| 96 |
|
// parse long word options |
| 97 |
|
|
| 98 |
|
if( !strcmp( argV[i], "--gofr" ) ){ |
| 99 |
< |
|
| 99 |
> |
|
| 100 |
|
i++; |
| 101 |
|
if( i>=argC ){ |
| 102 |
|
sprintf( painCave.errMsg, |
| 124 |
|
havePairCorrs = true; |
| 125 |
|
} |
| 126 |
|
|
| 127 |
+ |
else if( !strcmp( argV[i], "--gofrTheta" ) ){ |
| 128 |
+ |
|
| 129 |
+ |
i++; |
| 130 |
+ |
if( i>=argC ){ |
| 131 |
+ |
sprintf( painCave.errMsg, |
| 132 |
+ |
"\n" |
| 133 |
+ |
"not enough arguments for --gofrTheta\n"); |
| 134 |
+ |
usage(); |
| 135 |
+ |
painCave.isFatal = 1; |
| 136 |
+ |
simError(); |
| 137 |
+ |
} |
| 138 |
+ |
pair1 = argV[i]; |
| 139 |
+ |
|
| 140 |
+ |
i++; |
| 141 |
+ |
if( i>=argC ){ |
| 142 |
+ |
sprintf( painCave.errMsg, |
| 143 |
+ |
"\n" |
| 144 |
+ |
"not enough arguments for --gofrTheta\n"); |
| 145 |
+ |
usage(); |
| 146 |
+ |
painCave.isFatal = 1; |
| 147 |
+ |
simError(); |
| 148 |
+ |
} |
| 149 |
+ |
pair2 = argV[i]; |
| 150 |
+ |
|
| 151 |
+ |
pairType = gofrTheta; |
| 152 |
+ |
theList.push_back(PairCorrList( pairType, pair1, pair2 )); |
| 153 |
+ |
havePairCorrs = true; |
| 154 |
+ |
} |
| 155 |
+ |
|
| 156 |
+ |
else if( !strcmp( argV[i], "--gofrOmega" ) ){ |
| 157 |
+ |
|
| 158 |
+ |
i++; |
| 159 |
+ |
if( i>=argC ){ |
| 160 |
+ |
sprintf( painCave.errMsg, |
| 161 |
+ |
"\n" |
| 162 |
+ |
"not enough arguments for --gofrOmega\n"); |
| 163 |
+ |
usage(); |
| 164 |
+ |
painCave.isFatal = 1; |
| 165 |
+ |
simError(); |
| 166 |
+ |
} |
| 167 |
+ |
pair1 = argV[i]; |
| 168 |
+ |
|
| 169 |
+ |
i++; |
| 170 |
+ |
if( i>=argC ){ |
| 171 |
+ |
sprintf( painCave.errMsg, |
| 172 |
+ |
"\n" |
| 173 |
+ |
"not enough arguments for --gofrOmega\n"); |
| 174 |
+ |
usage(); |
| 175 |
+ |
painCave.isFatal = 1; |
| 176 |
+ |
simError(); |
| 177 |
+ |
} |
| 178 |
+ |
pair2 = argV[i]; |
| 179 |
+ |
|
| 180 |
+ |
pairType = gofrOmega; |
| 181 |
+ |
theList.push_back(PairCorrList( pairType, pair1, pair2 )); |
| 182 |
+ |
havePairCorrs = true; |
| 183 |
+ |
} |
| 184 |
+ |
|
| 185 |
|
else if( !strcmp( argV[i], "--version") ){ |
| 186 |
|
|
| 187 |
|
printf("\n" |
| 441 |
|
nFrames ); |
| 442 |
|
fflush(stdout); |
| 443 |
|
|
| 444 |
< |
infoArray = new SimInfo[nFrames]; |
| 444 |
> |
infoArray = new SimInfo; |
| 445 |
|
|
| 446 |
|
printf("Parsing the bass file, and initializing the " |
| 447 |
|
"Simulation Frames..." ); |
| 448 |
|
fflush(stdout); |
| 449 |
|
|
| 450 |
|
startMe = new SimSetup(); |
| 451 |
< |
startMe->setSimInfo( infoArray, nFrames ); |
| 451 |
> |
startMe->setSimInfo( infoArray ); |
| 452 |
> |
startMe->suspendInit(); |
| 453 |
|
startMe->parseFile( inName ); |
| 454 |
|
startMe->createSim(); |
| 455 |
|
|
| 502 |
|
"\n" |
| 503 |
|
" long:\n" |
| 504 |
|
" -----\n" |
| 505 |
< |
" --gofr <atom1> <atom2> g(r) for atom1 and atom2\n" |
| 506 |
< |
" *note: \"_ALL_\" matches all atoms\n" |
| 507 |
< |
" --version displays the version number\n" |
| 508 |
< |
" --help displays this help message.\n" |
| 505 |
> |
" --gofr <atom1> <atom2> g(r) for atom1 and atom2\n" |
| 506 |
> |
" *note: \"_ALL_\" matches all atoms\n" |
| 507 |
> |
" --gofrTheta <atom1> <atom2> g(r, theta) for atom1 and atom2\n" |
| 508 |
> |
" *note: \"_ALL_\" matches all atoms\n" |
| 509 |
> |
" --gofrOmega <atom1> <atom2> g(r, omega) for atom1 and atom2\n" |
| 510 |
> |
" *note: \"_ALL_\" matches all atoms\n" |
| 511 |
> |
" --version displays the version number\n" |
| 512 |
> |
" --help displays this help message.\n" |
| 513 |
|
|
| 514 |
|
"\n" |
| 515 |
|
"\n", |