| 11 | 
  | 
  latticePosY = NULL; | 
| 12 | 
  | 
  latticePosZ = NULL; | 
| 13 | 
  | 
 | 
| 14 | 
+ | 
  startX = 0.0; | 
| 15 | 
+ | 
  startY = 0.0; | 
| 16 | 
+ | 
  startZ = 0.0; | 
| 17 | 
  | 
 | 
| 18 | 
  | 
  switch(latticeType){ | 
| 19 | 
  | 
     | 
| 33 | 
  | 
    hasError = createHcpWaterLattice(latticeParameter); | 
| 34 | 
  | 
    break; | 
| 35 | 
  | 
 | 
| 36 | 
+ | 
  case ORTHORHOMBIC_LATTICE_TYPE: | 
| 37 | 
+ | 
    hasError = createFccLattice(latticeParameter); | 
| 38 | 
+ | 
    break; | 
| 39 | 
+ | 
 | 
| 40 | 
+ | 
 | 
| 41 | 
  | 
  default: | 
| 42 | 
  | 
    //simerror here..... | 
| 43 | 
  | 
    ; | 
| 50 | 
  | 
  return; | 
| 51 | 
  | 
} | 
| 52 | 
  | 
 | 
| 53 | 
+ | 
Lattice::Lattice(int latticeType, double latticeParameters[3]){ | 
| 54 | 
+ | 
  int hasError; | 
| 55 | 
  | 
 | 
| 56 | 
+ | 
  latticePosX = NULL; | 
| 57 | 
+ | 
  latticePosY = NULL; | 
| 58 | 
+ | 
  latticePosZ = NULL; | 
| 59 | 
+ | 
 | 
| 60 | 
+ | 
  startX = 0.0; | 
| 61 | 
+ | 
  startY = 0.0; | 
| 62 | 
+ | 
  startZ = 0.0; | 
| 63 | 
+ | 
 | 
| 64 | 
+ | 
  switch(latticeType){ | 
| 65 | 
+ | 
     | 
| 66 | 
+ | 
  case ORTHORHOMBIC_LATTICE_TYPE: | 
| 67 | 
+ | 
    hasError = createOrthorhombicLattice(latticeParameters); | 
| 68 | 
+ | 
    break; | 
| 69 | 
+ | 
 | 
| 70 | 
+ | 
 | 
| 71 | 
+ | 
  default: | 
| 72 | 
+ | 
    //simerror here..... | 
| 73 | 
+ | 
    ; | 
| 74 | 
+ | 
  } | 
| 75 | 
+ | 
   | 
| 76 | 
+ | 
  latticePosX = new double[nCellSites]; | 
| 77 | 
+ | 
  latticePosY = new double[nCellSites]; | 
| 78 | 
+ | 
  latticePosZ = new double[nCellSites]; | 
| 79 | 
+ | 
   | 
| 80 | 
+ | 
  return; | 
| 81 | 
+ | 
} | 
| 82 | 
+ | 
 | 
| 83 | 
+ | 
 | 
| 84 | 
  | 
Lattice::~Lattice(void){ | 
| 85 | 
  | 
  if (latticePosX != NULL) delete[] latticePosX; | 
| 86 | 
  | 
  if (latticePosY != NULL) delete[] latticePosY; | 
| 92 | 
  | 
   double cell2; | 
| 93 | 
  | 
   double rroot3; | 
| 94 | 
  | 
    | 
| 95 | 
< | 
   cellLength = latticeParameter; | 
| 95 | 
> | 
   cellLengthX = latticeParameter; | 
| 96 | 
> | 
   cellLengthY = latticeParameter; | 
| 97 | 
> | 
   cellLengthZ = latticeParameter; | 
| 98 | 
  | 
 | 
| 99 | 
  | 
   cell2  = 0.5 * latticeParameter; | 
| 100 | 
  | 
   rroot3 = 1.0 / sqrt(3.0); | 
| 145 | 
  | 
 } | 
| 146 | 
  | 
 | 
| 147 | 
  | 
 | 
| 148 | 
+ | 
 int Lattice::createOrthorhombicLattice(double latticeParameters[3]){ | 
| 149 | 
+ | 
   double cellx2, celly2, cellz2; | 
| 150 | 
+ | 
   double rroot3; | 
| 151 | 
+ | 
    | 
| 152 | 
+ | 
   cellLengthX = latticeParameters[0]; | 
| 153 | 
+ | 
   cellLengthY = latticeParameters[1]; | 
| 154 | 
+ | 
   cellLengthZ = latticeParameters[2]; | 
| 155 | 
+ | 
 | 
| 156 | 
+ | 
   cellx2  = 0.5 * latticeParameters[0]; | 
| 157 | 
+ | 
   celly2  = 0.5 * latticeParameters[1]; | 
| 158 | 
+ | 
   cellz2  = 0.5 * latticeParameters[2]; | 
| 159 | 
+ | 
   rroot3 = 1.0 / sqrt(3.0); | 
| 160 | 
+ | 
 | 
| 161 | 
+ | 
   nCellSites = 4; | 
| 162 | 
+ | 
   // create new unit cells | 
| 163 | 
+ | 
   thisUnitCell.sx   = new double[nCellSites]; | 
| 164 | 
+ | 
   thisUnitCell.sy   = new double[nCellSites]; | 
| 165 | 
+ | 
   thisUnitCell.sz   = new double[nCellSites]; | 
| 166 | 
+ | 
   thisUnitCell.s_ex = new double[nCellSites]; | 
| 167 | 
+ | 
   thisUnitCell.s_ey = new double[nCellSites]; | 
| 168 | 
+ | 
   thisUnitCell.s_ez = new double[nCellSites]; | 
| 169 | 
+ | 
 | 
| 170 | 
+ | 
   // add members to each unit cell | 
| 171 | 
+ | 
   // Molecule 1 | 
| 172 | 
+ | 
   thisUnitCell.sx[0]   = 0.0; | 
| 173 | 
+ | 
   thisUnitCell.sy[0]   = 0.0; | 
| 174 | 
+ | 
   thisUnitCell.sz[0]   = 0.0; | 
| 175 | 
+ | 
   thisUnitCell.s_ex[0] = rroot3; | 
| 176 | 
+ | 
   thisUnitCell.s_ey[0] = rroot3; | 
| 177 | 
+ | 
   thisUnitCell.s_ez[0] = rroot3; | 
| 178 | 
+ | 
 | 
| 179 | 
+ | 
     // Molecule 2 | 
| 180 | 
+ | 
   thisUnitCell.sx[1]   = 0.0; | 
| 181 | 
+ | 
   thisUnitCell.sy[1]   = celly2; | 
| 182 | 
+ | 
   thisUnitCell.sz[1]   = cellz2; | 
| 183 | 
+ | 
   thisUnitCell.s_ex[1] = -rroot3; | 
| 184 | 
+ | 
   thisUnitCell.s_ey[1] = rroot3; | 
| 185 | 
+ | 
   thisUnitCell.s_ez[1] = -rroot3; | 
| 186 | 
+ | 
      | 
| 187 | 
+ | 
     // Molecule 3 | 
| 188 | 
+ | 
   thisUnitCell.sx[2]   = cellx2;  | 
| 189 | 
+ | 
   thisUnitCell.sy[2]   = celly2; | 
| 190 | 
+ | 
   thisUnitCell.sz[2]   = 0.0; | 
| 191 | 
+ | 
   thisUnitCell.s_ex[2] = rroot3; | 
| 192 | 
+ | 
   thisUnitCell.s_ey[2] = -rroot3; | 
| 193 | 
+ | 
   thisUnitCell.s_ez[2] = -rroot3; | 
| 194 | 
+ | 
 | 
| 195 | 
+ | 
     // Molecule 4 | 
| 196 | 
+ | 
   thisUnitCell.sx[3]   = cellx2; | 
| 197 | 
+ | 
   thisUnitCell.sy[3]   = 0.0; | 
| 198 | 
+ | 
   thisUnitCell.sz[3]   = cellz2; | 
| 199 | 
+ | 
   thisUnitCell.s_ex[3] = -rroot3; | 
| 200 | 
+ | 
   thisUnitCell.s_ey[3] = -rroot3; | 
| 201 | 
+ | 
   thisUnitCell.s_ez[3] = rroot3; | 
| 202 | 
+ | 
 | 
| 203 | 
+ | 
     return 0; | 
| 204 | 
+ | 
 } | 
| 205 | 
+ | 
 | 
| 206 | 
+ | 
 | 
| 207 | 
  | 
 // Body centered cubic lattice | 
| 208 | 
  | 
 int Lattice::createBccLattice(double latticeParameter){ | 
| 209 | 
  | 
   return 0; | 
| 362 | 
  | 
   | 
| 363 | 
  | 
   for( iref=0;iref < nCellSites;iref++){ | 
| 364 | 
  | 
 | 
| 365 | 
< | 
     latticePosX[iref] = thisUnitCell.sx[iref] +  | 
| 366 | 
< | 
       cellLength * (double( ix ) - 0.5); | 
| 367 | 
< | 
     latticePosY[iref] = thisUnitCell.sy[iref] +  | 
| 368 | 
< | 
       cellLength * (double( iy ) - 0.5); | 
| 369 | 
< | 
     latticePosZ[iref] = thisUnitCell.sz[iref] +  | 
| 370 | 
< | 
       cellLength * (double( iz ) - 0.5); | 
| 365 | 
> | 
     latticePosX[iref] = startX + thisUnitCell.sx[iref] +  | 
| 366 | 
> | 
       cellLengthX * (double( ix ) - 0.5); | 
| 367 | 
> | 
     latticePosY[iref] = startY + thisUnitCell.sy[iref] +  | 
| 368 | 
> | 
       cellLengthY * (double( iy ) - 0.5); | 
| 369 | 
> | 
     latticePosZ[iref] = startZ + thisUnitCell.sz[iref] +  | 
| 370 | 
> | 
       cellLengthZ * (double( iz ) - 0.5); | 
| 371 | 
  | 
      | 
| 372 | 
  | 
   } | 
| 373 | 
  | 
 |