Now prints out a .xyz file of the reference configuration
Fixes to gridbuilder. Now gives proper sigma, s, and epsilon values
a few bug fixes
Fixed the grid builder rotation problems
Now calculates energies and builds the grid files. There are still bugs, but it compiles and runs...
Built principle axis determination and molecule rotation into calcRefCoords in RigidBody.cpp
Cleaned up unused variables. Added findMaxExtent to RigidBody.cpp
Major changes for rigidbodies
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