add center of mass of the molecule and massRation into atom class
Changes for adding direct charge-charge interactions (with switching function)
Changed how cutoffs were handled from C. Now notifyCutoffs in Fortran notifies those who need the information of any changes to cutoffs.
working on adding the box matrix to everything.
This commit was generated by cvs2svn to compensate for changes in r377, which included commits to RCS files with non-trunk default branches.
New OOPSE Tree
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