ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/group/trunk/chrisDissertation/dissertation.bib
(Generate patch)

Comparing trunk/chrisDissertation/dissertation.bib (file contents):
Revision 3016 by chrisfen, Thu Sep 21 23:21:37 2006 UTC vs.
Revision 3029 by chrisfen, Wed Sep 27 14:43:49 2006 UTC

# Line 2 | Line 2
2   %% http://bibdesk.sourceforge.net/
3  
4  
5 < %% Created for Chris Fennell at 2006-09-21 15:41:30 -0400
5 > %% Created for Chris Fennell at 2006-09-27 10:13:35 -0400
6  
7  
8   %% Saved with string encoding Western (ASCII)
9  
10  
11 < @string{acp = {Adv. Chem. Phys.}}
11 > @string{acp  = {Adv. Chem. Phys.}}
12  
13 < @string{cp = {Chem. Phys.}}
13 > @string{ccp5 = {CCP5 Quarterly}}
14  
15 < @string{cpl = {Chem. Phys. Lett.}}
15 > @string{cp   = {Chem. Phys.}}
16  
17 + @string{cpl  = {Chem. Phys. Lett.}}
18 +
19   @string{jacs = {J. Am. Chem. Soc.}}
20  
21 < @string{jcc = {J. Comp. Chem.}}
21 > @string{jcc  = {J. Comp. Chem.}}
22  
23 < @string{jcp = {J. Chem. Phys.}}
23 > @string{jcp  = {J. Chem. Phys.}}
24  
25 < @string{jml = {J. Mol. Liq.}}
25 > @string{jcop = {J. Comp. Phys.}}
26  
27 < @string{jpc = {J. Phys. Chem.}}
27 > @string{jml  = {J. Mol. Liq.}}
28  
29 + @string{jpc  = {J. Phys. Chem.}}
30 +
31   @string{jpca = {J. Phys. Chem. A}}
32  
33   @string{jpcb = {J. Phys. Chem. B}}
34  
35 < @string{mp = {Mol. Phys.}}
35 > @string{mp   = {Mol. Phys.}}
36  
37 + @string{pams = {Proc. Am. Math Soc.}}
38 +
39   @string{pccp = {Phys. Chem. Chem. Phys.}}
40  
41   @string{pnas = {Proc. Natl. Acad. Sci. USA}}
42  
43 < @string{pra = {Phys. Rev. A}}
43 > @string{pr   = {Phys. Rev.}}
44  
45 < @string{prb = {Phys. Rev. B}}
45 > @string{pra  = {Phys. Rev. A}}
46  
47 < @string{pre = {Phys. Rev. E}}
47 > @string{prb  = {Phys. Rev. B}}
48  
49 < @string{prl = {Phys. Rev. Lett.}}
49 > @string{pre  = {Phys. Rev. E}}
50  
51 < @string{rmp = {Rev. Mod. Phys.}}
51 > @string{prl  = {Phys. Rev. Lett.}}
52  
53 + @string{rmp  = {Rev. Mod. Phys.}}
54  
55 +
56   @book{Tolman38,
57          Address = {New York},
58          Author = {R.~C. Tolman},
# Line 58 | Line 66
66          Author = {D. Beeman},
67          Date-Added = {2006-09-20 14:44:19 -0400},
68          Date-Modified = {2006-09-20 14:45:33 -0400},
69 <        Journal = {J. Comp. Phys.},
69 >        Journal = jcop,
70          Pages = {130-139},
71          Title = {Some Multistep Methods for Use in Molecular Dynamics Calculations},
72          Volume = {20},
# Line 91 | Line 99
99          Date-Added = {2006-09-18 14:20:06 -0400},
100          Date-Modified = {2006-09-18 14:27:13 -0400},
101          Doi = {10.1063/1.1931662},
102 <        Journal = {J. Chem. Phys.},
102 >        Journal = jcp,
103          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2005/Abascal_Tip4p-Ice_05.pdf},
104          Number = {23},
105          Pages = {234511},
# Line 104 | Line 112
112          Date-Added = {2006-09-18 09:40:15 -0400},
113          Date-Modified = {2006-09-18 09:41:55 -0400},
114          Doi = {10.1063/1.1862245},
115 <        Journal = {J. Chem. Phys.},
115 >        Journal = jcp,
116          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2005/Vega_MeltTempModels_05.pdf},
117          Number = {11},
118          Pages = {114507},
# Line 116 | Line 124
124          Author = {S.~C. Harvey and R.~K.-Z. Tan and T.~E. {Cheatham III}},
125          Date-Added = {2006-09-07 00:53:34 -0400},
126          Date-Modified = {2006-09-07 00:55:37 -0400},
127 <        Journal = {J. Comp. Chem.},
127 >        Journal = jcc,
128          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Harvey_FlyingIceCube_98.pdf},
129          Number = {7},
130          Pages = {726-740},
# Line 128 | Line 136
136          Author = {L. Verlet},
137          Date-Added = {2006-09-06 12:19:09 -0400},
138          Date-Modified = {2006-09-20 14:22:53 -0400},
139 <        Journal = {Phys. Rev.},
139 >        Journal = pr,
140          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Verlet_EqCorrFunc_67.pdf},
141          Number = {1},
142          Pages = {201-214},
# Line 140 | Line 148
148          Author = {L. Verlet},
149          Date-Added = {2006-09-06 12:16:19 -0400},
150          Date-Modified = {2006-09-20 14:22:43 -0400},
151 <        Journal = {Phys. Rev.},
151 >        Journal = pr,
152          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Verlet_ClassicalFluids_67.pdf},
153          Number = {1},
154          Pages = {98-103},
# Line 152 | Line 160
160          Author = {C.~J. Thompson},
161          Date-Added = {2006-09-06 11:59:49 -0400},
162          Date-Modified = {2006-09-06 12:02:07 -0400},
163 <        Journal = {CCP5 Quarterly},
163 >        Journal = ccp5,
164          Pages = {20-28},
165          Title = {Use of neighbor lists in molecular dynamics},
166          Volume = {8},
# Line 162 | Line 170
170          Author = {V. Kr\"{a}utler and W.~F. {van Gunsteren} and P.~H. H\"{u}nenberger},
171          Date-Added = {2006-09-04 00:17:15 -0400},
172          Date-Modified = {2006-09-04 00:29:36 -0400},
173 <        Journal = {J. Comp. Chem.},
173 >        Journal = jcc,
174          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Krautler_FastSHAKE_01.pdf},
175          Number = {5},
176          Pages = {501-508},
# Line 174 | Line 182
182          Author = {W.~C. Swope and H.~C. Andersen and P.~H. Berens and K.~R. Wilson},
183          Date-Added = {2006-09-03 21:47:42 -0400},
184          Date-Modified = {2006-09-03 21:50:26 -0400},
185 <        Journal = {J. Chem. Phys.},
185 >        Journal = jcp,
186          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Swope_VelocityVerlet_82.pdf},
187          Number = {1},
188          Pages = {637-649},
# Line 186 | Line 194
194          Author = {H.~F. Trotter},
195          Date-Added = {2006-09-03 18:05:35 -0400},
196          Date-Modified = {2006-09-03 18:07:32 -0400},
197 <        Journal = {Proc. Am. Math Soc.},
197 >        Journal = pams,
198          Pages = {545-551},
199          Title = {On the product of Semi-Groups of Operators},
200          Volume = {10},
# Line 196 | Line 204
204          Author = {J. Barojas and D. Levesque and B. Quentrec},
205          Date-Added = {2006-09-03 14:32:02 -0400},
206          Date-Modified = {2006-09-03 14:34:00 -0400},
207 <        Journal = {Phys. Rev. A},
207 >        Journal = pra,
208          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Barojas_EulerSwitch_73.pdf},
209          Number = {3},
210          Pages = {1092-1105},
# Line 209 | Line 217
217          Date-Added = {2006-08-28 07:48:49 -0400},
218          Date-Modified = {2006-08-28 07:50:59 -0400},
219          Doi = {10.1002/jcc.540130515},
220 <        Journal = {J. Comp. Chem.},
220 >        Journal = jcc,
221          Number = {5},
222          Pages = {651-656},
223          Title = {Polynomial path for the calculation of liquid state free energies from computer simulations tested on liquid water},
# Line 220 | Line 228
228          Author = {L. Pauling},
229          Date-Added = {2006-08-27 22:01:49 -0400},
230          Date-Modified = {2006-08-27 22:03:59 -0400},
231 <        Journal = {J. Am. Chem. Soc.},
231 >        Journal = jacs,
232          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ResidualEntropy/Pauling_ResidEntropy_33.pdf},
233          Pages = {2680-2684},
234          Title = {The Structure and Entropy of Ice and of Other Crystals with Some Randomness of Atomic Arrangement},
# Line 232 | Line 240
240          Date-Added = {2006-08-27 21:44:08 -0400},
241          Date-Modified = {2006-08-27 21:47:37 -0400},
242          Doi = {10.1063/1.1562610},
243 <        Journal = {J. Chem. Phys.},
243 >        Journal = jcp,
244          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Nada_6siteH2O_03.pdf},
245          Number = {16},
246          Pages = {7401-7413},
# Line 244 | Line 252
252          Author = {J.~T. Kindt and C.~A. Schmuttenmaer},
253          Date-Added = {2006-08-27 13:55:26 -0400},
254          Date-Modified = {2006-08-27 13:56:35 -0400},
255 <        Journal = {J. Phys. Chem.},
255 >        Journal = jpc,
256          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Kindt_FarIRDielectricOfPolarLiquids_96.pdf},
257          Number = {24},
258          Pages = {10373-10379},
# Line 386 | Line 394
394          Author = {J.~D. Bernal and R.~H. Fowler},
395          Date-Added = {2006-08-24 09:58:00 -0400},
396          Date-Modified = {2006-08-24 09:59:43 -0400},
397 <        Journal = {J. Chem. Phys.},
397 >        Journal = jcp,
398          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Bernal_TheoryOfWater_33.pdf},
399          Number = {8},
400          Pages = {515-548},
# Line 410 | Line 418
418          Date-Added = {2006-08-24 09:49:57 -0400},
419          Date-Modified = {2006-08-24 09:49:57 -0400},
420          Doi = {10.1063/1.2206581},
421 <        Journal = {J. Chem. Phys.},
421 >        Journal = jcp,
422          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Fennell_PairwiseSummationMethods_06.pdf},
423          Number = {23},
424          Pages = {234104(12)},
# Line 424 | Line 432
432          Author = {D.~J. Evans and S. Murad},
433          Date-Added = {2006-08-22 14:23:16 -0400},
434          Date-Modified = {2006-08-22 14:23:16 -0400},
435 <        Journal = {Mol. Phys.},
435 >        Journal = mp,
436          Pages = {327-331},
437          Title = {Singularity-free algorithm for molecular dynamics simulation of rigid polyatomics},
438          Volume = 34,
# Line 435 | Line 443
443          Date-Added = {2006-08-16 10:42:15 -0400},
444          Date-Modified = {2006-08-16 10:43:56 -0400},
445          Doi = {10.1063/1.1605941},
446 <        Journal = {J. Chem. Phys.},
446 >        Journal = jcp,
447          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Aguado_MultipoleEwald_03.pdf},
448          Number = {14},
449          Pages = {7471-7483},
# Line 473 | Line 481
481   @article{Ryckaert77,
482          Author = {J.-P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen},
483          Date-Added = {2006-08-06 17:05:44 -0400},
484 <        Date-Modified = {2006-09-05 22:29:01 -0400},
484 >        Date-Modified = {2006-09-27 10:08:56 -0400},
485          Doi = {10.1016/0021-9991(77)90098-5},
486 <        Journal = {J. Comp. Phys.},
486 >        Journal = jcop,
487          Month = {March},
488          Number = {3},
489          Pages = {327-341},
490 <        Title = {Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of {\it n}-alkanes},
490 >        Title = {Numerical integration of the cartesian equations of motion of a system with constraints: \uppercase{m}olecular dynamics of {\it n}-alkanes},
491          Volume = {23},
492          Year = {1977}}
493  
# Line 487 | Line 495
495          Author = {R.~W. Impey and P.~A. Madden and I.~R. McDonald},
496          Date-Added = {2006-08-03 08:42:21 -0400},
497          Date-Modified = {2006-08-03 08:44:06 -0400},
498 <        Journal = {Mol. Phys.},
498 >        Journal = mp,
499          Number = {3},
500          Pages = {513-539},
501          Title = {Spectroscopic and transport properties of water: \uppercase{M}odel calculations and the interpretation of experimental results},
# Line 498 | Line 506
506          Author = {K. Laasonen and M. Sprik and M. Parrinello and R. Car},
507          Date-Added = {2006-08-02 08:23:46 -0400},
508          Date-Modified = {2006-08-02 13:09:18 -0400},
509 <        Journal = {J. Chem. Phys.},
509 >        Journal = jcp,
510          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Laasonen_AbInitioLiquidWater_93.pdf},
511          Number = {11},
512          Pages = {9080-9089},
# Line 511 | Line 519
519          Date-Added = {2006-08-02 08:15:11 -0400},
520          Date-Modified = {2006-08-02 08:16:16 -0400},
521          Doi = {www.pnas.org/cgi/doi/10.1073/pnas.0602982103},
522 <        Journal = {Proc. Natl. Acad. Sci. USA},
522 >        Journal = pnas,
523          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Donchev_QuantumWater_06.pdf},
524          Number = {23},
525          Pages = {8613-8617},
# Line 534 | Line 542
542          Author = {M. Neumann and O. Steinhauser},
543          Date-Added = {2006-08-01 17:17:52 -0400},
544          Date-Modified = {2006-08-01 17:18:51 -0400},
545 <        Journal = {Mol. Phys.},
545 >        Journal = mp,
546          Number = {2},
547          Pages = {437-454},
548          Title = {The influence of boundary conditions used in machine simulations on the structure of polar systems},
# Line 545 | Line 553
553          Author = {M. Neumann},
554          Date-Added = {2006-08-01 17:16:51 -0400},
555          Date-Modified = {2006-08-01 17:17:45 -0400},
556 <        Journal = {Mol. Phys.},
556 >        Journal = mp,
557          Number = {4},
558          Pages = {841-858},
559          Title = {Dipole moment fluctuation formulas in computer simulations of polar systems},
# Line 580 | Line 588
588          Author = {M. Neumann and O. Steinhauser and G.~S. Pawley},
589          Date-Added = {2006-07-31 10:22:39 -0400},
590          Date-Modified = {2006-07-31 10:24:17 -0400},
591 <        Journal = {Mol. Phys.},
591 >        Journal = mp,
592          Number = {1},
593          Pages = {97-113},
594          Title = {Consistent calculation of the static and frequency-dependent dielectric constant in computer simulations},
# Line 591 | Line 599
599          Author = {M. Neumann},
600          Date-Added = {2006-07-31 10:19:17 -0400},
601          Date-Modified = {2006-08-02 13:17:58 -0400},
602 <        Journal = {J. Chem. Phys.},
602 >        Journal = jcp,
603          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/DielectricConst./Neumann_H2ODielConst_85.pdf},
604          Number = {12},
605          Pages = {5663-5672},
# Line 615 | Line 623
623          Author = {J.~M. Sorenson and G. Hura and R.~M. Glaeser and T. Head-Gordon},
624          Date-Added = {2006-07-21 11:41:31 -0400},
625          Date-Modified = {2006-07-21 11:44:44 -0400},
626 <        Journal = {J. Chem. Phys.},
626 >        Journal = jcp,
627          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/THGord_X-RayRadial_2000.pdf},
628          Number = {20},
629          Pages = {9149-9161},
# Line 638 | Line 646
646          Date-Added = {2006-07-20 15:28:29 -0400},
647          Date-Modified = {2006-07-20 15:29:45 -0400},
648          Doi = {10.1021/jp062700h},
649 <        Journal = {J. Phys. Chem. B},
649 >        Journal = jpcb,
650          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Shi_MixedAtomisticCGIonChannel_06.pdf},
651          Title = {Mixed Atomistic and Coarse-Grained Molecular Dynamics: Simulation of a Membrane-Bound Ion Channel},
652          Year = {2006}}
# Line 648 | Line 656
656          Date-Added = {2006-07-20 15:22:45 -0400},
657          Date-Modified = {2006-07-20 15:24:22 -0400},
658          Doi = {10.1063/1.2215614},
659 <        Journal = {J. Chem. Phys.},
659 >        Journal = jcp,
660          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Weis_OrientationalOrderHardSphereDipole_06.pdf},
661          Number = {3},
662          Pages = {034504},
# Line 661 | Line 669
669          Date-Added = {2006-07-18 10:49:48 -0400},
670          Date-Modified = {2006-08-19 19:34:36 -0400},
671          Doi = {10.1063/1.1652434},
672 <        Journal = {J. Chem. Phys.},
672 >        Journal = jcp,
673          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Rick_TIP5P-E_04.pdf},
674          Number = {13},
675          Pages = {6085-6093},
# Line 674 | Line 682
682          Date-Added = {2006-07-18 10:18:42 -0400},
683          Date-Modified = {2006-07-18 14:21:48 -0400},
684          Doi = {10.1063/1.1683075},
685 <        Journal = {J. Chem. Phys.},
685 >        Journal = jcp,
686          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Horn_TIP4P-Ew_04.pdf},
687          Number = {20},
688          Pages = {9665-9678},
# Line 687 | Line 695
695          Date-Added = {2006-04-26 09:41:52 -0400},
696          Date-Modified = {2006-07-18 14:29:43 -0400},
697          Doi = {10.1016/j.cplett.2004.10.086},
698 <        Journal = {Chem. Phys. Lett.},
698 >        Journal = cpl,
699          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Brodka_PointDipoleSlabEwald_04.pdf},
700          Pages = {62-67},
701          Title = {\uppercase{E}wald summation method with electrostatic layer correction for interactions of point dipoles in slab geometry},
# Line 699 | Line 707
707          Date-Added = {2006-04-26 09:40:15 -0400},
708          Date-Modified = {2006-07-18 14:35:47 -0400},
709          Doi = {10.1063/1.149195},
710 <        Journal = {J. Chem. Phys.},
710 >        Journal = jcp,
711          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Joannis_SlabElectrostatics_02.pdf},
712          Number = {6},
713          Pages = {2503-2512},
# Line 711 | Line 719
719          Author = {M. Kawata and M. Mikami},
720          Date-Added = {2006-04-26 09:38:01 -0400},
721          Date-Modified = {2006-07-18 14:31:24 -0400},
722 <        Journal = {Chem. Phys. Lett.},
722 >        Journal = cpl,
723          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Kawata_Rapid2DEwald_01.pdf},
724          Pages = {157-164},
725          Title = {Rapid calculation of two-dimensional \uppercase{E}wald summation},
# Line 723 | Line 731
731          Date-Added = {2006-04-26 09:36:09 -0400},
732          Date-Modified = {2006-07-18 14:29:18 -0400},
733          Doi = {10.1063/1.149195},
734 <        Journal = {J. Chem. Phys.},
734 >        Journal = jcp,
735          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Arnold_SlabElectrostatics_02.pdf},
736          Number = {6},
737          Pages = {2496-2502},
# Line 745 | Line 753
753          Author = {N. Karasawa and W.~A. {Goddard III}},
754          Date-Added = {2006-03-21 09:11:44 -0500},
755          Date-Modified = {2006-03-21 09:13:00 -0500},
756 <        Journal = {J. Phys. Chem.},
756 >        Journal = jpc,
757          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Karasawa_LatticSumConvergence_89.pdf},
758          Pages = {7320-7327},
759          Title = {Acceleration of Convergence for Lattice Sums},
# Line 768 | Line 776
776          Date-Added = {2006-03-19 20:02:25 -0500},
777          Date-Modified = {2006-09-05 22:30:02 -0400},
778          Doi = {10.1016/0021-9991(85)90002-6},
779 <        Journal = {J. Comp. Phys.},
779 >        Journal = jcop,
780          Month = {September},
781          Number = {2},
782          Pages = {187-207},
# Line 801 | Line 809
809          Author = {B.~A. Luty and W.~F. {van~Gunsteren}},
810          Date-Added = {2006-03-18 20:59:19 -0500},
811          Date-Modified = {2006-03-18 21:00:33 -0500},
812 <        Journal = {J. Phys. Chem.},
812 >        Journal = jpc,
813          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Luty_PPPMElectrostaticCalculations_96.pdf},
814          Number = {7},
815          Pages = {2581-2587},
# Line 825 | Line 833
833          Author = {P.~H. H\"{u}nenberger and J.~A. McCammon},
834          Date-Added = {2006-03-18 20:14:24 -0500},
835          Date-Modified = {2006-07-18 15:03:36 -0400},
836 <        Journal = {J. Chem. Phys.},
836 >        Journal = jcp,
837          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Hunenberger_IonSolutionEwaldArtifacts_99.pdf},
838          Number = {4},
839          Pages = {1856-1872},
# Line 837 | Line 845
845          Author = {J.~E. Roberts and J. Schnitker},
846          Date-Added = {2006-03-18 20:12:23 -0500},
847          Date-Modified = {2006-07-18 15:11:50 -0400},
848 <        Journal = {J. Phys. Chem.},
848 >        Journal = jpc,
849          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Roberts_BoundryConditionsIonWater_95.pdf},
850          Pages = {1322-1331},
851          Title = {Boundary Conditions in Sumulations of Aqueous Ionic Solutions: $\mbox{A}$ Systematic Study},
# Line 848 | Line 856
856          Author = {J.~E. Roberts and J. Schnitker},
857          Date-Added = {2006-03-18 20:10:37 -0500},
858          Date-Modified = {2006-03-18 20:12:19 -0500},
859 <        Journal = {J. Chem. Phys.},
859 >        Journal = jcp,
860          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Roberts_IonSolventEwaldProbs_94.pdf},
861          Number = {6},
862          Pages = {5024-5031},
# Line 860 | Line 868
868          Author = {I.-C. Yeh and M.~L. Berkowitz},
869          Date-Added = {2006-03-18 19:24:27 -0500},
870          Date-Modified = {2006-07-18 14:34:09 -0400},
871 <        Journal = {J. Chem. Phys.},
871 >        Journal = jcp,
872          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Yeh_SlabCorrectionEwald_99.pdf},
873          Number = {7},
874          Pages = {3155-3162},
# Line 892 | Line 900
900          Author = {S.~W. {de Leeuw} and J.~W. Perram},
901          Date-Added = {2006-03-18 19:05:18 -0500},
902          Date-Modified = {2006-03-18 19:07:48 -0500},
903 <        Journal = {Mol. Phys.},
903 >        Journal = mp,
904          Pages = {1313-1327},
905          Title = {Electrostatic Lattice Sums for Semi-Infinite Lattices},
906          Volume = {37},
# Line 913 | Line 921
921          Author = {E. Spohr},
922          Date-Added = {2006-03-18 18:51:02 -0500},
923          Date-Modified = {2006-03-18 18:52:21 -0500},
924 <        Journal = {J. Chem. Phys.},
924 >        Journal = jcp,
925          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Spohr_2DElectrostatics_97.pdf},
926          Number = {16},
927          Pages = {6342-6348},
# Line 925 | Line 933
933          Author = {D. York and W. Yang},
934          Date-Added = {2006-03-18 11:52:58 -0500},
935          Date-Modified = {2006-07-18 14:34:21 -0400},
936 <        Journal = {J. Chem. Phys.},
936 >        Journal = jcp,
937          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/York_FFPoissonEwald_94.pdf},
938          Number = {4},
939          Pages = {3298-3300},
# Line 937 | Line 945
945          Author = {J. Shimada and H. Kaneko and T. Takada},
946          Date-Added = {2006-03-18 11:10:38 -0500},
947          Date-Modified = {2006-03-18 11:12:10 -0500},
948 <        Journal = {J. Comp. Chem.},
948 >        Journal = jcc,
949          Pages = {867-78},
950          Title = {Efficient calculations of Coulombic interactions in biomolecular simulations with periodic boundary conditions},
951          Volume = {14},
# Line 977 | Line 985
985          Author = {J.~W. Perram and H.~G. Petersen and S.~W. {de Leeuw}},
986          Date-Added = {2006-03-17 13:42:04 -0500},
987          Date-Modified = {2006-03-17 13:59:01 -0500},
988 <        Journal = {Mol. Phys.},
988 >        Journal = mp,
989          Pages = {875-893},
990          Title = {An algorithm for the simulation of condensed matter that grows as the 3/2 power of the number of particles},
991          Volume = {65},
# Line 1009 | Line 1017
1017          Date-Added = {2006-03-16 09:49:22 -0500},
1018          Date-Modified = {2006-07-18 15:18:48 -0400},
1019          Doi = {10.1021/jp9937757},
1020 <        Journal = {J. Phys. Chem. B},
1020 >        Journal = jpcb,
1021          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicityMD_00.pdf},
1022          Number = {15},
1023          Pages = {3668-3675},
# Line 1032 | Line 1040
1040          Author = {H.~G. Petersen},
1041          Date-Added = {2006-03-16 08:43:02 -0500},
1042          Date-Modified = {2006-07-18 14:33:13 -0400},
1043 <        Journal = {J. Chem. Phys.},
1043 >        Journal = jcp,
1044          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Petersen_AccuracyofPME_95.pdf},
1045          Month = {September},
1046          Number = {9},
# Line 1045 | Line 1053
1053          Author = {B.~A. Luty and I.~G. Tironi and W.~F. {van~Gunsteren}},
1054          Date-Added = {2006-03-16 08:39:13 -0500},
1055          Date-Modified = {2006-03-16 08:41:15 -0500},
1056 <        Journal = {J. Chem. Phys.},
1056 >        Journal = jcp,
1057          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Luty_LatticeSumElectrostatics_95.pdf},
1058          Number = {8},
1059          Pages = {3014-3021},
# Line 1057 | Line 1065
1065          Author = {J.~A. Barker and R.~O. Watts},
1066          Date-Added = {2006-03-15 18:58:17 -0500},
1067          Date-Modified = {2006-07-18 14:44:12 -0400},
1068 <        Journal = {Mol. Phys.},
1068 >        Journal = mp,
1069          Pages = {789-792},
1070          Title = {$\mbox{Monte Carlo}$ studies of the dielectric properties of water-like models},
1071          Volume = {26},
# Line 1067 | Line 1075
1075          Author = {D.~J. Adams and E.~M. Adams and G.~J. Hills},
1076          Date-Added = {2006-03-15 17:46:36 -0500},
1077          Date-Modified = {2006-03-15 17:48:04 -0500},
1078 <        Journal = {Mol. Phys.},
1078 >        Journal = mp,
1079          Number = {2},
1080          Pages = {387-400},
1081          Title = {The computer simulation of polar liquids},
# Line 1078 | Line 1086
1086          Author = {A. Rahman and F.~H. Stillinger},
1087          Date-Added = {2006-03-15 17:04:53 -0500},
1088          Date-Modified = {2006-03-15 17:07:29 -0500},
1089 <        Journal = {J. Chem. Phys.},
1089 >        Journal = jcp,
1090          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Rahman_MDWater_71.pdf},
1091          Month = {October},
1092          Number = {7},
# Line 1091 | Line 1099
1099          Author = {T.~A. Andrea and W.~C. Swope and H.~C. Andersen},
1100          Date-Added = {2006-03-15 15:16:12 -0500},
1101          Date-Modified = {2006-03-15 15:18:10 -0500},
1102 <        Journal = {J. Chem. Phys.},
1102 >        Journal = jcp,
1103          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Andrea_LongRangeForcesInWater_83.pdf},
1104          Number = {9},
1105          Pages = {4576-4584},
# Line 1103 | Line 1111
1111          Author = {S.~G. Brush and H.~L. Sahlin and E. Teller},
1112          Date-Added = {2006-03-13 16:55:39 -0500},
1113          Date-Modified = {2006-07-18 14:48:59 -0400},
1114 <        Journal = {J. Chem. Phys.},
1114 >        Journal = jcp,
1115          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Brush_MCEwaldApplication_66.pdf},
1116          Month = {September},
1117          Number = {6},
# Line 1126 | Line 1134
1134          Author = {R.~E. Jones and D.~H. Templeton},
1135          Date-Added = {2006-03-13 13:25:58 -0500},
1136          Date-Modified = {2006-07-18 14:24:50 -0400},
1137 <        Journal = {J. Chem. Phys.},
1137 >        Journal = jcp,
1138          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Jones_ChargeShapeFunctions_56.pdf},
1139          Number = {5},
1140          Pages = {1062-1063},
# Line 1138 | Line 1146
1146          Author = {D.~M. Heyes},
1147          Date-Added = {2006-03-13 13:12:45 -0500},
1148          Date-Modified = {2006-03-13 13:14:27 -0500},
1149 <        Journal = {J. Chem. Phys.},
1149 >        Journal = jcp,
1150          Keywords = {Empty Keywords},
1151          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Heyes_CoulombChargeSpreading_81.pdf},
1152          Number = {3},
# Line 1152 | Line 1160
1160          Date-Added = {2006-03-12 19:26:45 -0500},
1161          Date-Modified = {2006-09-05 22:30:22 -0400},
1162          Doi = {10.1002/jcc.540150702},
1163 <        Journal = {J. Comp. Chem.},
1163 >        Journal = jcc,
1164          Number = {7},
1165          Pages = {667-683},
1166          Title = {New spherical-cutoff methods for long-range forces in macromolecular simulation},
# Line 1175 | Line 1183
1183          Author = {U. Essmann and L. Perera and M.~L. Berkowitz and T. Darden and H. Lee and L.~G. Pedersen},
1184          Date-Added = {2006-03-05 12:25:25 -0500},
1185          Date-Modified = {2006-07-18 14:30:21 -0400},
1186 <        Journal = {J. Chem. Phys.},
1186 >        Journal = jcp,
1187          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Essmann_SmoothPME_95.pdf},
1188          Number = {19},
1189          Pages = {8577-8593},
# Line 1187 | Line 1195
1195          Author = {S.~M. Kast and K.~F. Schmidt and B. Schilling},
1196          Date-Added = {2006-02-18 16:47:26 -0500},
1197          Date-Modified = {2006-02-18 16:51:25 -0500},
1198 <        Journal = {Chem. Phys. Lett.},
1198 >        Journal = cpl,
1199          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/WolfApplications/Kast_dampedCoulomb_03.pdf},
1200          Pages = {398-404},
1201          Title = {Integral equation theory for correcting truncation errors in molecular simulations},
# Line 1209 | Line 1217
1217          Author = {D. Zahn and B. Schilling and S.~M. Kast},
1218          Date-Added = {2006-02-15 09:21:27 -0500},
1219          Date-Modified = {2006-07-18 15:19:05 -0400},
1220 <        Journal = {J. Phys. Chem. B},
1220 >        Journal = jpcb,
1221          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/WolfApplications/Zahn_enhancedWolfH2O_02.pdf},
1222          Number = {41},
1223          Pages = {10725-10732},
# Line 1221 | Line 1229
1229          Author = {D. Wolf and P. Keblinski and S.~R. Phillpot and J. Eggebrecht},
1230          Date-Added = {2006-02-15 09:09:39 -0500},
1231          Date-Modified = {2006-07-17 12:28:56 -0400},
1232 <        Journal = {J. Chem. Phys.},
1232 >        Journal = jcp,
1233          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/Wolf_electroCorr_99.pdf},
1234          Number = {17},
1235          Pages = {8255-8282},
# Line 1240 | Line 1248
1248  
1249   @article{Evans77,
1250          Author = {D.~J. Evans},
1251 <        Journal = {Mol. Phys.},
1251 >        Journal = mp,
1252          Pages = {317-325},
1253          Title = {On the representation of orientation space},
1254          Volume = 34,
# Line 1356 | Line 1364
1364   @article{Cascales98,
1365          Author = {J.~J.~L. Cascales and J.~G.~H. Cifre and J.~G. de~la~Torre},
1366          Date-Modified = {2006-07-18 15:01:21 -0400},
1367 <        Journal = {J. Phys. Chem. B},
1367 >        Journal = jpcb,
1368          Pages = {625-631},
1369          Title = {Anaesthetic mechanism on a model biological membrane: \uppercase{A} molecular dynamics simulation study},
1370          Volume = 102,
# Line 1364 | Line 1372
1372  
1373   @article{Bassolino95,
1374          Author = {D. Bassolino and H.~E. Alper and T.~R. Stouch},
1375 <        Journal = {J. Am. Chem. Soc.},
1375 >        Journal = jacs,
1376          Pages = {4118-4129},
1377          Title = {MECHANISM OF SOLUTE DIFFUSION THROUGH LIPID BILAYER-MEMBRANES BY MOLECULAR-DYNAMICS SIMULATION},
1378          Volume = 117,
# Line 1372 | Line 1380
1380  
1381   @article{Alper95,
1382          Author = {H.~E. Alper and T.~R. Stouch},
1383 <        Journal = {J. Phys. Chem.},
1383 >        Journal = jpc,
1384          Pages = {5724-5731},
1385          Title = {ORIENTATION AND DIFFUSION OF A DRUG ANALOG IN BIOMEMBRANES - MOLECULAR-DYNAMICS SIMULATIONS},
1386          Volume = 99,
# Line 1380 | Line 1388
1388  
1389   @article{Sok92,
1390          Author = {R.~M. Sok and H.~J.~C. Berendsen and W.~F. van~Gunsteren},
1391 <        Journal = {J. Chem. Phys.},
1391 >        Journal = jcp,
1392          Pages = {4699-4704},
1393          Title = {MOLECULAR-DYNAMICS SIMULATION OF THE TRANSPORT OF SMALL MOLECULES ACROSS A POLYMER MEMBRANE},
1394          Volume = 96,
# Line 1397 | Line 1405
1405   @article{Rabani97,
1406          Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne},
1407          Date-Modified = {2006-07-18 15:11:37 -0400},
1408 <        Journal = {J. Chem. Phys.},
1408 >        Journal = jcp,
1409          Pages = {6867-6876},
1410          Title = {Calculating the hopping rate for self-diffusion on rough potential energy surfaces: $\mbox{C}$age correlations},
1411          Volume = 107,
# Line 1480 | Line 1488
1488          Date-Modified = {2006-07-18 15:04:56 -0400},
1489          Journal = pre,
1490          Pages = {4626-4641},
1491 <        Title = {Testing mode-coupling theory for a supercooled binary $\mbox{Lennard-Jones} mixtures: \uppercase{T}he van \uppercase{H}ove corraltion function},
1491 >        Title = {Testing mode-coupling theory for a supercooled binary $\mbox{Lennard-Jones}$ mixtures: \uppercase{T}he van \uppercase{H}ove corraltion function},
1492          Volume = 51,
1493          Year = 1995}
1494  
# Line 1570 | Line 1578
1578  
1579   @article{Barenco95,
1580          Author = {A. Barenco and C.~H. Bennett and R. Cleve and D.~P. DiVincenzo and N. Margolus and P. Shor and T. Sleator and J.~A. Smolin and H. Weinfurter},
1581 <        Journal = {Phys. Rev. A},
1581 >        Journal = pra,
1582          Pages = {3457-3467},
1583          Title = {elementary gates for quantum computation},
1584          Volume = 52,
# Line 1595 | Line 1603
1603  
1604   @article{Calderbank96,
1605          Author = {A.~R. Calderbank and P.~W. Shor},
1606 <        Journal = {Phys. Rev. A},
1606 >        Journal = pra,
1607          Pages = {1098-1105},
1608          Title = {Good quantum error-correcting codes exist},
1609          Volume = 54,
# Line 1811 | Line 1819
1819   @article{Brooks83,
1820          Author = {B.~R. Brooks and R.~E. Bruccoleri and B.~D. Olafson and D.~J. States and S. Swaminathan and M. Karplus},
1821          Date-Modified = {2006-07-18 15:00:32 -0400},
1822 <        Journal = {J. Comp. Chem.},
1822 >        Journal = jcc,
1823          Pages = {187-217},
1824          Title = {\uppercase{CHARMM: A} Program for Macromolecular Energy, Minimization, and Dynamics Calculations},
1825          Volume = 4,
# Line 1936 | Line 1944
1944   @article{Smith82,
1945          Author = {W. Smith},
1946          Date-Modified = {2006-07-18 14:33:49 -0400},
1947 <        Journal = {CCP5 Quarterly},
1947 >        Journal = ccp5,
1948          Pages = {13-25},
1949          Title = {Point multipoles in the \uppercase{E}wald summation},
1950          Volume = 4,
# Line 2195 | Line 2203
2203  
2204   @article{Shlesinger84,
2205          Author = {M.~F. Shlesinger and E.~W. Montroll},
2206 <        Journal = {Proc. Natl. Acad. Sci. USA},
2206 >        Journal = pnas,
2207          Pages = {1280-1283},
2208          Title = {On the Williams-Watts function of dielectric relaxation},
2209          Volume = 81,
# Line 2203 | Line 2211
2211  
2212   @article{Klafter86,
2213          Author = {J. Klafter and M.~F. Shlesinger},
2214 <        Journal = {Proc. Natl. Acad. Sci. USA},
2214 >        Journal = pnas,
2215          Pages = {848-851},
2216          Title = {On the relationship among three theories of relaxation in disordered systems},
2217          Volume = 83,
# Line 2340 | Line 2348
2348   @article{Liu96,
2349          Author = {Y. Liu and T. Ichiye},
2350          Date-Modified = {2006-08-22 14:39:40 -0400},
2351 <        Journal = {Chem. Phys. Lett.},
2351 >        Journal = cpl,
2352          Pages = {334-340},
2353          Title = {The static dielectric constant of the soft sticky dipole model of liquid water: $\mbox{Monte Carlo}$ simulation},
2354          Volume = 256,
# Line 2349 | Line 2357
2357   @article{Chandra99,
2358          Author = {A. Chandra and T. Ichiye},
2359          Date-Modified = {2006-08-22 14:41:50 -0400},
2360 <        Journal = {J. Chem. Phys.},
2360 >        Journal = jcp,
2361          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Chandra_SSDdynamics_99.pdf},
2362          Number = 6,
2363          Pages = {2701-2709},
# Line 2437 | Line 2445
2445   @article{Darden93,
2446          Author = {T. Darden and D. York and L. Pedersen},
2447          Date-Modified = {2006-07-18 15:01:45 -0400},
2448 <        Journal = {J. Chem. Phys.},
2448 >        Journal = jcp,
2449          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Darden_ParticleMeshEwald_93.pdf},
2450          Number = 12,
2451          Pages = {10089-10092},
# Line 2448 | Line 2456
2456   @article{Goetz98,
2457          Author = {R. Goetz and R. Lipowsky},
2458          Date-Modified = {2006-07-18 15:03:05 -0400},
2459 <        Journal = {J. Chem. Phys.},
2459 >        Journal = jcp,
2460          Number = 17,
2461          Pages = 7397,
2462          Title = {Computer simulations of bilayer membranes: \uppercase{S}elf-assembly and interfacial tension},
# Line 2476 | Line 2484
2484   @article{Metropolis53,
2485          Author = {N. Metropolis and A.~W. Rosenbluth and M.~N. Rosenbluth and A.~H. Teller and E. Teller},
2486          Date-Modified = {2006-03-09 10:44:24 -0500},
2487 <        Journal = {J. Chem. Phys.},
2487 >        Journal = jcp,
2488          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Metropolis_MCCalculations_53.pdf},
2489          Pages = {1087-1092},
2490          Title = {Equation of State Calculations by Fast Computing Machines},
# Line 2500 | Line 2508
2508          Year = 1987}
2509  
2510   @article{Pearlman95,
2511 <        Author = {David~A. Pearlman and David~A. Case and James~W. Caldwell and Wilson~S. Ross and Thomas~E. Cheatham~III and Steve DeBolt and David Ferguson and George Seibel and Peter Kollman},
2512 <        Date-Modified = {2006-07-18 14:56:08 -0400},
2511 >        Author = {David~A. Pearlman and David~A. Case and James~W. Caldwell and Wilson~S. Ross and Thomas~E. {Cheatham~III} and Steve DeBolt and David Ferguson and George Seibel and Peter Kollman},
2512 >        Date-Modified = {2006-09-27 10:00:28 -0400},
2513          Journal = {Computer Physics Communications},
2514          Pages = {1-41},
2515          Title = {\uppercase{AMBER}, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics, and free energy calculations to simulate the structural and energetic properties of molecules},
# Line 2545 | Line 2553
2553  
2554   @article{Soper86,
2555          Author = {A.~K. Soper and M.~G. Phillips},
2556 +        Date-Modified = {2006-09-27 10:08:19 -0400},
2557          Journal = cp,
2558          Number = 1,
2559          Pages = {47-60},
2560 <        Title = {A new determination of the structure of water at 298K},
2560 >        Title = {A new determination of the structure of water at 298\uppercase{K}},
2561          Volume = 107,
2562          Year = 1986}
2563  
2564   @article{Plimpton95,
2565          Author = {S. Plimpton},
2566          Date-Modified = {2006-02-15 10:30:31 -0500},
2567 <        Journal = {J. Comp. Phys.},
2567 >        Journal = jcop,
2568          Pages = {1-19},
2569          Title = {Fast Parallel Algorithms for Short-Range Molecular Dymanics},
2570          Volume = 117,
# Line 2713 | Line 2722
2722   @article{Nina02,
2723          Author = {M. Nina and T. Simonson},
2724          Date-Modified = {2006-07-18 15:08:00 -0400},
2725 <        Journal = {J. Phys. Chem. B},
2725 >        Journal = jpcb,
2726          Pages = {3696-3705},
2727          Title = {Molecular Dynamics of the $\text{tRNA}^{\text{Ala}}$ Acceptor Stem: $\mbox{C}$omparison between Continuum Reaction Field and Particle-Mesh \uppercase{E}wald Electrostatic Treatments},
2728          Volume = 106,
# Line 2740 | Line 2749
2749   @article{Marrink04,
2750          Author = {S.~J. Marrink and A.~H. de~Vries and A.~E. Mark},
2751          Date-Modified = {2006-02-15 10:28:28 -0500},
2752 <        Journal = {J. Phys. Chem. B},
2752 >        Journal = jpcb,
2753          Pages = {750-760},
2754          Title = {Coarse Grained Model for Semiquantitative Lipid Simulations},
2755          Volume = 108,
# Line 2749 | Line 2758
2758   @article{Andersen83,
2759          Author = {H.~C. Andersen},
2760          Date-Modified = {2006-09-05 22:28:45 -0400},
2761 <        Journal = {J. Comp. Phys.},
2761 >        Journal = jcop,
2762          Pages = {24-34},
2763          Title = {\uppercase{RATTLE: A} Velocity Version of the Shake Algorithm for Molecular Dynamics Calculations},
2764          Volume = 52,
# Line 2758 | Line 2767
2767   @article{Hura00,
2768          Author = {G. Hura and J.~M. Sorenson and R.~M. Glaeser and T. Head-Gordon},
2769          Date-Modified = {2006-07-21 11:45:15 -0400},
2770 <        Journal = {J. Chem. Phys.},
2770 >        Journal = jcp,
2771          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/THGord_X-RayH2O_2000.pdf},
2772          Pages = {9140-9148},
2773          Title = {A high-quality x-ray scattering experiment on liquid water at ambient conditions},
# Line 2786 | Line 2795
2795   @article{Egberts88,
2796          Author = {E. Egberts and H.~J.~C. Berendsen},
2797          Date-Modified = {2006-02-15 10:16:43 -0500},
2798 <        Journal = {J. Chem. Phys.},
2798 >        Journal = jcp,
2799          Pages = {3718-3732},
2800          Title = {Molecular Dynamics Simulation of a smectic liquid crystal with atomic detail},
2801          Volume = 89,
# Line 2795 | Line 2804
2804   @article{Holz00,
2805          Author = {M. Holz and S.~R. Heil and A. Sacco},
2806          Date-Modified = {2006-08-06 14:07:16 -0400},
2807 <        Journal = {Phys. Chem. Chem. Phys.},
2807 >        Journal = pccp,
2808          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Holz_SelfDiffusionOfWaterFromNMR_00.pdf},
2809          Pages = {4740-4742},
2810          Title = {Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate $^1$\uppercase{h nmr pfg} measurements},
# Line 2837 | Line 2846
2846   @article{Klein01,
2847          Author = {J.~C. Shelley andf M.~Y. Shelley and R.~C. Reeder and S. Bandyopadhyay and M.~L. Klein},
2848          Date-Modified = {2006-02-15 10:27:22 -0500},
2849 <        Journal = {J. Phys. Chem. B},
2849 >        Journal = jpcb,
2850          Pages = {4464-4470},
2851          Title = {A Coarse Grain Model for Phospholipid Simulations},
2852          Volume = 105,
# Line 2846 | Line 2855
2855   @article{Marrink03,
2856          Author = {S.~J. Marrink and A.~E. Mark},
2857          Date-Modified = {2006-03-16 09:54:52 -0500},
2858 <        Journal = {J. Am. Chem. Soc.},
2858 >        Journal = jacs,
2859          Pages = {15233-15242},
2860          Title = {Molecular Dynamics Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles},
2861          Volume = 125,
# Line 2959 | Line 2968
2968   @article{Ponder87,
2969          Author = {J.~W. Ponder and F.~M. Richards},
2970          Date-Modified = {2006-02-15 10:13:45 -0500},
2971 <        Journal = {J. Comp. Chem.},
2971 >        Journal = jcc,
2972          Number = 7,
2973          Pages = {1016-1024},
2974          Title = {AN EFFICIENT NEWTON-LIKE METHOD FOR MOLECULAR MECHANICS ENERGY MINIMIZATION OF LARGE MOLECULES},
# Line 2997 | Line 3006
3006   @article{Meineke05,
3007          Author = {M.~A. Meineke and C.~F. {Vardeman II} and T. Lin and C.~J. Fennell and J.~D. Gezelter},
3008          Date-Modified = {2006-07-18 15:22:51 -0400},
3009 <        Journal = {J. Comp. Chem.},
3009 >        Journal = jcc,
3010          Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Meineke_OOPSE_05.pdf},
3011          Pages = {252-271},
3012          Title = {$\mbox{OOPSE: A}$n Open Source Object-Oriented Parallel Simulation Engine for Molecular Dynamics},
# Line 3168 | Line 3177
3177  
3178   @article{Gallagher03,
3179          Author = {K.~R. Gallagher and K.~A. Sharp},
3180 +        Date-Modified = {2006-09-27 10:13:16 -0400},
3181          Journal = jacs,
3182 <        Pages = 9853,
3182 >        Pages = {9853-9860},
3183          Title = {A New Angle on Heat Capacity Changes in Hydrophobic Solvation},
3184          Volume = 125,
3185          Year = 2003}

Diff Legend

– Removed lines
+ Added lines
< Changed lines
> Changed lines