4 |
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#include "simError.h" |
5 |
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6 |
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|
7 |
< |
Lattice::Lattice(int latticeType, double latticeSpacing){ |
7 |
> |
Lattice::Lattice(int latticeType, double latticeParameter){ |
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int hasError; |
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|
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latticePosX = NULL; |
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latticePosY = NULL; |
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latticePosZ = NULL; |
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|
14 |
+ |
startX = 0.0; |
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+ |
startY = 0.0; |
16 |
+ |
startZ = 0.0; |
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|
18 |
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switch(latticeType){ |
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|
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case FCC_LATTICE_TYPE: |
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< |
hasError = createFccLattice(latticeSpacing); |
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> |
hasError = createFccLattice(latticeParameter); |
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break; |
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|
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case BCC_LATTICE_TYPE: |
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< |
hasError = createBccLattice(latticeSpacing); |
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hasError = createBccLattice(latticeParameter); |
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break; |
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|
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case HCP_LATTICE_TYPE: |
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< |
hasError = createHcpLattice(latticeSpacing); |
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> |
hasError = createHcpLattice(latticeParameter); |
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break; |
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|
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case HCPWATER_LATTICE_TYPE: |
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< |
hasError = createHcpWaterLattice(latticeSpacing); |
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> |
hasError = createHcpWaterLattice(latticeParameter); |
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break; |
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|
36 |
+ |
case ORTHORHOMBIC_LATTICE_TYPE: |
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hasError = createFccLattice(latticeParameter); |
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break; |
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|
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|
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default: |
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< |
//simerror here..... |
42 |
> |
//simerror here..... |
43 |
> |
; |
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> |
} |
45 |
> |
|
46 |
> |
latticePosX = new double[nCellSites]; |
47 |
> |
latticePosY = new double[nCellSites]; |
48 |
> |
latticePosZ = new double[nCellSites]; |
49 |
> |
|
50 |
> |
return; |
51 |
> |
} |
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|
53 |
< |
latticePosX = new double[nCellSites]; |
54 |
< |
latticePosY = new double[nCellSites]; |
55 |
< |
latticePosZ = new double[nCellSites]; |
53 |
> |
Lattice::Lattice(int latticeType, double latticeParameters[3]){ |
54 |
> |
int hasError; |
55 |
> |
|
56 |
> |
latticePosX = NULL; |
57 |
> |
latticePosY = NULL; |
58 |
> |
latticePosZ = NULL; |
59 |
> |
|
60 |
> |
startX = 0.0; |
61 |
> |
startY = 0.0; |
62 |
> |
startZ = 0.0; |
63 |
> |
|
64 |
> |
switch(latticeType){ |
65 |
> |
|
66 |
> |
case ORTHORHOMBIC_LATTICE_TYPE: |
67 |
> |
hasError = createOrthorhombicLattice(latticeParameters); |
68 |
> |
break; |
69 |
> |
|
70 |
> |
|
71 |
> |
default: |
72 |
> |
//simerror here..... |
73 |
> |
; |
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} |
75 |
+ |
|
76 |
+ |
latticePosX = new double[nCellSites]; |
77 |
+ |
latticePosY = new double[nCellSites]; |
78 |
+ |
latticePosZ = new double[nCellSites]; |
79 |
+ |
|
80 |
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return; |
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} |
82 |
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|
88 |
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} |
89 |
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|
90 |
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|
91 |
< |
int Lattice::createFccLattice(double latticeSpacing){ |
91 |
> |
int Lattice::createFccLattice(double latticeParameter){ |
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double cell2; |
93 |
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double rroot3; |
94 |
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|
95 |
< |
cell2 = 0.5 * latticeSpacing; |
95 |
> |
cellLengthX = latticeParameter; |
96 |
> |
cellLengthY = latticeParameter; |
97 |
> |
cellLengthZ = latticeParameter; |
98 |
> |
|
99 |
> |
cell2 = 0.5 * latticeParameter; |
100 |
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rroot3 = 1.0 / sqrt(3.0); |
101 |
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|
102 |
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nCellSites = 4; |
137 |
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thisUnitCell.sx[3] = cell2; |
138 |
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thisUnitCell.sy[3] = 0.0; |
139 |
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thisUnitCell.sz[3] = cell2; |
140 |
+ |
thisUnitCell.s_ex[3] = -rroot3; |
141 |
+ |
thisUnitCell.s_ey[3] = -rroot3; |
142 |
+ |
thisUnitCell.s_ez[3] = rroot3; |
143 |
+ |
|
144 |
+ |
return 0; |
145 |
+ |
} |
146 |
+ |
|
147 |
+ |
|
148 |
+ |
int Lattice::createOrthorhombicLattice(double latticeParameters[3]){ |
149 |
+ |
double cell2; |
150 |
+ |
double rroot3; |
151 |
+ |
|
152 |
+ |
cellLengthX = latticeParameter[0]; |
153 |
+ |
cellLengthY = latticeParameter[1]; |
154 |
+ |
cellLengthZ = latticeParameter[2]; |
155 |
+ |
|
156 |
+ |
cellx2 = 0.5 * latticeParameter[0]; |
157 |
+ |
cellx2 = 0.5 * latticeParameter[1]; |
158 |
+ |
cellx2 = 0.5 * latticeParameter[2]; |
159 |
+ |
rroot3 = 1.0 / sqrt(3.0); |
160 |
+ |
|
161 |
+ |
nCellSites = 4; |
162 |
+ |
// create new unit cells |
163 |
+ |
thisUnitCell.sx = new double[nCellSites]; |
164 |
+ |
thisUnitCell.sy = new double[nCellSites]; |
165 |
+ |
thisUnitCell.sz = new double[nCellSites]; |
166 |
+ |
thisUnitCell.s_ex = new double[nCellSites]; |
167 |
+ |
thisUnitCell.s_ey = new double[nCellSites]; |
168 |
+ |
thisUnitCell.s_ez = new double[nCellSites]; |
169 |
+ |
|
170 |
+ |
// add members to each unit cell |
171 |
+ |
// Molecule 1 |
172 |
+ |
thisUnitCell.sx[0] = 0.0; |
173 |
+ |
thisUnitCell.sy[0] = 0.0; |
174 |
+ |
thisUnitCell.sz[0] = 0.0; |
175 |
+ |
thisUnitCell.s_ex[0] = rroot3; |
176 |
+ |
thisUnitCell.s_ey[0] = rroot3; |
177 |
+ |
thisUnitCell.s_ez[0] = rroot3; |
178 |
+ |
|
179 |
+ |
// Molecule 2 |
180 |
+ |
thisUnitCell.sx[1] = 0.0; |
181 |
+ |
thisUnitCell.sy[1] = celly2; |
182 |
+ |
thisUnitCell.sz[1] = cellz2; |
183 |
+ |
thisUnitCell.s_ex[1] = -rroot3; |
184 |
+ |
thisUnitCell.s_ey[1] = rroot3; |
185 |
+ |
thisUnitCell.s_ez[1] = -rroot3; |
186 |
+ |
|
187 |
+ |
// Molecule 3 |
188 |
+ |
thisUnitCell.sx[2] = cellx2; |
189 |
+ |
thisUnitCell.sy[2] = celly2; |
190 |
+ |
thisUnitCell.sz[2] = 0.0; |
191 |
+ |
thisUnitCell.s_ex[2] = rroot3; |
192 |
+ |
thisUnitCell.s_ey[2] = -rroot3; |
193 |
+ |
thisUnitCell.s_ez[2] = -rroot3; |
194 |
+ |
|
195 |
+ |
// Molecule 4 |
196 |
+ |
thisUnitCell.sx[3] = cellx2; |
197 |
+ |
thisUnitCell.sy[3] = 0.0; |
198 |
+ |
thisUnitCell.sz[3] = cellz2; |
199 |
|
thisUnitCell.s_ex[3] = -rroot3; |
200 |
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thisUnitCell.s_ey[3] = -rroot3; |
201 |
|
thisUnitCell.s_ez[3] = rroot3; |
205 |
|
|
206 |
|
|
207 |
|
// Body centered cubic lattice |
208 |
< |
int Lattice::createBccLattice(double latticeSpacing){ |
208 |
> |
int Lattice::createBccLattice(double latticeParameter){ |
209 |
|
return 0; |
210 |
|
} |
211 |
|
|
212 |
|
|
213 |
|
// Standard HCP lattice |
214 |
< |
int Lattice::createHcpLattice(double latticeSpacing){ |
214 |
> |
int Lattice::createHcpLattice(double latticeParameter){ |
215 |
|
return 0; |
216 |
|
} |
217 |
|
|
218 |
|
// HCP contains tetrahedral sites for waters |
219 |
< |
int Lattice::createHcpWaterLattice(double latticeSpacing){ |
219 |
> |
int Lattice::createHcpWaterLattice(double latticeParameter){ |
220 |
> |
|
221 |
> |
return 0; |
222 |
> |
|
223 |
|
double rroot3; |
224 |
|
double cell; |
225 |
|
double cell2; |
241 |
|
thisUnitCell.s_ez = new double[nCellSites]; |
242 |
|
|
243 |
|
rroot3 = 1.0 / sqrt(3.0); |
244 |
< |
cell = latticeSpacing; |
244 |
> |
cell = latticeParameter; |
245 |
|
cell2 = 0.5 * cell; |
246 |
|
cell4 = 0.25 * cell; |
247 |
|
cell16 = cell / 6.0; |
355 |
|
|
356 |
|
//Returns lattice points when called repeatedly |
357 |
|
int Lattice::getLatticePoints(double** thePosX, double** thePosY, |
358 |
< |
double** thePosZ, |
359 |
< |
int ix, int iy, int iz){ |
358 |
> |
double** thePosZ, |
359 |
> |
int ix, int iy, int iz){ |
360 |
|
|
361 |
|
int iref; |
362 |
|
|
363 |
|
for( iref=0;iref < nCellSites;iref++){ |
364 |
|
|
365 |
< |
latticePosX[iref] = thisUnitCell.sx[iref] + |
366 |
< |
cellLength * (double( ix ) - 0.5); |
367 |
< |
latticePosY[iref] = thisUnitCell.sy[iref] + |
368 |
< |
cellLength * (double( iy ) - 0.5); |
369 |
< |
latticePosZ[iref] = thisUnitCell.sz[iref] + |
370 |
< |
cellLength * (double( iz ) - 0.5); |
365 |
> |
latticePosX[iref] = startX + thisUnitCell.sx[iref] + |
366 |
> |
cellLengthX * (double( ix ) - 0.5); |
367 |
> |
latticePosY[iref] = startY + thisUnitCell.sy[iref] + |
368 |
> |
cellLengthY * (double( iy ) - 0.5); |
369 |
> |
latticePosZ[iref] = startZ + thisUnitCell.sz[iref] + |
370 |
> |
cellLengthZ * (double( iz ) - 0.5); |
371 |
|
|
372 |
|
} |
373 |
|
|