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Revision 3000 by chrisfen, Wed Aug 30 22:36:06 2006 UTC vs.
Revision 3001 by chrisfen, Thu Sep 7 20:42:27 2006 UTC

# Line 2 | Line 2
2   %% http://bibdesk.sourceforge.net/
3  
4  
5 < %% Created for Chris Fennell at 2006-08-28 10:33:08 -0400
5 > %% Created for Chris Fennell at 2006-09-07 14:48:19 -0400
6  
7  
8   %% Saved with string encoding Western (ASCII)
# Line 16 | Line 16
16  
17   @string{jacs = {J. Am. Chem. Soc.}}
18  
19 < @string{jcc = {J. Comput. Chem.}}
19 > @string{jcc = {J. Comp. Chem.}}
20  
21   @string{jcp = {J. Chem. Phys.}}
22  
# Line 45 | Line 45
45   @string{rmp = {Rev. Mod. Phys.}}
46  
47  
48 + @article{Harvey98,
49 +        Author = {S.~C. Harvey and R.~K.-Z. Tan and T.~E. {Cheatham III}},
50 +        Date-Added = {2006-09-07 00:53:34 -0400},
51 +        Date-Modified = {2006-09-07 00:55:37 -0400},
52 +        Journal = {J. Comp. Chem.},
53 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Harvey_FlyingIceCube_98.pdf},
54 +        Number = {7},
55 +        Pages = {726-740},
56 +        Title = {The Flying Ice Cube: \uppercase{V}elocity Rescaling in Molecular Dynamics Leads to Violation of Energy Equipartition},
57 +        Volume = {19},
58 +        Year = {1998}}
59 +
60 + @article{Verlet68,
61 +        Author = {L. Verlet},
62 +        Date-Added = {2006-09-06 12:19:09 -0400},
63 +        Date-Modified = {2006-09-06 12:21:04 -0400},
64 +        Journal = {Phys. Rev.},
65 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Verlet_EqCorrFunc_67.pdf},
66 +        Number = {1},
67 +        Pages = {201-214},
68 +        Title = {Computer "Experiments" on Classical Fluids. \uppercase{II. E}quilibrium Correlation Functions},
69 +        Volume = {165},
70 +        Year = {1968}}
71 +
72 + @article{Verlet67,
73 +        Author = {L. Verlet},
74 +        Date-Added = {2006-09-06 12:16:19 -0400},
75 +        Date-Modified = {2006-09-06 12:18:57 -0400},
76 +        Journal = {Phys. Rev.},
77 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Verlet_ClassicalFluids_67.pdf},
78 +        Number = {1},
79 +        Pages = {98-103},
80 +        Title = {Computer "Experiments" on Classical Fluids. \uppercase{I. T}hermodynamic Properties of \uppercase{L}ennard-\uppercase{J}ones Molecules},
81 +        Volume = {159},
82 +        Year = {1967}}
83 +
84 + @article{Thompson83,
85 +        Author = {C.~J. Thompson},
86 +        Date-Added = {2006-09-06 11:59:49 -0400},
87 +        Date-Modified = {2006-09-06 12:02:07 -0400},
88 +        Journal = {CCP5 Quarterly},
89 +        Pages = {20-28},
90 +        Title = {Use of neighbor lists in molecular dynamics},
91 +        Volume = {8},
92 +        Year = {1983}}
93 +
94 + @article{Krautler01,
95 +        Author = {V. Kr\"{a}utler and W.~F. {van Gunsteren} and P.~H. H\"{u}nenberger},
96 +        Date-Added = {2006-09-04 00:17:15 -0400},
97 +        Date-Modified = {2006-09-04 00:29:36 -0400},
98 +        Journal = {J. Comp. Chem.},
99 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Krautler_FastSHAKE_01.pdf},
100 +        Number = {5},
101 +        Pages = {501-508},
102 +        Title = {A Fast \uppercase{SHAKE} Algorithm to Solve Distance Constraint Equations for Small Molecules in Molecular Dynamics Simulations},
103 +        Volume = {22},
104 +        Year = {2001}}
105 +
106 + @article{Swope82,
107 +        Author = {W.~C. Swope and H.~C. Andersen and P.~H. Berens and K.~R. Wilson},
108 +        Date-Added = {2006-09-03 21:47:42 -0400},
109 +        Date-Modified = {2006-09-03 21:50:26 -0400},
110 +        Journal = {J. Chem. Phys.},
111 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Swope_VelocityVerlet_82.pdf},
112 +        Number = {1},
113 +        Pages = {637-649},
114 +        Title = {A computer simulation method for the calculation of equilibrium constants for the formation of physical clusters of molecules: \uppercase{A}pplication to small water clusters},
115 +        Volume = {76},
116 +        Year = {1982}}
117 +
118 + @article{Trotter59,
119 +        Author = {H.~F. Trotter},
120 +        Date-Added = {2006-09-03 18:05:35 -0400},
121 +        Date-Modified = {2006-09-03 18:07:32 -0400},
122 +        Journal = {Proc. Am. Math Soc.},
123 +        Pages = {545-551},
124 +        Title = {On the product of Semi-Groups of Operators},
125 +        Volume = {10},
126 +        Year = {1959}}
127 +
128 + @article{Barojas73,
129 +        Author = {J. Barojas and D. Levesque and B. Quentrec},
130 +        Date-Added = {2006-09-03 14:32:02 -0400},
131 +        Date-Modified = {2006-09-03 14:34:00 -0400},
132 +        Journal = {Phys. Rev. A},
133 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Barojas_EulerSwitch_73.pdf},
134 +        Number = {3},
135 +        Pages = {1092-1105},
136 +        Title = {Simulation of Diatomic Homonuclear Liquids},
137 +        Volume = {7},
138 +        Year = {1973}}
139 +
140   @article{Mezei92,
141          Author = {M. Mezei},
142          Date-Added = {2006-08-28 07:48:49 -0400},
# Line 314 | Line 406
406   @article{Ryckaert77,
407          Author = {J.-P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen},
408          Date-Added = {2006-08-06 17:05:44 -0400},
409 <        Date-Modified = {2006-08-06 17:08:35 -0400},
409 >        Date-Modified = {2006-09-05 22:29:01 -0400},
410          Doi = {10.1016/0021-9991(77)90098-5},
411 <        Journal = {J. Comput. Phys.},
411 >        Journal = {J. Comp. Phys.},
412          Month = {March},
413          Number = {3},
414          Pages = {327-341},
# Line 607 | Line 699
699   @article{Rokhlin85,
700          Author = {V. Rokhlin},
701          Date-Added = {2006-03-19 20:02:25 -0500},
702 <        Date-Modified = {2006-03-19 20:04:19 -0500},
702 >        Date-Modified = {2006-09-05 22:30:02 -0400},
703          Doi = {10.1016/0021-9991(85)90002-6},
704 <        Journal = {J. Comput. Phys.},
704 >        Journal = {J. Comp. Phys.},
705          Month = {September},
706          Number = {2},
707          Pages = {187-207},
# Line 991 | Line 1083
1083   @article{Steinbach94,
1084          Author = {P.~J. Steinbach and B.~R. Brooks},
1085          Date-Added = {2006-03-12 19:26:45 -0500},
1086 <        Date-Modified = {2006-03-12 19:29:43 -0500},
1086 >        Date-Modified = {2006-09-05 22:30:22 -0400},
1087          Doi = {10.1002/jcc.540150702},
1088 <        Journal = {J. Comput. Chem.},
1088 >        Journal = {J. Comp. Chem.},
1089          Number = {7},
1090          Pages = {667-683},
1091          Title = {New spherical-cutoff methods for long-range forces in macromolecular simulation},
# Line 2131 | Line 2223
2223          Volume = 198,
2224          Year = 1993}
2225  
2226 < @book{Frenkel96,
2226 > @book{Frenkel02,
2227          Address = {New York},
2228          Author = {D. Frenkel and B. Smit},
2229 <        Date-Modified = {2006-07-18 15:02:21 -0400},
2229 >        Date-Modified = {2006-09-05 18:18:32 -0400},
2230 >        Edition = {2nd},
2231          Publisher = {Academic Press},
2232          Title = {Understanding Molecular Simulation: \uppercase{F}rom Algorithms to Applications},
2233 <        Year = 1996}
2233 >        Year = 2002}
2234  
2235   @article{Dullweber97,
2236          Author = {A. Dullweber and B. Leimkuhler and R. McLachlan},
# Line 2588 | Line 2681
2681  
2682   @article{Andersen83,
2683          Author = {H.~C. Andersen},
2684 <        Date-Modified = {2006-07-18 14:59:26 -0400},
2685 <        Journal = {Journal of Computational Physics},
2684 >        Date-Modified = {2006-09-05 22:28:45 -0400},
2685 >        Journal = {J. Comp. Phys.},
2686          Pages = {24-34},
2687          Title = {\uppercase{RATTLE: A} Velocity Version of the Shake Algorithm for Molecular Dynamics Calculations},
2688          Volume = 52,
# Line 2788 | Line 2881
2881  
2882   @article{Smith96,
2883          Author = {W. Smith and T. Forester},
2884 <        Date-Modified = {2006-07-18 14:56:36 -0400},
2884 >        Date-Modified = {2006-09-07 14:48:19 -0400},
2885          Journal = {J. Molec. Graphics.},
2886          Number = 3,
2887          Pages = {136-141},
2888 <        Title = {\uppercase{DL_POLY_2.0: A} general-purpose parallel molecular dynamics simulation package},
2888 >        Title = {\uppercase{DL\_POLY\_2.0: A} general-purpose parallel molecular dynamics simulation package},
2889          Volume = 14,
2890          Year = 1996}
2891  

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