trunk/electrostaticMethodsPaper/electrostaticMethods.bbl

\begin{thebibliography}{10}

\bibitem{Roux99}
B.~Roux and T.~Simonson, {\em Biophys. Chem.\/} {\bf 78}, 1 (1999).

\bibitem{Sagui99}
C.~Sagui and T.~A. Darden, {\em Annu. Rev. Biophys. Biomol. Struct.\/} {\bf
  28}, 155 (1999).

\bibitem{Tobias01}
D.~J. Tobias, {\em Curr. Opin. Struct. Biol.\/} {\bf 11}, 253 (2001).

\bibitem{Born20}
M.~Born, {\em Z. Physik\/} {\bf 1}, 45 (1920).

\bibitem{Grossfield00}
A.~Grossfield, J.~Sachs, and T.~B. Woolf, {\em Proteins\/} {\bf 41}, 211
  (2000).

\bibitem{Ewald21}
P.~P. Ewald, {\em Ann. Physik\/} {\bf 64}, 253 (1921).

\bibitem{Steinbach94}
P.~J. Steinbach and B.~R. Brooks, {\em J. Comput. Chem.\/} {\bf 15}, 667
  (1994).

\bibitem{Onsager36}
L.~Onsager, {\em J. Am. Chem. Soc.\/} {\bf 58}, 1486 (1936).

\bibitem{Rokhlin85}
V.~Rokhlin, {\em J. Comput. Phys.\/} {\bf 60}, 187 (September 1985).

\bibitem{Wolf99}
D.~Wolf, P.~Keblinski, S.~R. Phillpot, and J.~Eggebrecht, {\em J. Chem.
  Phys.\/} {\bf 110}, 8255 (1999).

\bibitem{Essmann99}
U.~Essmann and M.~L. Berkowitz, {\em Biophys. J.\/} {\bf 76}, 2081 (1999).

\bibitem{deLeeuw80}
S.~W. {de Leeuw}, J.~W. Perram, and E.~R. Smith, {\em Proc. R. Soc. London Ser.
  A\/} {\bf 373}, 27 (1980).

\bibitem{Allen87}
M.~P. Allen and D.~J. Tildesley, {\em Computer Simulations of Liquids\/}
  (Oxford University Press, New York, 1987).

\bibitem{Brush66}
S.~G. Brush, H.~L. Sahlin, and E.~Teller, {\em J. Chem. Phys.\/} {\bf 45}, 2102
  (September 1966).

\bibitem{Woodcock71}
L.~V. Woodcock and K.~Singer, {\em Trans. Faraday Soc.\/} {\bf 67}, 12 (1971).

\bibitem{Smith81}
E.~R. Smith, {\em Proc. R. Soc. London Ser. A\/} {\bf 375}, 475 (1981).

\bibitem{Karasawa89}
N.~Karasawa and W.~A. {Goddard III}, {\em J. Phys. Chem.\/} {\bf 93}, 7320
  (1989).

\bibitem{Kolafa92}
J.~Kolafa and J.~W. Perram, {\em Mol. Simul.\/} {\bf 9}, 351 (1992).

\bibitem{Perram88}
J.~W. Perram, H.~G. Petersen, and S.~W. {de Leeuw}, {\em Mol. Phys.\/} {\bf
  65}, 875 (1988).

\bibitem{Hockney81}
R.~W. Hockney and J.~W. Eastwood, {\em Computer Simulation Using Particles\/}
  (McGraw-Hill, New York, 1981).

\bibitem{Shimada93}
J.~Shimada, H.~Kaneko, and T.~Takada, {\em J. Comp. Chem.\/} {\bf 14}, 867
  (1993).

\bibitem{Luty94}
B.~A. Luty, M.~E. Davis, I.~G. Tironi, and W.~F. {van~Gunsteren}, {\em Mol.
  Simul.\/} {\bf 14}, 11 (1994).

\bibitem{Luty95}
B.~A. Luty, I.~G. Tironi, and W.~F. {van~Gunsteren}, {\em J. Chem. Phys.\/}
  {\bf 103}, 3014 (1995).

\bibitem{Darden93}
T.~Darden, D.~York, and L.~Pedersen, {\em J. Chem. Phys.\/} {\bf 98}, 10089
  (1993).

\bibitem{Essmann95}
U.~Essmann, L.~Perera, M.~L. Berkowitz, T.~Darden, H.~Lee, and L.~G. Pedersen,
  {\em J. Chem. Phys.\/} {\bf 103}, 8577 (1995).

\bibitem{Parry75}
D.~E. Parry, {\em Surf. Sci.\/} {\bf 49}, 433 (1975).

\bibitem{Parry76}
D.~E. Parry, {\em Surf. Sci.\/} {\bf 54}, 195 (1976).

\bibitem{Heyes77}
D.~M. Heyes, M.~Barber, and J.~H.~R. Clarke, {\em J. Chem. Soc., Faraday Trans.
  II\/} {\bf 73}, 1485 (1977).

\bibitem{deLeeuw79}
S.~W. {de Leeuw} and J.~W. Perram, {\em Mol. Phys.\/} {\bf 37}, 1313 (1979).

\bibitem{Rhee89}
Y.-J. Rhee, J.~W. Halley, J.~Hautman, and A.~Rahman, {\em Phys. Rev. B\/} {\bf
  40}, 36 (1989).

\bibitem{Spohr97}
E.~Spohr, {\em J. Chem. Phys.\/} {\bf 107}, 6342 (1997).

\bibitem{Yeh99}
I.-C. Yeh and M.~L. Berkowitz, {\em J. Chem. Phys.\/} {\bf 111}, 3155 (1999).

\bibitem{Kawata01}
M.~Kawata and M.~Mikami, {\em Chem. Phys. Lett.\/} {\bf 340}, 157 (2001).

\bibitem{Arnold02}
A.~Arnold, J.~{de Joannis}, and C.~Holm, {\em J. Chem. Phys.\/} {\bf 117}, 2496
  (2002).

\bibitem{deJoannis02}
J.~{de Joannis}, A.~Arnold, and C.~Holm, {\em J. Chem. Phys.\/} {\bf 117}, 2503
  (2002).

\bibitem{Brodka04}
A.~Br\'{o}dka, {\em Chem. Phys. Lett.\/} {\bf 400}, 62 (2004).

\bibitem{Roberts94}
J.~E. Roberts and J.~Schnitker, {\em J. Chem. Phys.\/} {\bf 101}, 5024 (1994).

\bibitem{Roberts95}
J.~E. Roberts and J.~Schnitker, {\em J. Phys. Chem.\/} {\bf 99}, 1322 (1995).

\bibitem{Luty96}
B.~A. Luty and W.~F. {van~Gunsteren}, {\em J. Phys. Chem.\/} {\bf 100}, 2581
  (1996).

\bibitem{Hunenberger99a}
P.~H. H\"{u}nenberger and J.~A. McCammon, {\em J. Chem. Phys.\/} {\bf 110},
  1856 (1999).

\bibitem{Hunenberger99b}
P.~H. H\"{u}nenberger and J.~A. McCammon, {\em Biophys. Chem.\/} {\bf 78}, 69
  (1999).

\bibitem{Weber00}
W.~Weber, P.~H. H\"{u}nenberger, and J.~A. McCammon, {\em J. Phys. Chem. B\/}
  {\bf 104}, 3668 (2000).

\bibitem{Zahn02}
D.~Zahn, B.~Schilling, and S.~M. Kast, {\em J. Phys. Chem. B\/} {\bf 106},
  10725 (2002).

\bibitem{Jones56}
R.~E. Jones and D.~H. Templeton, {\em J. Chem. Phys.\/} {\bf 25}, 1062 (1956).

\bibitem{Heyes81}
D.~M. Heyes, {\em J. Chem. Phys.\/} {\bf 74}, 1924 (1981).

\bibitem{Rahman71}
A.~Rahman and F.~H. Stillinger, {\em J. Chem. Phys.\/} {\bf 55}, 3336 (October
  1971).

\bibitem{Adams79}
D.~J. Adams, E.~M. Adams, and G.~J. Hills, {\em Mol. Phys.\/} {\bf 38}, 387
  (1979).

\bibitem{Andrea83}
T.~A. Andrea, W.~C. Swope, and H.~C. Andersen, {\em J. Chem. Phys.\/} {\bf 79},
  4576 (1983).

\bibitem{Barker73}
J.~A. Barker and R.~O. Watts, {\em Mol. Phys.\/} {\bf 26}, 789 (1973).

\bibitem{Metropolis53}
N.~Metropolis, A.~W. Rosenbluth, M.~N. Rosenbluth, A.~H. Teller, and E.~Teller,
  {\em J. Chem. Phys.\/} {\bf 21}, 1087 (1953).

\bibitem{Berendsen87}
H.~J.~C. Berendsen, J.~R. Grigera, and T.~P. Straatsma, {\em J. Phys. Chem.\/}
  {\bf 91}, 6269 (1987).

\bibitem{Meineke05}
M.~A. Meineke, C.~F. {Vardeman II}, T.~Lin, C.~J. Fennell, and J.~D. Gezelter,
  {\em J. Comp. Chem.\/} {\bf 26}, 252 (2005).

\bibitem{Ponder87}
J.~W. Ponder and F.~M. Richards, {\em J. Comp. Chem.\/} {\bf 8}, 1016 (1987).

\bibitem{Leach01}
A.~R. Leach, {\em Molecular Modeling: Principles and Applications\/} (Pearson
  Educated Limited, Harlow, England, 2001), second edition.

\bibitem{Kast03}
S.~M. Kast, K.~F. Schmidt, and B.~Schilling, {\em Chem. Phys. Lett.\/} {\bf
  367}, 398 (2003).

\bibitem{EPAPSdeposit}
See EPAPS Document No. \_\_\_\_\_\_\_\_\_\_\_\_\_\_ for the supporting
information. This document may be retrieved via the EPAPS homepage
({http://www.aip.org/pubservs/epaps.html}) or from {ftp.aip.org} in
the directory /epaps/. See the EPAPS homepage for more information.

\end{thebibliography}
Revision:	2743
Committed:	Wed Apr 26 17:42:08 2006 UTC (19 years, 6 months ago) by chrisfen
File size:	6230 byte(s)
Log Message:	plugging EPAPS citation into .bbl
#	User	Rev	Content
1	chrisfen	2743	\begin{thebibliography}{10}
2
3			\bibitem{Roux99}
4			B.~Roux and T.~Simonson, {\em Biophys. Chem.\/} {\bf 78}, 1 (1999).
5
6			\bibitem{Sagui99}
7			C.~Sagui and T.~A. Darden, {\em Annu. Rev. Biophys. Biomol. Struct.\/} {\bf
8			28}, 155 (1999).
9
10			\bibitem{Tobias01}
11			D.~J. Tobias, {\em Curr. Opin. Struct. Biol.\/} {\bf 11}, 253 (2001).
12
13			\bibitem{Born20}
14			M.~Born, {\em Z. Physik\/} {\bf 1}, 45 (1920).
15
16			\bibitem{Grossfield00}
17			A.~Grossfield, J.~Sachs, and T.~B. Woolf, {\em Proteins\/} {\bf 41}, 211
18			(2000).
19
20			\bibitem{Ewald21}
21			P.~P. Ewald, {\em Ann. Physik\/} {\bf 64}, 253 (1921).
22
23			\bibitem{Steinbach94}
24			P.~J. Steinbach and B.~R. Brooks, {\em J. Comput. Chem.\/} {\bf 15}, 667
25			(1994).
26
27			\bibitem{Onsager36}
28			L.~Onsager, {\em J. Am. Chem. Soc.\/} {\bf 58}, 1486 (1936).
29
30			\bibitem{Rokhlin85}
31			V.~Rokhlin, {\em J. Comput. Phys.\/} {\bf 60}, 187 (September 1985).
32
33			\bibitem{Wolf99}
34			D.~Wolf, P.~Keblinski, S.~R. Phillpot, and J.~Eggebrecht, {\em J. Chem.
35			Phys.\/} {\bf 110}, 8255 (1999).
36
37			\bibitem{Essmann99}
38			U.~Essmann and M.~L. Berkowitz, {\em Biophys. J.\/} {\bf 76}, 2081 (1999).
39
40			\bibitem{deLeeuw80}
41			S.~W. {de Leeuw}, J.~W. Perram, and E.~R. Smith, {\em Proc. R. Soc. London Ser.
42			A\/} {\bf 373}, 27 (1980).
43
44			\bibitem{Allen87}
45			M.~P. Allen and D.~J. Tildesley, {\em Computer Simulations of Liquids\/}
46			(Oxford University Press, New York, 1987).
47
48			\bibitem{Brush66}
49			S.~G. Brush, H.~L. Sahlin, and E.~Teller, {\em J. Chem. Phys.\/} {\bf 45}, 2102
50			(September 1966).
51
52			\bibitem{Woodcock71}
53			L.~V. Woodcock and K.~Singer, {\em Trans. Faraday Soc.\/} {\bf 67}, 12 (1971).
54
55			\bibitem{Smith81}
56			E.~R. Smith, {\em Proc. R. Soc. London Ser. A\/} {\bf 375}, 475 (1981).
57
58			\bibitem{Karasawa89}
59			N.~Karasawa and W.~A. {Goddard III}, {\em J. Phys. Chem.\/} {\bf 93}, 7320
60			(1989).
61
62			\bibitem{Kolafa92}
63			J.~Kolafa and J.~W. Perram, {\em Mol. Simul.\/} {\bf 9}, 351 (1992).
64
65			\bibitem{Perram88}
66			J.~W. Perram, H.~G. Petersen, and S.~W. {de Leeuw}, {\em Mol. Phys.\/} {\bf
67			65}, 875 (1988).
68
69			\bibitem{Hockney81}
70			R.~W. Hockney and J.~W. Eastwood, {\em Computer Simulation Using Particles\/}
71			(McGraw-Hill, New York, 1981).
72
73			\bibitem{Shimada93}
74			J.~Shimada, H.~Kaneko, and T.~Takada, {\em J. Comp. Chem.\/} {\bf 14}, 867
75			(1993).
76
77			\bibitem{Luty94}
78			B.~A. Luty, M.~E. Davis, I.~G. Tironi, and W.~F. {van~Gunsteren}, {\em Mol.
79			Simul.\/} {\bf 14}, 11 (1994).
80
81			\bibitem{Luty95}
82			B.~A. Luty, I.~G. Tironi, and W.~F. {van~Gunsteren}, {\em J. Chem. Phys.\/}
83			{\bf 103}, 3014 (1995).
84
85			\bibitem{Darden93}
86			T.~Darden, D.~York, and L.~Pedersen, {\em J. Chem. Phys.\/} {\bf 98}, 10089
87			(1993).
88
89			\bibitem{Essmann95}
90			U.~Essmann, L.~Perera, M.~L. Berkowitz, T.~Darden, H.~Lee, and L.~G. Pedersen,
91			{\em J. Chem. Phys.\/} {\bf 103}, 8577 (1995).
92
93			\bibitem{Parry75}
94			D.~E. Parry, {\em Surf. Sci.\/} {\bf 49}, 433 (1975).
95
96			\bibitem{Parry76}
97			D.~E. Parry, {\em Surf. Sci.\/} {\bf 54}, 195 (1976).
98
99			\bibitem{Heyes77}
100			D.~M. Heyes, M.~Barber, and J.~H.~R. Clarke, {\em J. Chem. Soc., Faraday Trans.
101			II\/} {\bf 73}, 1485 (1977).
102
103			\bibitem{deLeeuw79}
104			S.~W. {de Leeuw} and J.~W. Perram, {\em Mol. Phys.\/} {\bf 37}, 1313 (1979).
105
106			\bibitem{Rhee89}
107			Y.-J. Rhee, J.~W. Halley, J.~Hautman, and A.~Rahman, {\em Phys. Rev. B\/} {\bf
108			40}, 36 (1989).
109
110			\bibitem{Spohr97}
111			E.~Spohr, {\em J. Chem. Phys.\/} {\bf 107}, 6342 (1997).
112
113			\bibitem{Yeh99}
114			I.-C. Yeh and M.~L. Berkowitz, {\em J. Chem. Phys.\/} {\bf 111}, 3155 (1999).
115
116			\bibitem{Kawata01}
117			M.~Kawata and M.~Mikami, {\em Chem. Phys. Lett.\/} {\bf 340}, 157 (2001).
118
119			\bibitem{Arnold02}
120			A.~Arnold, J.~{de Joannis}, and C.~Holm, {\em J. Chem. Phys.\/} {\bf 117}, 2496
121			(2002).
122
123			\bibitem{deJoannis02}
124			J.~{de Joannis}, A.~Arnold, and C.~Holm, {\em J. Chem. Phys.\/} {\bf 117}, 2503
125			(2002).
126
127			\bibitem{Brodka04}
128			A.~Br\'{o}dka, {\em Chem. Phys. Lett.\/} {\bf 400}, 62 (2004).
129
130			\bibitem{Roberts94}
131			J.~E. Roberts and J.~Schnitker, {\em J. Chem. Phys.\/} {\bf 101}, 5024 (1994).
132
133			\bibitem{Roberts95}
134			J.~E. Roberts and J.~Schnitker, {\em J. Phys. Chem.\/} {\bf 99}, 1322 (1995).
135
136			\bibitem{Luty96}
137			B.~A. Luty and W.~F. {van~Gunsteren}, {\em J. Phys. Chem.\/} {\bf 100}, 2581
138			(1996).
139
140			\bibitem{Hunenberger99a}
141			P.~H. H\"{u}nenberger and J.~A. McCammon, {\em J. Chem. Phys.\/} {\bf 110},
142			1856 (1999).
143
144			\bibitem{Hunenberger99b}
145			P.~H. H\"{u}nenberger and J.~A. McCammon, {\em Biophys. Chem.\/} {\bf 78}, 69
146			(1999).
147
148			\bibitem{Weber00}
149			W.~Weber, P.~H. H\"{u}nenberger, and J.~A. McCammon, {\em J. Phys. Chem. B\/}
150			{\bf 104}, 3668 (2000).
151
152			\bibitem{Zahn02}
153			D.~Zahn, B.~Schilling, and S.~M. Kast, {\em J. Phys. Chem. B\/} {\bf 106},
154			10725 (2002).
155
156			\bibitem{Jones56}
157			R.~E. Jones and D.~H. Templeton, {\em J. Chem. Phys.\/} {\bf 25}, 1062 (1956).
158
159			\bibitem{Heyes81}
160			D.~M. Heyes, {\em J. Chem. Phys.\/} {\bf 74}, 1924 (1981).
161
162			\bibitem{Rahman71}
163			A.~Rahman and F.~H. Stillinger, {\em J. Chem. Phys.\/} {\bf 55}, 3336 (October
164			1971).
165
166			\bibitem{Adams79}
167			D.~J. Adams, E.~M. Adams, and G.~J. Hills, {\em Mol. Phys.\/} {\bf 38}, 387
168			(1979).
169
170			\bibitem{Andrea83}
171			T.~A. Andrea, W.~C. Swope, and H.~C. Andersen, {\em J. Chem. Phys.\/} {\bf 79},
172			4576 (1983).
173
174			\bibitem{Barker73}
175			J.~A. Barker and R.~O. Watts, {\em Mol. Phys.\/} {\bf 26}, 789 (1973).
176
177			\bibitem{Metropolis53}
178			N.~Metropolis, A.~W. Rosenbluth, M.~N. Rosenbluth, A.~H. Teller, and E.~Teller,
179			{\em J. Chem. Phys.\/} {\bf 21}, 1087 (1953).
180
181			\bibitem{Berendsen87}
182			H.~J.~C. Berendsen, J.~R. Grigera, and T.~P. Straatsma, {\em J. Phys. Chem.\/}
183			{\bf 91}, 6269 (1987).
184
185			\bibitem{Meineke05}
186			M.~A. Meineke, C.~F. {Vardeman II}, T.~Lin, C.~J. Fennell, and J.~D. Gezelter,
187			{\em J. Comp. Chem.\/} {\bf 26}, 252 (2005).
188
189			\bibitem{Ponder87}
190			J.~W. Ponder and F.~M. Richards, {\em J. Comp. Chem.\/} {\bf 8}, 1016 (1987).
191
192			\bibitem{Leach01}
193			A.~R. Leach, {\em Molecular Modeling: Principles and Applications\/} (Pearson
194			Educated Limited, Harlow, England, 2001), second edition.
195
196			\bibitem{Kast03}
197			S.~M. Kast, K.~F. Schmidt, and B.~Schilling, {\em Chem. Phys. Lett.\/} {\bf
198			367}, 398 (2003).
199
200			\bibitem{EPAPSdeposit}
201			See EPAPS Document No. \_\_\_\_\_\_\_\_\_\_\_\_\_\_ for the supporting
202			information. This document may be retrieved via the EPAPS homepage
203			({http://www.aip.org/pubservs/epaps.html}) or from {ftp.aip.org} in
204			the directory /epaps/. See the EPAPS homepage for more information.
205
206			\end{thebibliography}