| 1 | #ifndef IS_MPI | 
| 2 | #include <iostream> | 
| 3 | #include <fstream> | 
| 4 | #include <cstdlib> | 
| 5 | #include <cmath> | 
| 6 | #include <cstring> | 
| 7 |  | 
| 8 | #ifdef PROFILE | 
| 9 | #include "mdProfile.hpp" | 
| 10 | #endif // PROFILE | 
| 11 |  | 
| 12 | #include "simError.h" | 
| 13 | #include "SimSetup.hpp" | 
| 14 | #include "SimInfo.hpp" | 
| 15 | #include "Atom.hpp" | 
| 16 | #include "Integrator.hpp" | 
| 17 | #include "Thermo.hpp" | 
| 18 | #include "ReadWrite.hpp" | 
| 19 | #include "OOPSEMinimizer.hpp" | 
| 20 |  | 
| 21 | char* program_name; | 
| 22 | using namespace std; | 
| 23 |  | 
| 24 | int main(int argc,char* argv[]){ | 
| 25 |  | 
| 26 | char* in_name; | 
| 27 | SimSetup* startMe; | 
| 28 | SimInfo* entry_plug; | 
| 29 |  | 
| 30 | // first things first, all of the initializations | 
| 31 |  | 
| 32 | initSimError();           // the error handler | 
| 33 | srand48( 1337 );          // the random number generator. | 
| 34 |  | 
| 35 | #ifdef PROFILE | 
| 36 | initProfile(); | 
| 37 | #endif //profile | 
| 38 |  | 
| 39 | // check command line arguments, and set the input file | 
| 40 |  | 
| 41 | program_name = argv[0]; // save the program name in case we need it | 
| 42 |  | 
| 43 | if( argc < 2 ){ | 
| 44 | sprintf( painCave.errMsg, | 
| 45 | "Error, bass file is needed to run.\n" ); | 
| 46 | painCave.isFatal = 1; | 
| 47 | simError(); | 
| 48 | } | 
| 49 |  | 
| 50 | in_name = argv[1]; | 
| 51 |  | 
| 52 | // create the simulation objects, and get the show on the road | 
| 53 |  | 
| 54 | entry_plug = new SimInfo(); | 
| 55 | startMe = new SimSetup(); | 
| 56 |  | 
| 57 | startMe->setSimInfo( entry_plug ); | 
| 58 |  | 
| 59 | #ifdef PROFILE | 
| 60 | startProfile( pro1 ); | 
| 61 | #endif //profile | 
| 62 |  | 
| 63 | startMe->parseFile( in_name ); | 
| 64 |  | 
| 65 | #ifdef PROFILE | 
| 66 | endProfile( pro1 ); | 
| 67 |  | 
| 68 | startProfile( pro2 ); | 
| 69 | #endif //profile | 
| 70 |  | 
| 71 | startMe->createSim(); | 
| 72 | delete startMe; | 
| 73 |  | 
| 74 | #ifdef PROFILE | 
| 75 | endProfile( pro2 ); | 
| 76 |  | 
| 77 | startProfile( pro3 ); | 
| 78 | #endif //profile | 
| 79 |  | 
| 80 | if (!entry_plug->has_minimizer) | 
| 81 | entry_plug->the_integrator->integrate(); | 
| 82 | else | 
| 83 | entry_plug->the_minimizer->minimize(); | 
| 84 | #ifdef PROFILE | 
| 85 | endProfile( pro3 ); | 
| 86 |  | 
| 87 | writeProfiles(); | 
| 88 | #endif //profile | 
| 89 |  | 
| 90 | return 0 ; | 
| 91 | } | 
| 92 |  | 
| 93 | #endif |