24 |
|
|
25 |
|
char forceField[STR_LENGTH]; |
26 |
|
char ensemble[STR_LENGTH]; |
27 |
+ |
|
28 |
+ |
char lattice[STR_LENGTH]; |
29 |
+ |
|
30 |
|
double targetTemp; |
31 |
|
double dt; |
32 |
|
double runTime; |
35 |
|
int totNmol; |
36 |
|
int* componentsNmol; |
37 |
|
|
38 |
+ |
|
39 |
+ |
|
40 |
|
MoleculeStamp** compStamps; |
41 |
|
|
42 |
|
int havePressure; |
49 |
|
double tauThermostat; |
50 |
|
double Qmass; |
51 |
|
|
52 |
+ |
int latticeType; // Type of lattice corresponting to the |
53 |
+ |
// types defined in latticeBuilder.hpp |
54 |
+ |
int isRandomParticle; // Build a random nanoparticle. |
55 |
+ |
int hasVacancies; // Build nanoparticle with vacancies. |
56 |
+ |
int buildCoreShell; // logical to build a core-shell particle |
57 |
+ |
|
58 |
+ |
double soluteX; // more fraction of solute in random nanoparticle |
59 |
+ |
double paticleRadius; // nanoparticle total radius |
60 |
+ |
double coreRadius; // nanoparticle core radius |
61 |
+ |
double shellRadius; // nanoparticle shell radius (unused) |
62 |
+ |
double latticeSpacing; // lattice spacing for lattice in builder |
63 |
+ |
double vacancyRadius; // Radius surrounding the core-shell interface to |
64 |
+ |
// build vacancies in. |
65 |
+ |
double vacancyFraction; // Fraction of interface region to be converted to vacancies. |
66 |
+ |
|
67 |
+ |
|
68 |
|
char lipidName[STR_LENGTH]; |
69 |
|
char waterName[STR_LENGTH]; |
70 |
|
|
71 |
|
char coreName[STR_LENGTH]; |
72 |
|
char shellName[STR_LENGTH]; |
73 |
|
|
74 |
+ |
|
75 |
+ |
|
76 |
|
} bassInfo; |
77 |
|
|
78 |
|
|