| 11 |
|
latticePosY = NULL; |
| 12 |
|
latticePosZ = NULL; |
| 13 |
|
|
| 14 |
+ |
startX = 0.0; |
| 15 |
+ |
startY = 0.0; |
| 16 |
+ |
startZ = 0.0; |
| 17 |
|
|
| 18 |
|
switch(latticeType){ |
| 19 |
|
|
| 33 |
|
hasError = createHcpWaterLattice(latticeParameter); |
| 34 |
|
break; |
| 35 |
|
|
| 36 |
+ |
case ORTHORHOMBIC_LATTICE_TYPE: |
| 37 |
+ |
hasError = createFccLattice(latticeParameter); |
| 38 |
+ |
break; |
| 39 |
+ |
|
| 40 |
+ |
|
| 41 |
|
default: |
| 42 |
|
//simerror here..... |
| 43 |
|
; |
| 50 |
|
return; |
| 51 |
|
} |
| 52 |
|
|
| 53 |
+ |
Lattice::Lattice(int latticeType, double latticeParameters[3]){ |
| 54 |
+ |
int hasError; |
| 55 |
|
|
| 56 |
+ |
latticePosX = NULL; |
| 57 |
+ |
latticePosY = NULL; |
| 58 |
+ |
latticePosZ = NULL; |
| 59 |
+ |
|
| 60 |
+ |
startX = 0.0; |
| 61 |
+ |
startY = 0.0; |
| 62 |
+ |
startZ = 0.0; |
| 63 |
+ |
|
| 64 |
+ |
switch(latticeType){ |
| 65 |
+ |
|
| 66 |
+ |
case ORTHORHOMBIC_LATTICE_TYPE: |
| 67 |
+ |
hasError = createOrthorhombicLattice(latticeParameters); |
| 68 |
+ |
break; |
| 69 |
+ |
|
| 70 |
+ |
|
| 71 |
+ |
default: |
| 72 |
+ |
//simerror here..... |
| 73 |
+ |
; |
| 74 |
+ |
} |
| 75 |
+ |
|
| 76 |
+ |
latticePosX = new double[nCellSites]; |
| 77 |
+ |
latticePosY = new double[nCellSites]; |
| 78 |
+ |
latticePosZ = new double[nCellSites]; |
| 79 |
+ |
|
| 80 |
+ |
return; |
| 81 |
+ |
} |
| 82 |
+ |
|
| 83 |
+ |
|
| 84 |
|
Lattice::~Lattice(void){ |
| 85 |
|
if (latticePosX != NULL) delete[] latticePosX; |
| 86 |
|
if (latticePosY != NULL) delete[] latticePosY; |
| 92 |
|
double cell2; |
| 93 |
|
double rroot3; |
| 94 |
|
|
| 95 |
< |
cellLength = latticeParameter; |
| 95 |
> |
cellLengthX = latticeParameter; |
| 96 |
> |
cellLengthY = latticeParameter; |
| 97 |
> |
cellLengthZ = latticeParameter; |
| 98 |
|
|
| 99 |
|
cell2 = 0.5 * latticeParameter; |
| 100 |
|
rroot3 = 1.0 / sqrt(3.0); |
| 145 |
|
} |
| 146 |
|
|
| 147 |
|
|
| 148 |
+ |
int Lattice::createOrthorhombicLattice(double latticeParameters[3]){ |
| 149 |
+ |
double cell2; |
| 150 |
+ |
double rroot3; |
| 151 |
+ |
|
| 152 |
+ |
cellLengthX = latticeParameter[0]; |
| 153 |
+ |
cellLengthY = latticeParameter[1]; |
| 154 |
+ |
cellLengthZ = latticeParameter[2]; |
| 155 |
+ |
|
| 156 |
+ |
cellx2 = 0.5 * latticeParameter[0]; |
| 157 |
+ |
cellx2 = 0.5 * latticeParameter[1]; |
| 158 |
+ |
cellx2 = 0.5 * latticeParameter[2]; |
| 159 |
+ |
rroot3 = 1.0 / sqrt(3.0); |
| 160 |
+ |
|
| 161 |
+ |
nCellSites = 4; |
| 162 |
+ |
// create new unit cells |
| 163 |
+ |
thisUnitCell.sx = new double[nCellSites]; |
| 164 |
+ |
thisUnitCell.sy = new double[nCellSites]; |
| 165 |
+ |
thisUnitCell.sz = new double[nCellSites]; |
| 166 |
+ |
thisUnitCell.s_ex = new double[nCellSites]; |
| 167 |
+ |
thisUnitCell.s_ey = new double[nCellSites]; |
| 168 |
+ |
thisUnitCell.s_ez = new double[nCellSites]; |
| 169 |
+ |
|
| 170 |
+ |
// add members to each unit cell |
| 171 |
+ |
// Molecule 1 |
| 172 |
+ |
thisUnitCell.sx[0] = 0.0; |
| 173 |
+ |
thisUnitCell.sy[0] = 0.0; |
| 174 |
+ |
thisUnitCell.sz[0] = 0.0; |
| 175 |
+ |
thisUnitCell.s_ex[0] = rroot3; |
| 176 |
+ |
thisUnitCell.s_ey[0] = rroot3; |
| 177 |
+ |
thisUnitCell.s_ez[0] = rroot3; |
| 178 |
+ |
|
| 179 |
+ |
// Molecule 2 |
| 180 |
+ |
thisUnitCell.sx[1] = 0.0; |
| 181 |
+ |
thisUnitCell.sy[1] = celly2; |
| 182 |
+ |
thisUnitCell.sz[1] = cellz2; |
| 183 |
+ |
thisUnitCell.s_ex[1] = -rroot3; |
| 184 |
+ |
thisUnitCell.s_ey[1] = rroot3; |
| 185 |
+ |
thisUnitCell.s_ez[1] = -rroot3; |
| 186 |
+ |
|
| 187 |
+ |
// Molecule 3 |
| 188 |
+ |
thisUnitCell.sx[2] = cellx2; |
| 189 |
+ |
thisUnitCell.sy[2] = celly2; |
| 190 |
+ |
thisUnitCell.sz[2] = 0.0; |
| 191 |
+ |
thisUnitCell.s_ex[2] = rroot3; |
| 192 |
+ |
thisUnitCell.s_ey[2] = -rroot3; |
| 193 |
+ |
thisUnitCell.s_ez[2] = -rroot3; |
| 194 |
+ |
|
| 195 |
+ |
// Molecule 4 |
| 196 |
+ |
thisUnitCell.sx[3] = cellx2; |
| 197 |
+ |
thisUnitCell.sy[3] = 0.0; |
| 198 |
+ |
thisUnitCell.sz[3] = cellz2; |
| 199 |
+ |
thisUnitCell.s_ex[3] = -rroot3; |
| 200 |
+ |
thisUnitCell.s_ey[3] = -rroot3; |
| 201 |
+ |
thisUnitCell.s_ez[3] = rroot3; |
| 202 |
+ |
|
| 203 |
+ |
return 0; |
| 204 |
+ |
} |
| 205 |
+ |
|
| 206 |
+ |
|
| 207 |
|
// Body centered cubic lattice |
| 208 |
|
int Lattice::createBccLattice(double latticeParameter){ |
| 209 |
|
return 0; |
| 362 |
|
|
| 363 |
|
for( iref=0;iref < nCellSites;iref++){ |
| 364 |
|
|
| 365 |
< |
latticePosX[iref] = thisUnitCell.sx[iref] + |
| 366 |
< |
cellLength * (double( ix ) - 0.5); |
| 367 |
< |
latticePosY[iref] = thisUnitCell.sy[iref] + |
| 368 |
< |
cellLength * (double( iy ) - 0.5); |
| 369 |
< |
latticePosZ[iref] = thisUnitCell.sz[iref] + |
| 370 |
< |
cellLength * (double( iz ) - 0.5); |
| 365 |
> |
latticePosX[iref] = startX + thisUnitCell.sx[iref] + |
| 366 |
> |
cellLengthX * (double( ix ) - 0.5); |
| 367 |
> |
latticePosY[iref] = startY + thisUnitCell.sy[iref] + |
| 368 |
> |
cellLengthY * (double( iy ) - 0.5); |
| 369 |
> |
latticePosZ[iref] = startZ + thisUnitCell.sz[iref] + |
| 370 |
> |
cellLengthZ * (double( iz ) - 0.5); |
| 371 |
|
|
| 372 |
|
} |
| 373 |
|
|