| 1 |
gezelter |
1244 |
############################################################# |
| 2 |
|
|
# |
| 3 |
|
|
# SHAPE potential AtomType file using Amber99 parameters |
| 4 |
|
|
# |
| 5 |
|
|
# Arithmetic addition of Rvdw/2 values to make Rvdw |
| 6 |
|
|
# |
| 7 |
|
|
# Geometric mean for epsilons |
| 8 |
|
|
# |
| 9 |
|
|
# V = Eps [ (Rvdw/r)^12 - 2 (Rvdw/r)^6 ] |
| 10 |
|
|
# |
| 11 |
|
|
# Atype Mass Rvdw/2 Eps |
| 12 |
|
|
################################################### |
| 13 |
|
|
C 12.01 1.9080 0.0860 |
| 14 |
|
|
CA 12.01 1.9080 0.0860 |
| 15 |
|
|
CB 12.01 1.9080 0.0860 |
| 16 |
|
|
CC 12.01 1.9080 0.0860 |
| 17 |
|
|
CD 12.01 1.9080 0.0860 |
| 18 |
|
|
CK 12.01 1.9080 0.0860 |
| 19 |
|
|
CM 12.01 1.9080 0.0860 |
| 20 |
|
|
CN 12.01 1.9080 0.0860 |
| 21 |
|
|
CQ 12.01 1.9080 0.0860 |
| 22 |
|
|
CR 12.01 1.9080 0.0860 |
| 23 |
|
|
CT 12.01 1.9080 0.1094 |
| 24 |
|
|
CV 12.01 1.9080 0.0860 |
| 25 |
|
|
CW 12.01 1.9080 0.0860 |
| 26 |
|
|
C* 12.01 1.9080 0.0860 |
| 27 |
|
|
CY 12.01 1.9080 0.0860 |
| 28 |
|
|
CZ 12.01 1.9080 0.0860 |
| 29 |
|
|
C0 40.08 1.7131 0.459789 |
| 30 |
|
|
H 1.008 0.6000 0.0157 |
| 31 |
|
|
HC 1.008 1.4870 0.0157 |
| 32 |
|
|
H1 1.008 1.3870 0.0157 |
| 33 |
|
|
H2 1.008 1.2870 0.0157 |
| 34 |
|
|
H3 1.008 1.1870 0.0157 |
| 35 |
|
|
HA 1.008 1.4590 0.0150 |
| 36 |
|
|
H4 1.008 1.4090 0.0150 |
| 37 |
|
|
H5 1.008 1.3590 0.0150 |
| 38 |
|
|
HO 1.008 0.0000 0.0000 |
| 39 |
|
|
HS 1.008 0.6000 0.0157 |
| 40 |
|
|
HW 1.008 0.0000 0.0000 |
| 41 |
|
|
HP 1.008 1.1000 0.0157 |
| 42 |
|
|
HZ 1.008 1.4590 0.0150 |
| 43 |
|
|
F 19.00 1.75 0.061 |
| 44 |
|
|
Cl 35.45 1.948 0.265 |
| 45 |
|
|
Br 79.90 2.22 0.320 |
| 46 |
|
|
I 126.9 2.35 0.40 |
| 47 |
|
|
IM 35.45 2.47 0.1 |
| 48 |
|
|
IB 131.0 5.0 0.1 |
| 49 |
|
|
MG 24.305 0.7926 0.8947 |
| 50 |
|
|
N 14.01 1.8240 0.1700 |
| 51 |
|
|
NA 14.01 1.8240 0.1700 |
| 52 |
|
|
NB 14.01 1.8240 0.1700 |
| 53 |
|
|
NC 14.01 1.8240 0.1700 |
| 54 |
|
|
N2 14.01 1.8240 0.1700 |
| 55 |
|
|
N3 14.01 1.8240 0.1700 |
| 56 |
|
|
NT 14.01 1.8240 0.1700 |
| 57 |
|
|
N* 14.01 1.8240 0.1700 |
| 58 |
|
|
NY 14.01 1.8240 0.1700 |
| 59 |
|
|
O 16.00 1.6612 0.2100 |
| 60 |
|
|
O2 16.00 1.6612 0.2100 |
| 61 |
|
|
OW 16.00 1.7683 0.1520 |
| 62 |
|
|
OH 16.00 1.7210 0.2104 |
| 63 |
|
|
OS 16.00 1.6837 0.1700 |
| 64 |
|
|
P 30.97 2.1000 0.2000 |
| 65 |
|
|
S 32.06 2.0000 0.2500 |
| 66 |
|
|
SH 32.06 2.0000 0.2500 |
| 67 |
|
|
CU 63.55 1.2 0.05 |
| 68 |
|
|
Li 6.94 1.1370 0.0183 |
| 69 |
|
|
IP 22.99 1.8680 0.00277 |
| 70 |
|
|
Na 22.99 1.8680 0.00277 |
| 71 |
|
|
K 39.10 2.6580 0.000328 |
| 72 |
|
|
Rb 85.47 2.9560 0.00017 |
| 73 |
|
|
Cs 132.91 3.3950 0.0000806 |
| 74 |
|
|
Zn 65.4 1.10 0.0125 |
| 75 |
|
|
LP 3.00 0.00 0.0000 |