | 2594 | @article{Shlesinger84, | 
| 1166 |  |  | Author = {M.~F. Shlesinger and E.~W. Montroll}, | 
| 1167 |  |  | Journal = {Proc. Natl. Acad. Sci. USA}, | 
| 1168 |  |  | Pages = {1280-1283}, | 
| 1169 |  |  | Title = {On the Williams-Watts function of dielectric relaxation}, | 
| 1170 |  |  | Volume = 81, | 
| 1171 |  |  | Year = 1984} | 
| 1172 | chrisfen | 2575 |  | 
| 1173 | chrisfen | 2594 | @article{Klafter86, | 
| 1174 |  |  | Author = {J. Klafter and M.~F. Shlesinger}, | 
| 1175 |  |  | Journal = {Proc. Natl. Acad. Sci. USA}, | 
| 1176 |  |  | Pages = {848-851}, | 
| 1177 |  |  | Title = {On the relationship among three theories of relaxation in disordered systems}, | 
| 1178 |  |  | Volume = 83, | 
| 1179 |  |  | Year = 1986} | 
| 1180 | chrisfen | 2575 |  | 
| 1181 | chrisfen | 2594 | @article{Li01, | 
| 1182 |  |  | Author = {Z. Li and M. Lieberman and W. Hill}, | 
| 1183 |  |  | Date-Modified = {2006-02-15 10:25:36 -0500}, | 
| 1184 |  |  | Journal = {Langmuir}, | 
| 1185 |  |  | Pages = {4887-4894}, | 
| 1186 |  |  | Title = {{\sc xps} and {\sc sers} Study of Silicon Phthalocyanine Monolayers: umbrella vs. octopus design strategies for formation of oriented {\sc sam}s}, | 
| 1187 |  |  | Volume = 17, | 
| 1188 |  |  | Year = 2001} | 
| 1189 | chrisfen | 2575 |  | 
| 1190 | chrisfen | 2594 | @article{Evans93, | 
| 1191 |  |  | Author = {J.~W. Evans}, | 
| 1192 |  |  | Date-Modified = {2006-02-15 10:17:03 -0500}, | 
| 1193 |  |  | Journal = rmp, | 
| 1194 |  |  | Pages = {1281-1329}, | 
| 1195 |  |  | Title = {Random and Cooperative Sequential Adsorption}, | 
| 1196 |  |  | Volume = 65, | 
| 1197 |  |  | Year = 1993} | 
| 1198 | chrisfen | 2575 |  | 
| 1199 | chrisfen | 2594 | @article{Dwyer1977, | 
| 1200 |  |  | Author = {D.~J. Dwyer and G.~W. Simmons and R.~P. Wei}, | 
| 1201 |  |  | Journal = {Surf. Sci.}, | 
| 1202 |  |  | Pages = 617, | 
| 1203 |  |  | Volume = 64, | 
| 1204 |  |  | Year = 1977} | 
| 1205 | chrisfen | 2575 |  | 
| 1206 | chrisfen | 2594 | @article{Macritche78, | 
| 1207 |  |  | Author = {F. MacRitche}, | 
| 1208 |  |  | Date-Modified = {2006-02-15 10:27:37 -0500}, | 
| 1209 |  |  | Journal = {Adv. Protein Chem.}, | 
| 1210 |  |  | Pages = 283, | 
| 1211 |  |  | Volume = 32, | 
| 1212 |  |  | Year = 1978} | 
| 1213 | chrisfen | 2575 |  | 
| 1214 | chrisfen | 2594 | @article{Feder80, | 
| 1215 |  |  | Author = {J. Feder}, | 
| 1216 |  |  | Date-Modified = {2006-02-15 10:17:21 -0500}, | 
| 1217 |  |  | Journal = {J. Theor. Biol.}, | 
| 1218 |  |  | Pages = 237, | 
| 1219 |  |  | Volume = 87, | 
| 1220 |  |  | Year = 1980} | 
| 1221 | chrisfen | 2575 |  | 
| 1222 | chrisfen | 2594 | @article{Ramsden93, | 
| 1223 |  |  | Author = {J.~J. Ramsden}, | 
| 1224 |  |  | Date-Modified = {2006-02-15 10:31:03 -0500}, | 
| 1225 |  |  | Journal = prl, | 
| 1226 |  |  | Pages = 295, | 
| 1227 |  |  | Volume = 71, | 
| 1228 |  |  | Year = 1993} | 
| 1229 | chrisfen | 2575 |  | 
| 1230 | chrisfen | 2594 | @article{Egelhoff89, | 
| 1231 |  |  | Author = {W.~F. Egelhoff and I. Jacob}, | 
| 1232 |  |  | Date-Modified = {2006-02-15 10:16:54 -0500}, | 
| 1233 |  |  | Journal = prl, | 
| 1234 |  |  | Pages = 921, | 
| 1235 |  |  | Volume = 62, | 
| 1236 |  |  | Year = 1989} | 
| 1237 | chrisfen | 2575 |  | 
| 1238 | chrisfen | 2594 | @article{Viot92a, | 
| 1239 |  |  | Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot}, | 
| 1240 |  |  | Date-Modified = {2006-02-15 10:12:51 -0500}, | 
| 1241 |  |  | Journal = jpc, | 
| 1242 |  |  | Pages = {5212-5218}, | 
| 1243 |  |  | Title = {RANDOM SEQUENTIAL ADSORPTION OF ANISOTROPIC PARTICLES 1. JAMMING LIMIT AND ASYMPTOTIC-BEHAVIOR}, | 
| 1244 |  |  | Volume = 97, | 
| 1245 |  |  | Year = 1992} | 
| 1246 | chrisfen | 2575 |  | 
| 1247 | chrisfen | 2594 | @article{Viot92b, | 
| 1248 |  |  | Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot}, | 
| 1249 |  |  | Date-Modified = {2006-02-15 10:12:57 -0500}, | 
| 1250 |  |  | Journal = {Physica A}, | 
| 1251 |  |  | Pages = {248-252}, | 
| 1252 |  |  | Title = {SATURATION COVERAGE IN RANDOM SEQUENTIAL ADSORPTION OF VERY ELONGATED PARTICLES}, | 
| 1253 |  |  | Volume = 191, | 
| 1254 |  |  | Year = 1992} | 
| 1255 | chrisfen | 2575 |  | 
| 1256 | chrisfen | 2594 | @article{Dobson1987, | 
| 1257 |  |  | Author = {B.~W. Dobson}, | 
| 1258 |  |  | Journal = prb, | 
| 1259 |  |  | Pages = 1068, | 
| 1260 |  |  | Volume = 36, | 
| 1261 |  |  | Year = 1987} | 
| 1262 | chrisfen | 2575 |  | 
| 1263 | chrisfen | 2594 | @article{Boyer95, | 
| 1264 |  |  | Author = {D. Boyer and P. Viot and G. Tarjus and J. Talbot}, | 
| 1265 |  |  | Date-Modified = {2006-02-15 10:15:52 -0500}, | 
| 1266 |  |  | Journal = jcp, | 
| 1267 |  |  | Pages = 1607, | 
| 1268 |  |  | Title = {PERCUS-$\mbox{Y}$EVICK-LIKE INTERGRAL EQUATION FOR RANDOM SEQUENTIAL ADSORPTION}, | 
| 1269 |  |  | Volume = 103, | 
| 1270 |  |  | Year = 1995} | 
| 1271 | chrisfen | 2575 |  | 
| 1272 | chrisfen | 2594 | @article{Viot92c, | 
| 1273 |  |  | Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot}, | 
| 1274 |  |  | Date-Modified = {2006-02-15 10:13:03 -0500}, | 
| 1275 |  |  | Journal = {Physica A}, | 
| 1276 |  |  | Pages = {248-252}, | 
| 1277 |  |  | Title = {SATURATION COVERAGE OF HIGHLY ELONGATED ANISOTROPIC PARTICLES}, | 
| 1278 |  |  | Volume = 191, | 
| 1279 |  |  | Year = 1992} | 
| 1280 | chrisfen | 2575 |  | 
| 1281 | chrisfen | 2594 | @article{Ricci94, | 
| 1282 |  |  | Author = {S.~M. Ricci and J. Talbot and G. Tarjus and P. Viot}, | 
| 1283 |  |  | Date-Modified = {2006-02-15 10:31:32 -0500}, | 
| 1284 |  |  | Journal = jcp, | 
| 1285 |  |  | Pages = 9164, | 
| 1286 |  |  | Title = {A STRUCTURAL COMPARISON OF RANDOM SEQUENTIAL ADSORPTION AND EQUILIBRIUM CONFIGURATIONS OF SPHEROCYLINDERS}, | 
| 1287 |  |  | Volume = 101, | 
| 1288 |  |  | Year = 1994} | 
| 1289 | chrisfen | 2575 |  | 
| 1290 | chrisfen | 2594 | @article{Semmler98, | 
| 1291 |  |  | Author = {M. Semmler and E.~K. Mann and J. Ricka and M. Borkovec}, | 
| 1292 |  |  | Date-Modified = {2006-02-15 10:14:46 -0500}, | 
| 1293 |  |  | Journal = {Langmuir}, | 
| 1294 |  |  | Pages = {5127-5132}, | 
| 1295 |  |  | Title = {Diffusional Deposition of Charged Latex Particles on Water-Solid Interfaces at Low Ionic Strength}, | 
| 1296 |  |  | Volume = 14, | 
| 1297 |  |  | Year = 1998} | 
| 1298 | chrisfen | 2575 |  | 
| 1299 | chrisfen | 2594 | @article{Solomon86, | 
| 1300 |  |  | Author = {H. Solomon and H. Weiner}, | 
| 1301 |  |  | Date-Modified = {2006-02-15 10:10:38 -0500}, | 
| 1302 |  |  | Journal = {Comm. Statistics A}, | 
| 1303 |  |  | Pages = {2571-2607}, | 
| 1304 |  |  | Title = {A REVIEW OF THE PACKING PROBLEM}, | 
| 1305 |  |  | Volume = 15, | 
| 1306 |  |  | Year = 1986} | 
| 1307 | chrisfen | 2575 |  | 
| 1308 | chrisfen | 2594 | @article{Bonnier93, | 
| 1309 |  |  | Author = {B. Bonnier and M. Hontebeyrie and C. Meyers}, | 
| 1310 |  |  | Date-Modified = {2006-02-15 10:08:35 -0500}, | 
| 1311 |  |  | Journal = {Physica A}, | 
| 1312 |  |  | Pages = {1-10}, | 
| 1313 |  |  | Title = {ON THE RANDOM FILLING OF R(D) BY NONOVERLAPPING D-DIMENSIONAL CUBES}, | 
| 1314 |  |  | Volume = 198, | 
| 1315 |  |  | Year = 1993} | 
| 1316 | chrisfen | 2575 |  | 
| 1317 | chrisfen | 2594 | @book{Frenkel96, | 
| 1318 |  |  | Address = {New York}, | 
| 1319 |  |  | Author = {D. Frenkel and B. Smit}, | 
| 1320 |  |  | Date-Modified = {2006-02-15 10:18:08 -0500}, | 
| 1321 |  |  | Publisher = {Academic Press}, | 
| 1322 |  |  | Title = {Understanding Molecular Simulation : From Algorithms to Applications}, | 
| 1323 |  |  | Year = 1996} | 
| 1324 | chrisfen | 2575 |  | 
| 1325 | chrisfen | 2594 | @article{Dullweber1997, | 
| 1326 |  |  | Author = {A. Dullweber and B. Leimkuhler and R. McLachlan}, | 
| 1327 |  |  | Journal = jcp, | 
| 1328 |  |  | Number = 15, | 
| 1329 |  |  | Pages = {5840-5851}, | 
| 1330 |  |  | Title = {Symplectic splitting methods for rigid body molecular dynamics}, | 
| 1331 |  |  | Volume = 107, | 
| 1332 |  |  | Year = 1997} | 
| 1333 | chrisfen | 2575 |  | 
| 1334 | chrisfen | 2594 | @article{Martin98, | 
| 1335 |  |  | Author = {M. Martin and J.~I. Siepmann}, | 
| 1336 |  |  | Date-Modified = {2006-02-15 10:15:05 -0500}, | 
| 1337 |  |  | Journal = jpcB, | 
| 1338 |  |  | Pages = {2569-2577}, | 
| 1339 |  |  | Title = {Transferable Potentials for Phase Equilibria. 1. United-Atom Description of n-Alkanes}, | 
| 1340 |  |  | Volume = 102, | 
| 1341 |  |  | Year = 1998} | 
| 1342 | chrisfen | 2575 |  | 
| 1343 | chrisfen | 2594 | @article{Marrink01a, | 
| 1344 |  |  | Author = {S.~J. Marrink and E. Lindahl and O. Edholm and A.~E. Mark}, | 
| 1345 |  |  | Date-Modified = {2006-02-15 10:28:09 -0500}, | 
| 1346 |  |  | Journal = jacs, | 
| 1347 |  |  | Pages = {8638-8639}, | 
| 1348 |  |  | Title = {Simulations of the Spontaneous Aggregation of Phospholipids into Bilayers}, | 
| 1349 |  |  | Volume = 123, | 
| 1350 |  |  | Year = 2001} | 
| 1351 | chrisfen | 2575 |  | 
| 1352 | chrisfen | 2594 | @article{Liu96b, | 
| 1353 |  |  | Author = {Y. Liu and T. Ichiye}, | 
| 1354 |  |  | Date-Modified = {2006-02-15 10:27:07 -0500}, | 
| 1355 |  |  | Journal = jpc, | 
| 1356 |  |  | Pages = {2723-2730}, | 
| 1357 |  |  | Title = {Soft sticky dipole potential for liquid water: a new model}, | 
| 1358 |  |  | Volume = 100, | 
| 1359 |  |  | Year = 1996} | 
| 1360 | chrisfen | 2575 |  | 
| 1361 | chrisfen | 2594 | @article{Liu96a, | 
| 1362 |  |  | Author = {Y. Liu and T. Ichiye}, | 
| 1363 |  |  | Date-Modified = {2006-02-15 10:27:01 -0500}, | 
| 1364 |  |  | Journal = {Chemical Physics Letters}, | 
| 1365 |  |  | Pages = {334-340}, | 
| 1366 |  |  | Title = {The static dielectric constant of the soft sticky dipole model of liquid water: $\mbox{Monte Carlo}$ simulation}, | 
| 1367 |  |  | Volume = 256, | 
| 1368 |  |  | Year = 1996} | 
| 1369 | chrisfen | 2575 |  | 
| 1370 | chrisfen | 2594 | @article{Chandra99, | 
| 1371 |  |  | Author = {A. Chandra and T. Ichiye}, | 
| 1372 |  |  | Date-Modified = {2006-02-15 10:09:36 -0500}, | 
| 1373 |  |  | Journal = {Journal of Chemical Physics}, | 
| 1374 |  |  | Number = 6, | 
| 1375 |  |  | Pages = {2701-2709}, | 
| 1376 |  |  | Title = {Dynamical properties of the soft sticky dipole model of water: Molecular dynamics simulation}, | 
| 1377 |  |  | Volume = 111, | 
| 1378 |  |  | Year = 1999} | 
| 1379 | chrisfen | 2575 |  | 
| 1380 | chrisfen | 2594 | @book{Allen87, | 
| 1381 |  |  | Address = {New York}, | 
| 1382 |  |  | Author = {M.~P. Allen and D.~J. Tildesley}, | 
| 1383 |  |  | Date-Modified = {2006-02-15 10:08:08 -0500}, | 
| 1384 |  |  | Publisher = {Oxford University Press}, | 
| 1385 |  |  | Title = {Computer Simulations of Liquids}, | 
| 1386 |  |  | Year = 1987} | 
| 1387 | chrisfen | 2575 |  | 
| 1388 | chrisfen | 2594 | @book{Leach01, | 
| 1389 |  |  | Address = {Harlow, England}, | 
| 1390 |  |  | Author = {A.~R. Leach}, | 
| 1391 |  |  | Date-Modified = {2006-02-15 10:25:19 -0500}, | 
| 1392 |  |  | Edition = {2nd}, | 
| 1393 |  |  | Publisher = {Pearson Educated Limited}, | 
| 1394 |  |  | Title = {Molecular Modeling: Principles and Applications}, | 
| 1395 |  |  | Year = 2001} | 
| 1396 | chrisfen | 2575 |  | 
| 1397 | chrisfen | 2594 | @article{Katsaras00, | 
| 1398 |  |  | Author = {J. Katsaras and S. Tristram-Nagle and Y. Liu and R.~L. Headrick and E. Fontes and P.~C. Mason and J.~F. Nagle}, | 
| 1399 |  |  | Date-Modified = {2006-02-15 10:21:52 -0500}, | 
| 1400 |  |  | Journal = {Physical Review E}, | 
| 1401 |  |  | Number = 5, | 
| 1402 |  |  | Pages = {5668-5677}, | 
| 1403 |  |  | Title = {Clarification of the ripple phase of lecithin bilayers using fully hydrated, aligned samples}, | 
| 1404 |  |  | Volume = 61, | 
| 1405 |  |  | Year = 2000} | 
| 1406 | chrisfen | 2575 |  | 
| 1407 | chrisfen | 2594 | @article{Sengupta00, | 
| 1408 |  |  | Author = {K. Sengupta and V.~A. Raghunathan and J. Katsaras}, | 
| 1409 |  |  | Date-Modified = {2006-02-15 10:32:00 -0500}, | 
| 1410 |  |  | Journal = {Europhysics Letters}, | 
| 1411 |  |  | Number = 6, | 
| 1412 |  |  | Pages = {722-728}, | 
| 1413 |  |  | Title = {Novel structural Features of the ripple phase of phospholipids}, | 
| 1414 |  |  | Volume = 49, | 
| 1415 |  |  | Year = 2000} | 
| 1416 | chrisfen | 2575 |  | 
| 1417 | chrisfen | 2594 | @article{Venable00, | 
| 1418 |  |  | Author = {R.~M. Venable and B.~R. Brooks and R.~W. Pastor}, | 
| 1419 |  |  | Date-Modified = {2006-02-15 10:11:19 -0500}, | 
| 1420 |  |  | Journal = jcp, | 
| 1421 |  |  | Number = 10, | 
| 1422 |  |  | Pages = {4822-4832}, | 
| 1423 |  |  | Title = {Molecular dynamics simulations of gel ($L_{\beta I}$) phase lipid bilayers in constant pressure and constant surface area ensembles}, | 
| 1424 |  |  | Volume = 112, | 
| 1425 |  |  | Year = 2000} | 
| 1426 | chrisfen | 2575 |  | 
| 1427 | chrisfen | 2594 | @article{Lindahl00, | 
| 1428 |  |  | Author = {E. Lindahl and O. Edholm}, | 
| 1429 |  |  | Date-Modified = {2006-02-15 10:26:05 -0500}, | 
| 1430 |  |  | Journal = {Biophysical Journal}, | 
| 1431 |  |  | Month = {July}, | 
| 1432 |  |  | Pages = {426-433}, | 
| 1433 |  |  | Title = {Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations}, | 
| 1434 |  |  | Volume = 79, | 
| 1435 |  |  | Year = 2000} | 
| 1436 | chrisfen | 2575 |  | 
| 1437 | chrisfen | 2594 | @article{Saiz02, | 
| 1438 |  |  | Author = {L. Saiz and M. Klein}, | 
| 1439 |  |  | Date-Modified = {2006-02-15 10:31:50 -0500}, | 
| 1440 |  |  | Journal = jcp, | 
| 1441 |  |  | Number = 7, | 
| 1442 |  |  | Pages = {3052-3057}, | 
| 1443 |  |  | Title = {Electrostatic interactions in a neutral model phospholipid bilayer by molecular dynamics simulations}, | 
| 1444 |  |  | Volume = 116, | 
| 1445 |  |  | Year = 2002} | 
| 1446 | chrisfen | 2575 |  | 
| 1447 | chrisfen | 2594 | @article{Stevens95, | 
| 1448 |  |  | Author = {M.~J. Stevens and G.~S. Grest}, | 
| 1449 |  |  | Date-Modified = {2006-02-15 10:10:47 -0500}, | 
| 1450 |  |  | Journal = {Physical Review E}, | 
| 1451 |  |  | Number = 6, | 
| 1452 |  |  | Pages = {5976-5983}, | 
| 1453 |  |  | Title = {Phase coexistence of a Stockmayer fluid in an aplied field}, | 
| 1454 |  |  | Volume = 51, | 
| 1455 |  |  | Year = 1995} | 
| 1456 | chrisfen | 2575 |  | 
| 1457 | chrisfen | 2594 | @article{Darden93, | 
| 1458 |  |  | Author = {T. Darden and D. York and L. Pedersen}, | 
| 1459 |  |  | Date-Modified = {2006-02-15 10:09:52 -0500}, | 
| 1460 |  |  | Journal = {Journal of Chemical Physics}, | 
| 1461 |  |  | Number = 12, | 
| 1462 |  |  | Pages = {10089-10092}, | 
| 1463 |  |  | Title = {Particle mesh Ewald: An $N \log N$ method for Ewald sums in large systems}, | 
| 1464 |  |  | Volume = 98, | 
| 1465 |  |  | Year = 1993} | 
| 1466 | chrisfen | 2575 |  | 
| 1467 | chrisfen | 2594 | @article{Goetz98, | 
| 1468 |  |  | Author = {R. Goetz and R. Lipowsky}, | 
| 1469 |  |  | Date-Modified = {2006-02-15 10:18:26 -0500}, | 
| 1470 |  |  | Journal = {Journal of Chemical Physics}, | 
| 1471 |  |  | Number = 17, | 
| 1472 |  |  | Pages = 7397, | 
| 1473 |  |  | Title = {Computer simulations of bilayer membranes: Self-assembly and interfacial tension}, | 
| 1474 |  |  | Volume = 108, | 
| 1475 |  |  | Year = 1998} | 
| 1476 | chrisfen | 2575 |  | 
| 1477 | chrisfen | 2594 | @article{Marrink01b, | 
| 1478 |  |  | Author = {S.~J. Marrink and A.~E. Mark}, | 
| 1479 |  |  | Date-Modified = {2006-02-15 10:28:01 -0500}, | 
| 1480 |  |  | Journal = {Journal of Physical Chemistry B}, | 
| 1481 |  |  | Pages = {6122-6127}, | 
| 1482 |  |  | Title = {Effect of undulations on surface tension in simulated bilayers}, | 
| 1483 |  |  | Volume = 105, | 
| 1484 |  |  | Year = 2001} | 
| 1485 | chrisfen | 2575 |  | 
| 1486 | chrisfen | 2594 | @article{Metropolis49, | 
| 1487 |  |  | Author = {N. Metropolis and S. Ulam}, | 
| 1488 |  |  | Date-Modified = {2006-02-15 10:29:03 -0500}, | 
| 1489 |  |  | Journal = {J. Am. Stat. Ass.}, | 
| 1490 |  |  | Pages = {335-341}, | 
| 1491 |  |  | Title = {The $\mbox{Monte Carlo}$ Method}, | 
| 1492 |  |  | Volume = 44, | 
| 1493 |  |  | Year = 1949} | 
| 1494 | chrisfen | 2575 |  | 
| 1495 | chrisfen | 2594 | @article{Metropolis53, | 
| 1496 |  |  | Author = {N. Metropolis and A.~W. Rosenbluth and M.~N. Rosenbluth and A.~H. Teller and E. Teller}, | 
| 1497 | chrisfen | 2609 | Date-Modified = {2006-03-09 10:44:24 -0500}, | 
| 1498 | chrisfen | 2594 | Journal = {J. Chem. Phys.}, | 
| 1499 | chrisfen | 2609 | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Metropolis_MCCalculations_53.pdf}, | 
| 1500 | chrisfen | 2594 | Pages = {1087-1092}, | 
| 1501 |  |  | Title = {Equation of State Calculations by Fast Computing Machines}, | 
| 1502 |  |  | Volume = 21, | 
| 1503 |  |  | Year = 1953} | 
| 1504 | chrisfen | 2575 |  | 
| 1505 | chrisfen | 2594 | @article{Born12, | 
| 1506 |  |  | Author = {M. Born and Th. Von~Karman}, | 
| 1507 |  |  | Date-Modified = {2006-02-15 10:08:50 -0500}, | 
| 1508 |  |  | Journal = {Physik Z.}, | 
| 1509 |  |  | Number = {297-309}, | 
| 1510 |  |  | Title = {Uber Schwingungen in Raumgittern}, | 
| 1511 |  |  | Volume = 13, | 
| 1512 |  |  | Year = 1912} | 
| 1513 | chrisfen | 2575 |  | 
| 1514 | chrisfen | 2594 | @book{Chandler87, | 
| 1515 |  |  | Author = {David Chandler}, | 
| 1516 |  |  | Date-Modified = {2006-02-15 10:09:20 -0500}, | 
| 1517 |  |  | Publisher = {Oxford University Press}, | 
| 1518 |  |  | Title = {Introduction to Modern Statistical Mechanics}, | 
| 1519 |  |  | Year = 1987} | 
| 1520 | chrisfen | 2575 |  | 
| 1521 | chrisfen | 2594 | @article{Pearlman95, | 
| 1522 |  |  | Author = {David~A. Pearlman and David~A. Case and James~W. Caldwell and Wilson~S. Ross and Thomas~E. Cheatham~III and Steve DeBolt and David Ferguson and George Seibel and Peter Kollman}, | 
| 1523 |  |  | Date-Modified = {2006-02-15 10:30:13 -0500}, | 
| 1524 |  |  | Journal = {Computer Physics Communications}, | 
| 1525 |  |  | Pages = {1-41}, | 
| 1526 |  |  | Title = {{\sc amber}, a package of computer programs for applying molecular mechanics. normal mode analysis, molecular dynamics, and free energy calculations to simulate the structural and energetic properties of molecules}, | 
| 1527 |  |  | Volume = 91, | 
| 1528 |  |  | Year = 1995} | 
| 1529 | chrisfen | 2575 |  | 
| 1530 | chrisfen | 2594 | @book{Goldstein01, | 
| 1531 |  |  | Address = {San Francisco}, | 
| 1532 |  |  | Author = {H. Goldstein and C. Poole and J. Safko}, | 
| 1533 |  |  | Edition = {3rd}, | 
| 1534 |  |  | Publisher = {Addison Wesley}, | 
| 1535 |  |  | Title = {Classical Mechanics}, | 
| 1536 |  |  | Year = 2001} | 
| 1537 | chrisfen | 2575 |  | 
| 1538 | chrisfen | 2594 | @article{Bratko85, | 
| 1539 |  |  | Author = {D. Bratko and L. Blum and A. Luzar}, | 
| 1540 |  |  | Journal = jcp, | 
| 1541 |  |  | Number = 12, | 
| 1542 |  |  | Pages = {6367-6370}, | 
| 1543 |  |  | Title = {A simple model for the intermolecular potential of water}, | 
| 1544 |  |  | Volume = 83, | 
| 1545 |  |  | Year = 1985} | 
| 1546 | chrisfen | 2575 |  | 
| 1547 | chrisfen | 2594 | @article{Bratko95, | 
| 1548 |  |  | Author = {L. Blum and F. Vericat and D. Bratko}, | 
| 1549 |  |  | Journal = jcp, | 
| 1550 |  |  | Number = 3, | 
| 1551 |  |  | Pages = {1461-1462}, | 
| 1552 |  |  | Title = {Towards an analytical model of water: The octupolar model}, | 
| 1553 |  |  | Volume = 102, | 
| 1554 |  |  | Year = 1995} | 
| 1555 | chrisfen | 2575 |  | 
| 1556 | chrisfen | 2594 | @article{Tan03, | 
| 1557 |  |  | Author = {M.-L. Tan and J.~T. Fischer and A. Chandra and B.~R. Brooks and T. Ichiye}, | 
| 1558 |  |  | Journal = cpl, | 
| 1559 |  |  | Pages = {646-652}, | 
| 1560 |  |  | Title = {A temperature of maximum density in soft sticky dipole water}, | 
| 1561 |  |  | Volume = 376, | 
| 1562 |  |  | Year = 2003} | 
| 1563 | chrisfen | 2575 |  | 
| 1564 | chrisfen | 2594 | @article{Soper86, | 
| 1565 |  |  | Author = {A.~K. Soper and M.~G. Phillips}, | 
| 1566 |  |  | Journal = cp, | 
| 1567 |  |  | Number = 1, | 
| 1568 |  |  | Pages = {47-60}, | 
| 1569 |  |  | Title = {A new determination of the structure of water at 298K}, | 
| 1570 |  |  | Volume = 107, | 
| 1571 |  |  | Year = 1986} | 
| 1572 | chrisfen | 2575 |  | 
| 1573 | chrisfen | 2594 | @article{Plimpton95, | 
| 1574 |  |  | Author = {S. Plimpton}, | 
| 1575 |  |  | Date-Modified = {2006-02-15 10:30:31 -0500}, | 
| 1576 |  |  | Journal = {J. Comp. Phys.}, | 
| 1577 |  |  | Pages = {1-19}, | 
| 1578 |  |  | Title = {Fast Parallel Algorithms for Short-Range Molecular Dymanics}, | 
| 1579 |  |  | Volume = 117, | 
| 1580 |  |  | Year = 1995} | 
| 1581 | chrisfen | 2575 |  | 
| 1582 | chrisfen | 2594 | @article{Tartaglino02, | 
| 1583 |  |  | Author = {U. Tartaglino and E. Tosatti and D. Passerone and F. Ercolessi}, | 
| 1584 |  |  | Date-Modified = {2006-02-15 10:34:04 -0500}, | 
| 1585 |  |  | Journal = prb, | 
| 1586 |  |  | Pages = 241406, | 
| 1587 |  |  | Title = {Bending strain-driven modification of surface resconstructions: Au(111)}, | 
| 1588 |  |  | Volume = 65, | 
| 1589 |  |  | Year = 2002} | 
| 1590 | chrisfen | 2575 |  | 
| 1591 | chrisfen | 2594 | @article{Ercolessi88, | 
| 1592 |  |  | Author = {F. Ercolessi and M. Parrinello and E. Tosatti}, | 
| 1593 |  |  | Journal = {Philosophical Magazine A}, | 
| 1594 |  |  | Pages = {213-226}, | 
| 1595 |  |  | Title = {Simulation of Gold in the Glue Model.}, | 
| 1596 |  |  | Volume = 58, | 
| 1597 |  |  | Year = 1988} | 
| 1598 | chrisfen | 2575 |  | 
| 1599 | chrisfen | 2594 | @article{Finnis84, | 
| 1600 |  |  | Author = {M.~W Finnis and J.~E. Sinclair}, | 
| 1601 |  |  | Journal = {Phil. Mag. A}, | 
| 1602 |  |  | Pages = {45-55}, | 
| 1603 |  |  | Title = {A Simple Empirical N-Body Potential for Transition-Metals}, | 
| 1604 |  |  | Volume = 50, | 
| 1605 |  |  | Year = 1984} | 
| 1606 | chrisfen | 2575 |  | 
| 1607 | chrisfen | 2594 | @article{Foiles86, | 
| 1608 |  |  | Author = {S.~M. Foiles and M.~I. Baskes and M.~S. Daw}, | 
| 1609 |  |  | Date-Modified = {2006-02-15 10:17:44 -0500}, | 
| 1610 |  |  | Journal = prb, | 
| 1611 |  |  | Number = 12, | 
| 1612 |  |  | Pages = 7983, | 
| 1613 |  |  | Title = {Embedded-atom-method functions for the fcc metals $\mbox{Cu, Ag, Au, Ni, Pd, Pt}$, and their alloys}, | 
| 1614 |  |  | Volume = 33, | 
| 1615 |  |  | Year = 1986} | 
| 1616 | chrisfen | 2575 |  | 
| 1617 | chrisfen | 2594 | @article{Daw93, | 
| 1618 |  |  | Author = {M.~S. Daw and S.~M. Foiles and M.~I. Baskes}, | 
| 1619 |  |  | Date-Modified = {2006-02-15 10:16:13 -0500}, | 
| 1620 |  |  | Journal = {Mat. Sci. Rep.}, | 
| 1621 |  |  | Pages = {251-310}, | 
| 1622 |  |  | Title = {The embededd-atom method}, | 
| 1623 |  |  | Volume = 9, | 
| 1624 |  |  | Year = 1993} | 
| 1625 | chrisfen | 2575 |  | 
| 1626 | chrisfen | 2594 | @article{Johnson89, | 
| 1627 |  |  | Author = {R.~A. Johnson}, | 
| 1628 |  |  | Date-Modified = {2006-02-15 10:21:36 -0500}, | 
| 1629 |  |  | Journal = prb, | 
| 1630 |  |  | Number = 17, | 
| 1631 |  |  | Pages = 12554, | 
| 1632 |  |  | Title = {Alloy models with the embedded-atom method}, | 
| 1633 |  |  | Volume = 39, | 
| 1634 |  |  | Year = 1989} | 
| 1635 | chrisfen | 2575 |  | 
| 1636 | chrisfen | 2594 | @article{Kol97, | 
| 1637 |  |  | Author = {A. Kol and B.~B. Laird and B.~J. Leimkuhler}, | 
| 1638 |  |  | Date-Modified = {2006-02-15 10:24:53 -0500}, | 
| 1639 |  |  | Journal = jcp, | 
| 1640 |  |  | Number = 7, | 
| 1641 |  |  | Pages = {2580-2588}, | 
| 1642 |  |  | Title = {A symplectic method for rigid-body molecular simulation}, | 
| 1643 |  |  | Volume = 107, | 
| 1644 |  |  | Year = 1997} | 
| 1645 | chrisfen | 2575 |  | 
| 1646 | chrisfen | 2594 | @article{Hoover85, | 
| 1647 |  |  | Author = {W.~G. Hoover}, | 
| 1648 |  |  | Date-Modified = {2006-02-15 10:21:18 -0500}, | 
| 1649 |  |  | Journal = pra, | 
| 1650 |  |  | Pages = 1695, | 
| 1651 |  |  | Title = {Canonical dynamics: Equilibrium phase-space distributions}, | 
| 1652 |  |  | Volume = 31, | 
| 1653 |  |  | Year = 1985} | 
| 1654 | chrisfen | 2575 |  | 
| 1655 | chrisfen | 2594 | @article{Roux91, | 
| 1656 |  |  | Author = {B. Roux and M. Karplus}, | 
| 1657 |  |  | Journal = jpc, | 
| 1658 |  |  | Number = 15, | 
| 1659 |  |  | Pages = {4856-4868}, | 
| 1660 |  |  | Title = {Ion transport in a Gramicidin-like channel: dynamics and mobility}, | 
| 1661 |  |  | Volume = 95, | 
| 1662 |  |  | Year = 1991} | 
| 1663 | chrisfen | 2575 |  | 
| 1664 | chrisfen | 2594 | @article{Marrink94, | 
| 1665 |  |  | Author = {S.~J Marrink and H.~J.~C. Berendsen}, | 
| 1666 |  |  | Journal = jpc, | 
| 1667 |  |  | Number = 15, | 
| 1668 |  |  | Pages = {4155-4168}, | 
| 1669 |  |  | Title = {Simulation of water transport through a lipid membrane}, | 
| 1670 |  |  | Volume = 98, | 
| 1671 |  |  | Year = 1994} | 
| 1672 | chrisfen | 2575 |  | 
| 1673 | chrisfen | 2594 | @article{Daw89, | 
| 1674 |  |  | Author = {Murray~S. Daw}, | 
| 1675 |  |  | Journal = {Physical Review B}, | 
| 1676 |  |  | Pages = {7441-7452}, | 
| 1677 |  |  | Title = {Model of metallic cohesion: The embedded-atom method}, | 
| 1678 |  |  | Volume = 39, | 
| 1679 |  |  | Year = 1989} | 
| 1680 | chrisfen | 2575 |  | 
| 1681 | chrisfen | 2594 | @inbook{Voter95b, | 
| 1682 |  |  | Author = {A.~F. Voter}, | 
| 1683 |  |  | Chapter = 4, | 
| 1684 |  |  | Date-Modified = {2006-02-15 10:35:07 -0500}, | 
| 1685 |  |  | Editor = {J.~H. Westbrook and R.~L. Fleischer}, | 
| 1686 |  |  | Pages = 77, | 
| 1687 |  |  | Publisher = {John Wiley and Sons Ltd}, | 
| 1688 |  |  | Title = {Intermetallic Compounds: Principles and Practice}, | 
| 1689 |  |  | Volume = 1, | 
| 1690 |  |  | Year = 1995} | 
| 1691 | chrisfen | 2575 |  | 
| 1692 | chrisfen | 2594 | @article{Marrink02, | 
| 1693 |  |  | Author = {S.~J. Marrink and D.~P. Teileman}, | 
| 1694 |  |  | Date-Modified = {2006-02-15 10:28:20 -0500}, | 
| 1695 |  |  | Journal = {Biophysical Journal}, | 
| 1696 |  |  | Pages = {2386-2392}, | 
| 1697 |  |  | Title = {Molecular Dynamics Simulation of Spontaneous Membrane Fusion during a Cubic-Hexagonal Phase Transition}, | 
| 1698 |  |  | Volume = 83, | 
| 1699 |  |  | Year = 2002} | 
| 1700 | chrisfen | 2575 |  | 
| 1701 | chrisfen | 2594 | @article{Sum03, | 
| 1702 |  |  | Author = {A.~K. Sum and J.~J. de~Pablo}, | 
| 1703 |  |  | Date-Modified = {2006-02-15 10:11:01 -0500}, | 
| 1704 |  |  | Journal = {Biophysical Journal}, | 
| 1705 |  |  | Pages = {3636-3645}, | 
| 1706 |  |  | Title = {Molecular Simulation Study on the influence of Dimethylsulfoxide on the structure of Phospholipid Bilayers}, | 
| 1707 |  |  | Volume = 85, | 
| 1708 |  |  | Year = 2003} | 
| 1709 | chrisfen | 2575 |  | 
| 1710 | chrisfen | 2594 | @article{Gomez03, | 
| 1711 |  |  | Author = {J.~D. Faraldo-Gomez and G.~R. Smith and M.~S.P. Sansom}, | 
| 1712 |  |  | Date-Modified = {2006-02-15 10:17:14 -0500}, | 
| 1713 |  |  | Journal = {Eur. Biophys. J.}, | 
| 1714 |  |  | Pages = {217-227}, | 
| 1715 |  |  | Title = {Setting up and optimization of membrane protein simulations}, | 
| 1716 |  |  | Volume = 31, | 
| 1717 |  |  | Year = 2002} | 
| 1718 | chrisfen | 2575 |  | 
| 1719 | chrisfen | 2594 | @article{Smondyrev99, | 
| 1720 |  |  | Author = {A.~M. Smondyrev and M.~L. Berkowitz}, | 
| 1721 |  |  | Date-Modified = {2006-02-15 10:10:29 -0500}, | 
| 1722 |  |  | Journal = {Biophysical Journal}, | 
| 1723 |  |  | Pages = {2472-2478}, | 
| 1724 |  |  | Title = {Molecular Dynamics Simulation of {\sc dppc} Bilayer in {\sc dmso}}, | 
| 1725 |  |  | Volume = 76, | 
| 1726 |  |  | Year = 1999} | 
| 1727 | chrisfen | 2575 |  | 
| 1728 | chrisfen | 2594 | @article{Nina02, | 
| 1729 |  |  | Author = {M. Nina and T. Simonson}, | 
| 1730 |  |  | Date-Modified = {2006-02-15 10:29:27 -0500}, | 
| 1731 |  |  | Journal = {J. Phys. Chem. B}, | 
| 1732 |  |  | Pages = {3696-3705}, | 
| 1733 |  |  | Title = {Molecular Dynamics of the $\text{tRNA}^{\text{Ala}}$ Acceptor Stem: Comparison between Continuum Reaction Field and Particle-Mesh Ewald Electrostatic Treatments}, | 
| 1734 |  |  | Volume = 106, | 
| 1735 |  |  | Year = 2002} | 
| 1736 | chrisfen | 2575 |  | 
| 1737 | chrisfen | 2594 | @article{Norberg00, | 
| 1738 |  |  | Author = {J. Norberg and L. Nilsson}, | 
| 1739 |  |  | Date-Modified = {2006-02-15 10:29:36 -0500}, | 
| 1740 |  |  | Journal = {Biophysical Journal}, | 
| 1741 |  |  | Pages = {1537-1553}, | 
| 1742 |  |  | Title = {On the truncation of Long-Range Electrostatic Interactions in {\sc dna}}, | 
| 1743 |  |  | Volume = 79, | 
| 1744 |  |  | Year = 2000} | 
| 1745 | chrisfen | 2575 |  | 
| 1746 | chrisfen | 2594 | @article{Patra03, | 
| 1747 |  |  | Author = {M. Patra and M. Karttunen and M.~T. Hyv\"{o}nen and E. Falk and P. Lindqvist and I. Vattulainen}, | 
| 1748 |  |  | Date-Modified = {2006-02-15 10:29:58 -0500}, | 
| 1749 |  |  | Journal = {Biophysical Journal}, | 
| 1750 |  |  | Pages = {3636-3645}, | 
| 1751 |  |  | Title = {Molecular Dynamics Simulations of Lipid Bilayers: Major Artifacts Due to Truncating Electrostatic Interactions}, | 
| 1752 |  |  | Volume = 84, | 
| 1753 |  |  | Year = 2003} | 
| 1754 | chrisfen | 2575 |  | 
| 1755 | chrisfen | 2594 | @article{Marrink04, | 
| 1756 |  |  | Author = {S.~J. Marrink and A.~H. de~Vries and A.~E. Mark}, | 
| 1757 |  |  | Date-Modified = {2006-02-15 10:28:28 -0500}, | 
| 1758 |  |  | Journal = {J. Phys. Chem. B}, | 
| 1759 |  |  | Pages = {750-760}, | 
| 1760 |  |  | Title = {Coarse Grained Model for Semiquantitative Lipid Simulations}, | 
| 1761 |  |  | Volume = 108, | 
| 1762 |  |  | Year = 2004} | 
| 1763 | chrisfen | 2575 |  | 
| 1764 | chrisfen | 2594 | @article{Andersen83, | 
| 1765 |  |  | Author = {H.~C. Andersen}, | 
| 1766 |  |  | Date-Modified = {2006-02-15 10:08:20 -0500}, | 
| 1767 |  |  | Journal = {Journal of Computational Physics}, | 
| 1768 |  |  | Pages = {24-34}, | 
| 1769 |  |  | Title = {{\sc rattle}: A Velocity Version of the Shake Algorithm for Molecular Dynamics Calculations}, | 
| 1770 |  |  | Volume = 52, | 
| 1771 |  |  | Year = 1983} | 
| 1772 | chrisfen | 2575 |  | 
| 1773 | chrisfen | 2594 | @article{Hura00, | 
| 1774 |  |  | Author = {G. Hura and J.~M. Sorenson and R.~M. Glaeser and T. Head-Gordon}, | 
| 1775 |  |  | Date-Modified = {2006-02-15 10:21:28 -0500}, | 
| 1776 |  |  | Journal = {J. Chem. Phys.}, | 
| 1777 |  |  | Pages = {9140-9148}, | 
| 1778 |  |  | Title = {A high-quality x-ray scattering experiment on liquid water at ambient conditions}, | 
| 1779 |  |  | Volume = 113, | 
| 1780 |  |  | Year = 2000} | 
| 1781 | chrisfen | 2575 |  | 
| 1782 | chrisfen | 2594 | @article{Ryckaert77, | 
| 1783 |  |  | Author = {J.~P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen}, | 
| 1784 |  |  | Date-Modified = {2006-02-15 10:31:44 -0500}, | 
| 1785 |  |  | Journal = {Journal of Computational Physics}, | 
| 1786 |  |  | Pages = {327-341}, | 
| 1787 |  |  | Title = {Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes}, | 
| 1788 |  |  | Volume = 23, | 
| 1789 |  |  | Year = 1977} | 
| 1790 | chrisfen | 2575 |  | 
| 1791 | chrisfen | 2594 | @inbook{Fowles99, | 
| 1792 |  |  | Author = {G.~R. Fowles and G.~L. Cassiday}, | 
| 1793 |  |  | Chapter = 10, | 
| 1794 |  |  | Date-Modified = {2006-02-15 10:18:00 -0500}, | 
| 1795 |  |  | Edition = {6th}, | 
| 1796 |  |  | Publisher = {Saunders College Publishing}, | 
| 1797 |  |  | Title = {Analytical Mechanics}, | 
| 1798 |  |  | Year = 1999} | 
| 1799 | chrisfen | 2575 |  | 
| 1800 | chrisfen | 2594 | @article{Petrache00, | 
| 1801 |  |  | Author = {H.~I. Petrache and S.~W. Dodd and M.~F. Brown}, | 
| 1802 |  |  | Date-Modified = {2006-02-15 10:30:24 -0500}, | 
| 1803 |  |  | Journal = {Biophysical Journal}, | 
| 1804 |  |  | Pages = {3172-3192}, | 
| 1805 |  |  | Title = {Area per Lipid and Acyl Length Distributions in Fluid Phosphatidylcholines Determined by $^2\text{H}$ {\sc nmr} Spectroscopy}, | 
| 1806 |  |  | Volume = 79, | 
| 1807 |  |  | Year = 2000} | 
| 1808 | chrisfen | 2575 |  | 
| 1809 | chrisfen | 2594 | @article{Egberts88, | 
| 1810 |  |  | Author = {E. Egberts and H.~J.~C. Berendsen}, | 
| 1811 |  |  | Date-Modified = {2006-02-15 10:16:43 -0500}, | 
| 1812 |  |  | Journal = {J. Chem. Phys.}, | 
| 1813 |  |  | Pages = {3718-3732}, | 
| 1814 |  |  | Title = {Molecular Dynamics Simulation of a smectic liquid crystal with atomic detail}, | 
| 1815 |  |  | Volume = 89, | 
| 1816 |  |  | Year = 1988} | 
| 1817 | chrisfen | 2575 |  | 
| 1818 | chrisfen | 2594 | @article{Holz00, | 
| 1819 |  |  | Author = {M. Holz and S.~R. Heil and A. Sacco}, | 
| 1820 |  |  | Journal = {Phys. Chem. Chem. Phys.}, | 
| 1821 |  |  | Pages = {4740-4742}, | 
| 1822 |  |  | Title = {Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate $^1${\sc h} {\sc nmr pfg} measurements}, | 
| 1823 |  |  | Volume = 2, | 
| 1824 |  |  | Year = 2000} | 
| 1825 | chrisfen | 2575 |  | 
| 1826 | chrisfen | 2594 | @incollection{Zannoni94, | 
| 1827 |  |  | Author = {C. Zannoni}, | 
| 1828 |  |  | Booktitle = {The Molecular Dynamics of Liquid Crstals}, | 
| 1829 |  |  | Chapter = 6, | 
| 1830 |  |  | Date-Modified = {2006-02-15 10:12:36 -0500}, | 
| 1831 |  |  | Editor = {G.~R. Luckhurst and C.~A. Veracini}, | 
| 1832 |  |  | Pages = {139-169}, | 
| 1833 |  |  | Publisher = {Kluwer Academic Publishers}, | 
| 1834 |  |  | Title = {An introduction to the molecular dynamics method and to orientational dynamics in liquid crystals}, | 
| 1835 |  |  | Year = 1994} | 
| 1836 | chrisfen | 2575 |  | 
| 1837 | chrisfen | 2594 | @article{Melchionna93, | 
| 1838 |  |  | Author = {S. Melchionna and G. Ciccotti and B.~L. Holian}, | 
| 1839 |  |  | Date-Modified = {2006-02-15 10:28:54 -0500}, | 
| 1840 |  |  | Journal = {Molecular Physics}, | 
| 1841 |  |  | Pages = {533-544}, | 
| 1842 |  |  | Title = {Hoover {\sc npt} dynamics for systems varying in shape and size}, | 
| 1843 |  |  | Volume = 78, | 
| 1844 |  |  | Year = 1993} | 
| 1845 | chrisfen | 2575 |  | 
| 1846 | chrisfen | 2594 | @article{Fennell04, | 
| 1847 |  |  | Author = {C.~J. Fennell and J.~D. Gezelter}, | 
| 1848 |  |  | Date-Modified = {2006-02-15 09:08:04 -0500}, | 
| 1849 |  |  | Journal = jcp, | 
| 1850 |  |  | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Fennell_TempSSDs_04.pdf}, | 
| 1851 |  |  | Number = 19, | 
| 1852 |  |  | Pages = {9175-9184}, | 
| 1853 |  |  | Title = {On the structural and transport properties of the soft sticky dipole(SSD) and related single point water models}, | 
| 1854 |  |  | Volume = 120, | 
| 1855 |  |  | Year = 2004} | 
| 1856 | chrisfen | 2575 |  | 
| 1857 | chrisfen | 2594 | @article{Klein01, | 
| 1858 |  |  | Author = {J.~C. Shelley andf M.~Y. Shelley and R.~C. Reeder and S. Bandyopadhyay and M.~L. Klein}, | 
| 1859 |  |  | Date-Modified = {2006-02-15 10:27:22 -0500}, | 
| 1860 |  |  | Journal = {J. Phys. Chem. B}, | 
| 1861 |  |  | Pages = {4464-4470}, | 
| 1862 |  |  | Title = {A Coarse Grain Model for Phospholipid Simulations}, | 
| 1863 |  |  | Volume = 105, | 
| 1864 |  |  | Year = 2001} | 
| 1865 | chrisfen | 2575 |  | 
| 1866 | chrisfen | 2594 | @article{Marrink03, | 
| 1867 |  |  | Author = {S.~J. Marrink and A.~E. Mark}, | 
| 1868 |  |  | Date-Modified = {2006-02-15 10:28:41 -0500}, | 
| 1869 |  |  | Journal = {J. Am. Chem. Soc.}, | 
| 1870 |  |  | Pages = {15233-15242}, | 
| 1871 |  |  | Title = {Molecular Dynaimcs Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles}, | 
| 1872 |  |  | Volume = 125, | 
| 1873 |  |  | Year = 2003} | 
| 1874 | chrisfen | 2575 |  | 
| 1875 | chrisfen | 2594 | @article{Fletcher64, | 
| 1876 |  |  | Author = {R. Fletcher and C.~M. Reeves}, | 
| 1877 |  |  | Date-Modified = {2006-02-15 10:17:34 -0500}, | 
| 1878 |  |  | Journal = {Comput. J.}, | 
| 1879 |  |  | Number = 2, | 
| 1880 |  |  | Pages = {149-154}, | 
| 1881 |  |  | Title = {Function minimization by conjugate gradients}, | 
| 1882 |  |  | Volume = 7, | 
| 1883 |  |  | Year = 1964} | 
| 1884 | chrisfen | 2575 |  | 
| 1885 | chrisfen | 2594 | @article{Polak69, | 
| 1886 |  |  | Author = {E. Polak and G. Ribiere}, | 
| 1887 |  |  | Date-Modified = {2006-02-15 10:14:00 -0500}, | 
| 1888 |  |  | Journal = {Rev. Fr. Inform. Rech. Oper.}, | 
| 1889 |  |  | Pages = {35-43}, | 
| 1890 |  |  | Title = {Note sur la convergence de methodes de directions conjugees}, | 
| 1891 |  |  | Volume = {16-R1}, | 
| 1892 |  |  | Year = 1969} | 
| 1893 | chrisfen | 2575 |  | 
| 1894 | chrisfen | 2594 | @article{Voter87, | 
| 1895 |  |  | Author = {A.~F. Voter and S.~P. Chen}, | 
| 1896 |  |  | Date-Modified = {2006-02-15 10:35:19 -0500}, | 
| 1897 | chrisfen | 2575 | Journal = {Mat. Res. Soc. Symp. Proc.}, | 
| 1898 |  |  | Pages = {175}, | 
| 1899 |  |  | Title = {Accurate Interatomic Potentials for Ni, Al, and Ni3Al}, | 
| 1900 |  |  | Volume = {82}, | 
| 1901 |  |  | Year = {1987}} | 
| 1902 |  |  |  | 
| 1903 | chrisfen | 2594 | @article{Hendrickson95, | 
| 1904 | chrisfen | 2575 | Author = {Bruce Hendrickson and Steve Plimpton}, | 
| 1905 | chrisfen | 2594 | Date-Modified = {2006-02-15 10:19:11 -0500}, | 
| 1906 | chrisfen | 2575 | Journal = {Journal of Parallel and Distributed Computing}, | 
| 1907 |  |  | Pages = {15-25}, | 
| 1908 |  |  | Title = {Parallel Many-body Simulations without All-to-All Communication}, | 
| 1909 |  |  | Volume = {27}, | 
| 1910 |  |  | Year = {1995}} | 
| 1911 |  |  |  | 
| 1912 | chrisfen | 2594 | @inproceedings{Paradyn93, | 
| 1913 |  |  | Address = {Pittsburgh, PA}, | 
| 1914 |  |  | Author = {S.~J. Plimpton and B.~A. Hendrickson}, | 
| 1915 |  |  | Booktitle = {Materials Theory and Modelling}, | 
| 1916 |  |  | Date-Modified = {2006-02-15 10:30:42 -0500}, | 
| 1917 |  |  | Editor = {J. Broughton and P. Bristowe and J. Newsam}, | 
| 1918 |  |  | Pages = 37, | 
| 1919 |  |  | Publisher = {Materials Research Society}, | 
| 1920 |  |  | Series = {MRS Proceedings}, | 
| 1921 |  |  | Title = {Parallel Molecular Dynamics With the Embedded Atom Method}, | 
| 1922 |  |  | Volume = 291, | 
| 1923 |  |  | Year = 1993} | 
| 1924 | chrisfen | 2575 |  | 
| 1925 | chrisfen | 2594 | @article{Voter95a, | 
| 1926 |  |  | Author = {A.~F. Voter}, | 
| 1927 |  |  | Date-Modified = {2006-02-15 10:35:27 -0500}, | 
| 1928 | chrisfen | 2575 | Journal = {Intermetallic Compounds: Principles and Practice}, | 
| 1929 |  |  | Pages = {77}, | 
| 1930 |  |  | Title = {The Embedded-Atom Method}, | 
| 1931 |  |  | Volume = {1}, | 
| 1932 |  |  | Year = {1995}} | 
| 1933 |  |  |  | 
| 1934 | chrisfen | 2594 | @article{Heller90, | 
| 1935 | chrisfen | 2575 | Author = {H. Heller and H. Grubmuller and K. Schulten}, | 
| 1936 | chrisfen | 2594 | Date-Modified = {2006-02-15 10:19:02 -0500}, | 
| 1937 | chrisfen | 2575 | Journal = {Molecular Simulation}, | 
| 1938 |  |  | Pages = {133}, | 
| 1939 |  |  | Title = {Molecular dynamics simulation on a parallel computer}, | 
| 1940 |  |  | Volume = {5}, | 
| 1941 |  |  | Year = {1990}} | 
| 1942 |  |  |  | 
| 1943 | chrisfen | 2594 | @book{Fox88, | 
| 1944 |  |  | Address = {Englewood Cliffs, NJ}, | 
| 1945 |  |  | Author = {G.~C. Fox and M.~A. Johnson and G.~A Lyzenga and S.~W. Otto and J.~K. Salmon and D.~W. Walker}, | 
| 1946 |  |  | Publisher = {Prentice-Hall}, | 
| 1947 |  |  | Title = {Solving Promblems on Concurrent Processors}, | 
| 1948 |  |  | Volume = {I}, | 
| 1949 |  |  | Year = 1988} | 
| 1950 | chrisfen | 2575 |  | 
| 1951 | chrisfen | 2594 | @article{Berendsen95, | 
| 1952 |  |  | Author = {H.~J.~C. Berendsen and D. van~der~Spoel and R. van~Drunen}, | 
| 1953 |  |  | Date-Modified = {2006-02-15 10:20:47 -0500}, | 
| 1954 |  |  | Journal = {Comp. Phys. Comm.}, | 
| 1955 |  |  | Pages = {43-56}, | 
| 1956 |  |  | Title = {GROMACS: A message-passing parallel molecular dynamics implementation}, | 
| 1957 |  |  | Volume = 91, | 
| 1958 |  |  | Year = 1995} | 
| 1959 | chrisfen | 2575 |  | 
| 1960 | chrisfen | 2594 | @article{Lindahl01, | 
| 1961 |  |  | Author = {E. Lindahl and B. Hess and D. van~der~Spoel}, | 
| 1962 |  |  | Date-Modified = {2006-02-15 10:25:51 -0500}, | 
| 1963 |  |  | Journal = {J. Mol. Mod.}, | 
| 1964 |  |  | Pages = {306-317}, | 
| 1965 |  |  | Title = {GROMACS 3.0: A package for molecular simulation and trajectory analysis}, | 
| 1966 |  |  | Volume = 7, | 
| 1967 |  |  | Year = 2001} | 
| 1968 | chrisfen | 2575 |  | 
| 1969 | chrisfen | 2594 | @article{Smith96, | 
| 1970 |  |  | Author = {W. Smith and T. Forester}, | 
| 1971 |  |  | Date-Modified = {2006-02-15 10:10:14 -0500}, | 
| 1972 |  |  | Journal = {J. Molec. Graphics.}, | 
| 1973 |  |  | Number = 3, | 
| 1974 |  |  | Pages = {136-141}, | 
| 1975 |  |  | Title = {DL_POLY_2.0: A general-purpose parallel molecular dynamics simulation package}, | 
| 1976 |  |  | Volume = 14, | 
| 1977 |  |  | Year = 1996} | 
| 1978 | chrisfen | 2575 |  | 
| 1979 | chrisfen | 2594 | @article{Ponder87, | 
| 1980 |  |  | Author = {J.~W. Ponder and F.~M. Richards}, | 
| 1981 |  |  | Date-Modified = {2006-02-15 10:13:45 -0500}, | 
| 1982 |  |  | Journal = {J. Comp. Chem.}, | 
| 1983 |  |  | Number = 7, | 
| 1984 |  |  | Pages = {1016-1024}, | 
| 1985 |  |  | Title = {AN EFFICIENT NEWTON-LIKE METHOD FOR MOLECULAR MECHANICS ENERGY MINIMIZATION OF LARGE MOLECULES}, | 
| 1986 |  |  | Volume = 8, | 
| 1987 |  |  | Year = 1987} | 
| 1988 | chrisfen | 2575 |  | 
| 1989 | chrisfen | 2594 | @article{Berendsen87, | 
| 1990 |  |  | Author = {H.~J.~C. Berendsen and J.~R. Grigera and T.~P. Straatsma}, | 
| 1991 |  |  | Journal = jpc, | 
| 1992 |  |  | Pages = {6269-6271}, | 
| 1993 |  |  | Title = {The Missing Term in Effective Pair Potentials}, | 
| 1994 |  |  | Volume = 91, | 
| 1995 |  |  | Year = 1987} | 
| 1996 | chrisfen | 2575 |  | 
| 1997 | chrisfen | 2594 | @incollection{Berendsen81, | 
| 1998 |  |  | Address = {Dordrecht}, | 
| 1999 |  |  | Author = {H.~J.~C. Berendsen and J.~P.~M. Postma and W.~F. {van~Gunsteren} and J. Hermans}, | 
| 2000 |  |  | Booktitle = {Intermolecular Forces}, | 
| 2001 |  |  | Editor = {B. Pullman}, | 
| 2002 |  |  | Pages = 331, | 
| 2003 |  |  | Publisher = {Reidel}, | 
| 2004 |  |  | Title = {Simple Point Charge Water}, | 
| 2005 |  |  | Year = 1981} | 
| 2006 | chrisfen | 2575 |  | 
| 2007 | chrisfen | 2594 | @article{Mahoney00, | 
| 2008 |  |  | Author = {M.~W. Mahoney and W.~L. Jorgensen}, | 
| 2009 |  |  | Journal = jcp, | 
| 2010 |  |  | Number = 20, | 
| 2011 |  |  | Pages = {8910-8922}, | 
| 2012 |  |  | Title = {A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions}, | 
| 2013 |  |  | Volume = 112, | 
| 2014 |  |  | Year = 2000} | 
| 2015 | chrisfen | 2575 |  | 
| 2016 | chrisfen | 2594 | @article{Meineke05, | 
| 2017 | chrisfen | 2601 | Author = {M.~A. Meineke and C.~F. {Vardeman II} and T. Lin and C.~J. Fennell and J.~D. Gezelter}, | 
| 2018 |  |  | Date-Modified = {2006-03-05 12:37:31 -0500}, | 
| 2019 | chrisfen | 2594 | Journal = {J. Comp. Chem.}, | 
| 2020 |  |  | Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Meineke_OOPSE_05.pdf}, | 
| 2021 |  |  | Pages = {252-271}, | 
| 2022 |  |  | Title = {OOPSE: An Open Source Object-Oriented Parallel Simulation Engine for Molecular Dynamics}, | 
| 2023 |  |  | Volume = 26, | 
| 2024 |  |  | Year = 2005} | 
| 2025 | chrisfen | 2575 |  | 
| 2026 | chrisfen | 2594 | @article{Baez95a, | 
| 2027 |  |  | Author = {L.~A. B\`{a}ez and P. Clancy}, | 
| 2028 |  |  | Journal = mp, | 
| 2029 |  |  | Number = 3, | 
| 2030 |  |  | Pages = {385-396}, | 
| 2031 |  |  | Title = {Calculation of free energy for molecular crystals by thermodynamic integration}, | 
| 2032 |  |  | Volume = 86, | 
| 2033 |  |  | Year = 1995} | 
| 2034 | chrisfen | 2575 |  | 
| 2035 | chrisfen | 2594 | @article{Baez95b, | 
| 2036 |  |  | Author = {L.~A. B\`{a}ez and P. Clancy}, | 
| 2037 |  |  | Journal = jcp, | 
| 2038 |  |  | Number = 22, | 
| 2039 |  |  | Pages = {9744-9755}, | 
| 2040 |  |  | Title = {Phase equilibria in extended simple point charge ice-water systems}, | 
| 2041 |  |  | Volume = 103, | 
| 2042 |  |  | Year = 1995} | 
| 2043 | chrisfen | 2575 |  | 
| 2044 | chrisfen | 2594 | @article{Davidson84, | 
| 2045 |  |  | Author = {E.~R. Davidson and K. Morokuma}, | 
| 2046 |  |  | Journal = jcp, | 
| 2047 |  |  | Number = 8, | 
| 2048 |  |  | Pages = {3741-3742}, | 
| 2049 |  |  | Title = {A proposed antiferroelectric structure for proton ordered ice Ih}, | 
| 2050 |  |  | Volume = 81, | 
| 2051 |  |  | Year = 1984} | 
| 2052 | chrisfen | 2575 |  | 
| 2053 | chrisfen | 2594 | @article{Sanz04, | 
| 2054 |  |  | Author = {E. Sanz and C. Vega and J.~L.~F. Abascal and L.~G. MacDowell}, | 
| 2055 |  |  | Journal = prl, | 
| 2056 |  |  | Number = 25, | 
| 2057 |  |  | Pages = 255701, | 
| 2058 |  |  | Title = {Phase Diagram of Water from Computer Simulation}, | 
| 2059 |  |  | Volume = 92, | 
| 2060 |  |  | Year = 2004} | 
| 2061 | chrisfen | 2575 |  | 
| 2062 | chrisfen | 2594 | @article{Onsager36, | 
| 2063 |  |  | Author = {L. Onsager}, | 
| 2064 |  |  | Journal = jacs, | 
| 2065 |  |  | Pages = {1486-1493}, | 
| 2066 |  |  | Title = {Electric Moments of Molecules in Liquids}, | 
| 2067 |  |  | Volume = 58, | 
| 2068 |  |  | Year = 1936} | 
| 2069 | chrisfen | 2575 |  | 
| 2070 | chrisfen | 2594 | @article{Matsumoto02, | 
| 2071 |  |  | Author = {M. Matsumoto and S. Saito and I. Ohimine}, | 
| 2072 |  |  | Journal = {Nature (London)}, | 
| 2073 |  |  | Pages = {409-413}, | 
| 2074 |  |  | Title = {Molecular dynamics simulation of the ice nucleation and growth process leading to water freezing}, | 
| 2075 |  |  | Volume = 416, | 
| 2076 |  |  | Year = 2002} | 
| 2077 | chrisfen | 2575 |  | 
| 2078 | chrisfen | 2594 | @article{Yamada02, | 
| 2079 |  |  | Author = {M. Yamada and S. Mossa and H.~E. Stanley and F. Sciortino}, | 
| 2080 |  |  | Journal = prl, | 
| 2081 |  |  | Number = 19, | 
| 2082 |  |  | Pages = 195701, | 
| 2083 |  |  | Title = {Interplay between Time-Temperature Transformation and the Liquid-Liquid Phase Transition in Water}, | 
| 2084 |  |  | Volume = 88, | 
| 2085 |  |  | Year = 2002} | 
| 2086 | chrisfen | 2575 |  | 
| 2087 | chrisfen | 2594 | @article{Wallqvist95, | 
| 2088 |  |  | Author = {A. Wallqvist and B.~J. Berne}, | 
| 2089 |  |  | Journal = jpc, | 
| 2090 |  |  | Pages = {2885-2892}, | 
| 2091 |  |  | Title = {Molecular Dynamics Study of the Dependence of Water Solvation Free Energy on Solute Curvature and Surface Area}, | 
| 2092 |  |  | Volume = 99, | 
| 2093 |  |  | Year = 1995} | 
| 2094 | chrisfen | 2575 |  | 
| 2095 | chrisfen | 2594 | @article{Vlot99, | 
| 2096 |  |  | Author = {M.~J. Vlot and J. Huinink and J.~P. van~der~Eerden}, | 
| 2097 |  |  | Journal = jcp, | 
| 2098 |  |  | Number = 1, | 
| 2099 |  |  | Pages = {55-61}, | 
| 2100 |  |  | Title = {Free energy calculations on systems of rigid molecules: An application to the TIP4P model of H$_2$O}, | 
| 2101 |  |  | Volume = 110, | 
| 2102 |  |  | Year = 1999} | 
| 2103 | chrisfen | 2575 |  | 
| 2104 | chrisfen | 2594 | @article{Gao00, | 
| 2105 |  |  | Author = {G.~T. Gao and X.~C. Zeng and H. Tanaka}, | 
| 2106 |  |  | Journal = jcp, | 
| 2107 |  |  | Number = 19, | 
| 2108 |  |  | Pages = {8534-8538}, | 
| 2109 |  |  | Title = {The melting temperature of proton-disordered hexagonal ice: A computer simulation of 4-site transferable intermolecular potential model of water}, | 
| 2110 |  |  | Volume = 112, | 
| 2111 |  |  | Year = 2000} | 
| 2112 | chrisfen | 2575 |  | 
| 2113 | chrisfen | 2594 | @article{Bizid87, | 
| 2114 |  |  | Author = {A. Bizid and L. Bosio and A. Defrain and M. Oumezzine}, | 
| 2115 |  |  | Journal = jcp, | 
| 2116 |  |  | Number = 4, | 
| 2117 |  |  | Pages = {2225-2230}, | 
| 2118 |  |  | Title = {Structure of high-density amorphous water. I. X-ray diffraction study}, | 
| 2119 |  |  | Volume = 87, | 
| 2120 |  |  | Year = 1987} | 
| 2121 | chrisfen | 2575 |  | 
| 2122 | chrisfen | 2594 | @article{Quintana92, | 
| 2123 |  |  | Author = {J. Quintana and A.~D.~J. Haymet}, | 
| 2124 |  |  | Journal = cpl, | 
| 2125 |  |  | Number = 3, | 
| 2126 |  |  | Pages = {273-277}, | 
| 2127 |  |  | Title = {The chemical potential of water: molecular dynamics computer simulation of the CF and SPC models}, | 
| 2128 |  |  | Volume = 189, | 
| 2129 |  |  | Year = 1992} | 
| 2130 | chrisfen | 2575 |  | 
| 2131 | chrisfen | 2594 | @article{Mezei92, | 
| 2132 |  |  | Author = {M. Mezei}, | 
| 2133 |  |  | Journal = {J. Comput. Chem.}, | 
| 2134 |  |  | Pages = 651, | 
| 2135 |  |  | Title = {Don't Remember}, | 
| 2136 |  |  | Volume = 13, | 
| 2137 |  |  | Year = 1992} | 
| 2138 | chrisfen | 2575 |  | 
| 2139 | chrisfen | 2594 | @article{Widom63, | 
| 2140 |  |  | Author = {B. Widom}, | 
| 2141 |  |  | Journal = jcp, | 
| 2142 |  |  | Pages = 2808, | 
| 2143 |  |  | Title = {Particle insertion}, | 
| 2144 |  |  | Volume = 39, | 
| 2145 |  |  | Year = 1963} | 
| 2146 | chrisfen | 2575 |  | 
| 2147 | chrisfen | 2594 | @article{Clancy94, | 
| 2148 |  |  | Author = {L.~A. B\'{a}ez and P. Clancy}, | 
| 2149 |  |  | Journal = jcp, | 
| 2150 |  |  | Number = 11, | 
| 2151 |  |  | Pages = {9837-9840}, | 
| 2152 |  |  | Title = {Existence of a density maximum in extended simple point charge water}, | 
| 2153 |  |  | Volume = 101, | 
| 2154 |  |  | Year = 1994} | 
| 2155 | chrisfen | 2575 |  | 
| 2156 | chrisfen | 2594 | @article{Jorgensen98b, | 
| 2157 |  |  | Author = {W.~L. Jorgensen and C. Jenson}, | 
| 2158 |  |  | Journal = jcc, | 
| 2159 |  |  | Number = 10, | 
| 2160 |  |  | Pages = {1179-1186}, | 
| 2161 |  |  | Title = {Temperature Dependence of TIP3P, SPC, and TIP4P Water from NPT Monte Carlo Simulations: Seeking Temperatures of Maximum Density}, | 
| 2162 |  |  | Volume = 19, | 
| 2163 |  |  | Year = 1998} | 
| 2164 | chrisfen | 2575 |  | 
| 2165 | chrisfen | 2594 | @article{Mahoney01, | 
| 2166 |  |  | Author = {M.~W. Mahoney and W.~L. Jorgensen}, | 
| 2167 |  |  | Journal = jcp, | 
| 2168 |  |  | Number = 1, | 
| 2169 |  |  | Pages = {363-366}, | 
| 2170 |  |  | Title = {Diffusion constant of the TIP5P model of liquid water}, | 
| 2171 |  |  | Volume = 114, | 
| 2172 |  |  | Year = 2001} | 
| 2173 | chrisfen | 2575 |  | 
| 2174 | chrisfen | 2594 | @article{Rahman75, | 
| 2175 |  |  | Author = {A. Rahman and F.~H. Stillinger and H.~L. Lemberg}, | 
| 2176 |  |  | Journal = jcp, | 
| 2177 |  |  | Number = 12, | 
| 2178 |  |  | Pages = {5223-5230}, | 
| 2179 |  |  | Title = {Study of a central force model for liquid water by molecular dynamics}, | 
| 2180 |  |  | Volume = 63, | 
| 2181 |  |  | Year = 1975} | 
| 2182 | chrisfen | 2575 |  | 
| 2183 | chrisfen | 2594 | @article{Spoel98, | 
| 2184 | chrisfen | 2601 | Author = {D. {van der Spoel} and P.~J. {van Maaren} and H.~J.~C. Berendsen}, | 
| 2185 |  |  | Date-Modified = {2006-03-05 12:38:54 -0500}, | 
| 2186 | chrisfen | 2594 | Journal = jcp, | 
| 2187 |  |  | Number = 24, | 
| 2188 |  |  | Pages = {10220-10230}, | 
| 2189 |  |  | Title = {A systematic study of water models for molecular simulation: Derivation of water models optimized for use with a reaction field}, | 
| 2190 |  |  | Volume = 108, | 
| 2191 |  |  | Year = 1998} | 
| 2192 | chrisfen | 2575 |  | 
| 2193 | chrisfen | 2594 | @article{Gallagher03, | 
| 2194 |  |  | Author = {K.~R. Gallagher and K.~A. Sharp}, | 
| 2195 |  |  | Journal = jacs, | 
| 2196 |  |  | Pages = 9853, | 
| 2197 |  |  | Title = {A New Angle on Heat Capacity Changes in Hydrophobic Solvation}, | 
| 2198 |  |  | Volume = 125, | 
| 2199 |  |  | Year = 2003} | 
| 2200 | chrisfen | 2575 |  | 
| 2201 | chrisfen | 2594 | @article{Frenkel84, | 
| 2202 |  |  | Author = {D. Frenkel and A.~J.~C. Ladd}, | 
| 2203 |  |  | Journal = jcp, | 
| 2204 |  |  | Number = 7, | 
| 2205 |  |  | Pages = {3188-3193}, | 
| 2206 |  |  | Title = {New Monte Carlo method to compute the free energy of arbitrary solids. Application to the fcc and hcp phases of hard spheres}, | 
| 2207 |  |  | Volume = 81, | 
| 2208 |  |  | Year = 1984} | 
| 2209 | chrisfen | 2575 |  | 
| 2210 | chrisfen | 2594 | @article{Hermens88, | 
| 2211 |  |  | Author = {J. Hermans and A. Pathiaseril and A. Anderson}, | 
| 2212 |  |  | Journal = jacs, | 
| 2213 |  |  | Pages = {5982-5986}, | 
| 2214 |  |  | Title = {Excess Free Energy of Liquids from Molecular Dynamics Simulations. Application to Water Models}, | 
| 2215 |  |  | Volume = 110, | 
| 2216 |  |  | Year = 1988} | 
| 2217 | chrisfen | 2575 |  | 
| 2218 | chrisfen | 2594 | @article{Meijer90, | 
| 2219 |  |  | Author = {E.~J. Meijer and D. Frenkel and R.~A. LeSar and A.~J.~C. Ladd}, | 
| 2220 |  |  | Journal = jcp, | 
| 2221 |  |  | Number = 12, | 
| 2222 |  |  | Pages = {7570-7575}, | 
| 2223 |  |  | Title = {Location of melting point at 300 K of nitrogen by Monte Carlo simulation}, | 
| 2224 |  |  | Volume = 92, | 
| 2225 |  |  | Year = 1990} | 
| 2226 | chrisfen | 2575 |  | 
| 2227 | chrisfen | 2594 | @article{Li96, | 
| 2228 |  |  | Author = {H. Li and R. Helling and C. Tang and N. Wingreen}, | 
| 2229 |  |  | Journal = {Science}, | 
| 2230 |  |  | Pages = {666-669}, | 
| 2231 |  |  | Title = {Emergence of Preferred Structures in a Simple Model of Protein Folding}, | 
| 2232 |  |  | Volume = 273, | 
| 2233 |  |  | Year = 1996} | 
| 2234 | chrisfen | 2575 |  | 
| 2235 | chrisfen | 2594 | @article{Stillinger74, | 
| 2236 |  |  | Author = {F.~H. Stillinger and A. Rahman}, | 
| 2237 |  |  | Journal = jcp, | 
| 2238 |  |  | Number = 4, | 
| 2239 |  |  | Pages = {1545-1557}, | 
| 2240 |  |  | Title = {Improved simulation of liquid water by molecular dynamics}, | 
| 2241 |  |  | Volume = 60, | 
| 2242 |  |  | Year = 1974} | 
| 2243 | chrisfen | 2575 |  | 
| 2244 | chrisfen | 2594 | @article{Caldwell95, | 
| 2245 |  |  | Author = {J.~W. Caldwell and P.~A. Kollman}, | 
| 2246 |  |  | Journal = jpc, | 
| 2247 |  |  | Number = 16, | 
| 2248 |  |  | Pages = {6208-6219}, | 
| 2249 |  |  | Title = {Structure and Properties of Neat Liquids Using Nonadditive Molecular Dynamics: Water, Methanol, and $N$-Methylacetamide}, | 
| 2250 |  |  | Volume = 99, | 
| 2251 |  |  | Year = 1995} | 
| 2252 | chrisfen | 2575 |  | 
| 2253 | chrisfen | 2594 | @article{Urbic00, | 
| 2254 |  |  | Author = {T. Urbi\v{c} and V. Vlachy and Y.~V. Kalyuzhnyi and N.~T. Southall and K.~A. Dill}, | 
| 2255 |  |  | Date-Modified = {2006-02-15 10:34:30 -0500}, | 
| 2256 |  |  | Journal = jcp, | 
| 2257 |  |  | Number = 6, | 
| 2258 |  |  | Pages = {2843-2848}, | 
| 2259 |  |  | Title = {A two-dimensional model of water: Therory and computer simulations}, | 
| 2260 |  |  | Volume = 112, | 
| 2261 |  |  | Year = 2000} | 
| 2262 | chrisfen | 2575 |  | 
| 2263 | chrisfen | 2594 | @article{Yang04, | 
| 2264 |  |  | Author = {Jianjun Yang and Sheng Meng and L.~F. Xu and E.~G. Wang}, | 
| 2265 |  |  | Journal = prl, | 
| 2266 |  |  | Number = 14, | 
| 2267 |  |  | Pages = 146102, | 
| 2268 |  |  | Title = {Ice Tessellation on a Hydroxylated Silica Surface}, | 
| 2269 |  |  | Volume = 92, | 
| 2270 |  |  | Year = 2004} |