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##################################################### |
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# Makefile for SHAPES # |
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##################################################### |
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# You should not change anything here. # |
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##################################################### |
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|
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# No make rules by default |
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.SUFFIXES : .c .cpp .hpp .h $(O) |
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|
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# Extension of object files |
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O=.o |
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|
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# Extension of executables |
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EXE= |
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|
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# Bourn shell |
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SHELL=/bin/sh |
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|
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# Path prefix for installation links |
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PREFIX=/usr/local |
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|
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# Location of the shapes home |
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SHAPES_HOME=/usr/local/shapes |
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VDW_PARAM_DIR=/usr/local/shapes/share/vdwFiles |
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|
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# C compiler |
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CC=icc |
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|
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# C++ compiler |
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CXX=icpc |
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|
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# ar |
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AR=ar |
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|
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# ranlib |
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RANLIB=ranlib |
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|
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# rm |
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RM=rm -f |
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|
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# soft link |
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LN_S=ln -s |
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|
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# BSD install |
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INSTALL=@INSTALL@ |
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INSTALL_PROGRAM=@INSTALL_PROGRAM@ |
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INSTALL_DATA=@INSTALL_DATA@ |
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MKINSTALLDIRS=@MKINSTALLDIRS@ |
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|
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# fftw library and include files |
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FFTWINC = -I/usr/local/include |
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FFTWLIB = -Wl,-R/usr/local/lib -L/usr/local/lib/ -lfftw3 |
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|
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# cgicc library and include files |
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CGICCINC = -I/usr/local/include |
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CGICCLIB = -Wl,-R/usr/local/lib -L/usr/local/lib/ -lcgicc |
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|
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# CPP flags |
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CPPFLAGS= |
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|
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# C flags |
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CFLAGS_C= -O3 |
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|
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# C++ flags |
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CXXFLAGS_C= -O3 |
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|
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# LDFLAGS |
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LDFLAGS= |
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|
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# First do compile-time flags: |
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|
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DECLARE=-DVDW_PATH="$(VDW_PARAM_DIR)" |
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|
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# include paths starting with "." are all relative to the SUBDIRS!!! |
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|
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INCLUDES= -I.. $(FFTWINC) |
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|
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CFLAGS=$(CFLAGS_C) $(INCLUDES) $(DECLARE) |
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CXXFLAGS=$(CXXFLAGS_C) $(INCLUDES) $(DECLARE) |
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DEPFLAGS=$(CFLAGS_C) $(INCLUDES) -I. |
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|
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SRC_DIR := .. |
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|
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SHAPER=shaper$(EXE) |
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VISUALIZER=visualizer$(EXE) |
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LDADD= |
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|
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# Then do the compile rules: |
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|
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obj/%.o: %.cpp |
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cd obj; $(CXX) $(CXXFLAGS) -c $(SRC_DIR)/$< |
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|
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obj/%.o: %.c |
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cd obj; $(CC) $(CFLAGS) -c $(SRC_DIR)/$< |
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|
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# Then list what we have to compile |
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# |
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SHAPER_C_FILES = \ |
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$(DIR)/shaperCmd.c \ |
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$(DIR)/MatVec3.c \ |
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$(DIR)/cospmls.c \ |
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$(DIR)/makeweights.c \ |
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$(DIR)/naive_synthesis.c \ |
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$(DIR)/pmls.c \ |
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$(DIR)/primitive.c \ |
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$(DIR)/seminaive.c \ |
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$(DIR)/FST_semi_memo.c |
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|
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SHAPERCGI_C_FILES = \ |
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$(DIR)/MatVec3.c \ |
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$(DIR)/cospmls.c \ |
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$(DIR)/makeweights.c \ |
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$(DIR)/naive_synthesis.c \ |
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$(DIR)/pmls.c \ |
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$(DIR)/primitive.c \ |
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$(DIR)/seminaive.c \ |
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$(DIR)/FST_semi_memo.c |
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|
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VISUALIZER_C_FILES = \ |
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$(DIR)/visualizerCmd.c |
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|
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SHAPER_CXX_FILES = \ |
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$(DIR)/shaper.cpp \ |
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$(DIR)/PDBReader.cpp \ |
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$(DIR)/RigidBody.cpp \ |
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$(DIR)/VDWAtom.cpp \ |
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$(DIR)/GridBuilder.cpp \ |
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$(DIR)/SphereHarm.cpp |
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|
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SHAPERCGI_CXX_FILES = \ |
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$(DIR)/shaperCGI.cpp \ |
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$(DIR)/PDBReader.cpp \ |
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$(DIR)/RigidBody.cpp \ |
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$(DIR)/VDWAtom.cpp \ |
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$(DIR)/GridBuilder.cpp \ |
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$(DIR)/SphereHarm.cpp |
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|
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VISUALIZER_CXX_FILES = \ |
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$(DIR)/SHFunc.cpp \ |
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$(DIR)/SHAPE.cpp \ |
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$(DIR)/visualizer.cpp |
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|
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VDW_FILES= \ |
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amber99.vdw \ |
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charmm27.vdw \ |
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gaff.vdw \ |
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LJ.vdw \ |
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oplsaal.vdw |
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|
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DIR:=. |
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SHAPER_C_SRCS := $(SHAPER_C_FILES) |
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SHAPER_CXX_SRCS := $(SHAPER_CXX_FILES) |
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SHAPER_SRCS := $(SHAPER_C_SRCS) $(SHAPER_CXX_SRCS) |
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SHAPERCGI_C_SRCS := $(SHAPERCGI_C_FILES) |
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SHAPERCGI_CXX_SRCS := $(SHAPERCGI_CXX_FILES) |
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SHAPERCGI_SRCS := $(SHAPERCGI_C_SRCS) $(SHAPERCGI_CXX_SRCS) |
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VISUALIZER_C_SRCS := $(VISUALIZER_C_FILES) |
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VISUALIZER_CXX_SRCS := $(VISUALIZER_CXX_FILES) |
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VISUALIZER_SRCS := $(VISUALIZER_C_SRCS) $(VISUALIZER_CXX_SRCS) |
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|
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DIR:=obj |
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SHAPER_C_OBJS := $(SHAPER_C_FILES:.c=.o) |
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SHAPER_CXX_OBJS := $(SHAPER_CXX_FILES:.cpp=.o) |
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SHAPER_OBJS := $(SHAPER_C_OBJS) $(SHAPER_CXX_OBJS) |
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SHAPERCGI_C_OBJS := $(SHAPERCGI_C_FILES:.c=.o) |
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SHAPERCGI_CXX_OBJS := $(SHAPERCGI_CXX_FILES:.cpp=.o) |
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SHAPERCGI_OBJS := $(SHAPERCGI_C_OBJS) $(SHAPERCGI_CXX_OBJS) |
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VISUALIZER_C_OBJS := $(VISUALIZER_C_FILES:.c=.o) |
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VISUALIZER_CXX_OBJS := $(VISUALIZER_CXX_FILES:.cpp=.o) |
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VISUALIZER_OBJS := $(VISUALIZER_C_OBJS) $(VISUALIZER_CXX_OBJS) |
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|
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SUBDIRS = obj |
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|
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# Possible make targets: |
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|
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all: shaper visualizer shaperCGI |
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|
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shaper$(EXE) : $(SHAPER_OBJS) |
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$(CXX) $(CFLAGS) $(SHAPER_OBJS) -o $@ $(LDFLAGS) $(LDADD) $(FFTWLIB) |
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|
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shaperCGI$(EXE) : $(SHAPERCGI_OBJS) |
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$(CXX) $(CFLAGS) $(SHAPERCGI_OBJS) -o $@ $(LDFLAGS) $(LDADD) $(FFTWLIB) $(CGICCLIB) |
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|
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visualizer$(EXE) : $(VISUALIZER_OBJS) |
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$(CXX) $(CFLAGS) $(VISUALIZER_OBJS) -o $@ $(LDFLAGS) $(LDADD) |
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|
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install : $(SHAPER) $(VISUALIZER) $(SHAPERCGI) |
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$(MKINSTALLDIRS) $(SHAPES_HOME)/bin |
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$(INSTALL_PROGRAM) -s $(SHAPER) $(SHAPES_HOME)/bin/$(SHAPER) |
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$(INSTALL_PROGRAM) -s $(SHAPERCGI) $(SHAPES_HOME)/bin/$(SHAPERCGI) |
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$(INSTALL_PROGRAM) -s $(VISUALIZER) $(SHAPES_HOME)/bin/$(VISUALIZER) |
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$(MKINSTALLDIRS) $(VDW_PARAM_DIR) |
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for i in $(VDW_FILES); do \ |
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echo "Installing $$i in $(VDW_PARAM_DIR)\n"; \ |
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$(INSTALL_DATA) $$i $(VDW_PARAM_DIR)/$$i; \ |
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done |
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|
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|
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.PHONY : clean |
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|
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clean : dummy |
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for i in $(SUBDIRS); do \ |
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(cd $$i; $(RM) *.o *.mod) || exit 1; \ |
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done |
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$(RM) shaper visualizer *.o *.mod *~ Make.temp |
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|
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distclean : dummy |
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for i in $(SUBDIRS); do \ |
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(cd $$i; $(RM) *.o *.mod) || exit 1; \ |
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done |
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$(RM) shaper visualizer *.o *.mod *~ Make.temp |
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depend : Make.dep |
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|
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Make.dep : |
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echo "Only C dependencies are made automagically!" |
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echo "# DO NOT DELETE THIS LINE - used by make depend" > Make.dep |
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$(CC) $(DEPFLAGS) -MM $(SHAPER_C_SRCS) $(VISUALIZER_C_SRCS) $(SHAPERCGI_C_SRCS) \ |
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| sed 's/\.o:/\$$(O)\ :/g' > Make.temp |
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$(CXX) $(DEPFLAGS) -MM $(SHAPER_CXX_SRCS) $(VISUALIZER_CXX_SRCS) $(SHAPERCGI_CXX_SRCS) \ |
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| sed 's/\.o:/\$$(O)\ :/g' >> Make.temp |
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cat Make.temp | sed 's/^[a-zA-Z0-9]/obj\/&/g' >> Make.dep |
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$(RM) Make.temp |
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|
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install : dummy |
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|
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links : dummy |
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|
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tests : dummy |
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|
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dummy : |
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|
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include Make.dep |
