OOPSE/libmdtools/WATER.cpp

#include <stdlib.h>
#include <stdio.h>
#include <string.h>

#include <iostream>
using namespace std;

#ifdef IS_MPI
#include <mpi.h>
#endif //is_mpi

#include "ForceFields.hpp"
#include "SRI.hpp"
#include "simError.h"

#include "fortranWrappers.hpp"

#ifdef IS_MPI
#include "mpiForceField.h"
#endif // is_mpi


namespace WATER_NS{

  // Declare the structures that will be passed by the parser and  MPI
  
  typedef struct{
    char name[15];
    double mass;
    double epslon;
    double sigma;
    double charge;
    int isDirectional;
    int isLJ;
    int isCharge;
    int ident;
    int last;      //  0  -> default
                   //  1  -> in MPI: tells nodes to stop listening
  } atomStruct;

  typedef struct{
    char name[15];
    double dipole;
    double w0;
    double v0;
    double v0p;
    double rl;
    double ru;
    double rlp;
    double rup;
    int isDipole;
    int isSticky;
    int last;      //  0  -> default
                   //  1  -> in MPI: tells nodes to stop listening
  } directionalStruct;

  int parseAtom( char *lineBuffer, int lineNum, atomStruct &info );
  int parseDirectional( char *lineBuffer, int lineNum, directionalStruct &info );


#ifdef IS_MPI
  
  MPI_Datatype mpiAtomStructType;
  MPI_Datatype mpiDirectionalStructType;

#endif

  class LinkedAtomType {
  public:
    LinkedAtomType(){ 
      next = NULL;
      name[0] = '\0';
    }
    ~LinkedAtomType(){ if( next != NULL ) delete next; }

    LinkedAtomType* find(char* key){ 
      if( !strcmp(name, key) ) return this;
      if( next != NULL ) return next->find(key);
      return NULL;
    }
    

    void add( atomStruct &info ){
    
      // check for duplicates
      
      if( !strcmp( info.name, name ) ){
        sprintf( painCave.errMsg,
                 "Duplicate WATER atom type \"%s\" found in "
                 "the WATER param file./n",
                 name );
        painCave.isFatal = 1;
        simError();
      }
      
      if( next != NULL ) next->add(info);
      else{
        next = new LinkedAtomType();
        strcpy(next->name, info.name);
        next->isDirectional  = info.isDirectional;
        next->isLJ     = info.isLJ;
        next->isCharge = info.isCharge;
        next->mass     = info.mass;
        next->epslon   = info.epslon;
        next->sigma    = info.sigma;
        next->charge   = info.charge;
        next->ident    = info.ident;
      }
    }

#ifdef IS_MPI
    
    void duplicate( atomStruct &info ){
      strcpy(info.name, name);
      info.isDirectional  = isDirectional;
      info.isLJ     = isLJ;
      info.isCharge = isCharge;
      info.mass     = mass;
      info.epslon   = epslon;
      info.sigma    = sigma;
      info.charge   = charge;
      info.ident    = ident;
      info.last     = 0;
    }

#endif

    char name[15];
    int isDirectional;
    int isLJ;
    int isCharge;
    double mass;
    double epslon;
    double sigma;
    double charge;
    int ident;
    LinkedAtomType* next;
  };

  class LinkedDirectionalType {
  public:
    LinkedDirectionalType(){ 
      next = NULL;
      name[0] = '\0';
    }
    ~LinkedDirectionalType(){ if( next != NULL ) delete next; }

    LinkedDirectionalType* find(char* key){ 
      if( !strcmp(name, key) ) return this;
      if( next != NULL ) return next->find(key);
      return NULL;
    }
    

    void add( directionalStruct &info ){
    
      // check for duplicates
      
      if( !strcmp( info.name, name ) ){
        sprintf( painCave.errMsg,
                 "Duplicate WATER directional type \"%s\" found in "
                 "the WATER param file./n",
                 name );
        painCave.isFatal = 1;
        simError();
      }
      
      if( next != NULL ) next->add(info);
      else{
        next = new LinkedDirectionalType();
        strcpy(next->name, info.name);
        next->isDipole = info.isDipole;
        next->isSticky = info.isSticky;
        next->dipole   = info.dipole;
        next->w0       = info.w0;
        next->v0       = info.v0;
        next->v0p      = info.v0p;
        next->rl       = info.rl;
        next->ru       = info.ru;
        next->rlp      = info.rlp;
        next->rup      = info.rup;
      }
    }

#ifdef IS_MPI
    
    void duplicate( directionalStruct &info ){
      strcpy(info.name, name);
      info.isDipole = isDipole;
      info.isSticky = isSticky;
      info.dipole   = dipole;
      info.w0       = w0;
      info.v0       = v0;
      info.v0p      = v0p;
      info.rl       = rl;
      info.ru       = ru;
      info.rlp      = rlp;
      info.rup      = rup;
      info.last     = 0;
    }

#endif

    char name[15];
    int isDipole;
    int isSticky;
    double dipole;
    double w0;
    double v0;
    double v0p;
    double rl;
    double ru;
    double rlp;
    double rup;
    LinkedDirectionalType* next;
  };

  LinkedAtomType* headAtomType; 
  LinkedAtomType* currentAtomType;
  LinkedDirectionalType* headDirectionalType; 
  LinkedDirectionalType* currentDirectionalType;
}

using namespace WATER_NS;

//****************************************************************
// begins the actual forcefield stuff.  
//****************************************************************


WATER::WATER(){

  char fileName[200];
  char* ffPath_env = "FORCE_PARAM_PATH";
  char* ffPath;
  char temp[200];

  headAtomType = NULL;
  currentAtomType = NULL;
  headDirectionalType = NULL;
  currentDirectionalType = NULL;

  // do the funtion wrapping
  wrapMeFF( this );

#ifdef IS_MPI
  int i;
  
   // **********************************************************************
  // Init the atomStruct mpi type

  atomStruct atomProto; // mpiPrototype
  int atomBC[3] = {15,4,5};  // block counts
  MPI_Aint atomDspls[3];           // displacements
  MPI_Datatype atomMbrTypes[3];    // member mpi types

  MPI_Address(&atomProto.name, &atomDspls[0]);
  MPI_Address(&atomProto.mass, &atomDspls[1]);
  MPI_Address(&atomProto.ident, &atomDspls[2]);
  
  atomMbrTypes[0] = MPI_CHAR;
  atomMbrTypes[1] = MPI_DOUBLE;
  atomMbrTypes[2] = MPI_INT;
  
  for (i=2; i >= 0; i--) atomDspls[i] -= atomDspls[0];
  
  MPI_Type_struct(3, atomBC, atomDspls, atomMbrTypes, &mpiAtomStructType);
  MPI_Type_commit(&mpiAtomStructType);

  // ***********************************************************************

   // **********************************************************************
  // Init the directionalStruct mpi type

  directionalStruct directionalProto; // mpiPrototype
  int directionalBC[3] = {15,8,3};  // block counts
  MPI_Aint directionalDspls[3];           // displacements
  MPI_Datatype directionalMbrTypes[3];    // member mpi types

  MPI_Address(&directionalProto.name, &directionalDspls[0]);
  MPI_Address(&directionalProto.mass, &directionalDspls[1]);
  MPI_Address(&directionalProto.ident, &directionalDspls[2]);
  
  directionalMbrTypes[0] = MPI_CHAR;
  directionalMbrTypes[1] = MPI_DOUBLE;
  directionalMbrTypes[2] = MPI_INT;
  
  for (i=2; i >= 0; i--) directionalDspls[i] -= directionalDspls[0];
  
  MPI_Type_struct(3, directionalBC, directionalDspls, directionalMbrTypes,
                  &mpiDirectionalStructType);
  MPI_Type_commit(&mpiDirectionalStructType);

  // ***********************************************************************
  
  if( worldRank == 0 ){
#endif
    
    // generate the force file name
    
    strcpy( fileName, "WATER.frc" ); 
    //    fprintf( stderr,"Trying to open %s\n", fileName );
    
    // attempt to open the file in the current directory first.
    
    frcFile = fopen( fileName, "r" );
    
    if( frcFile == NULL ){
      
      // next see if the force path enviorment variable is set
      
      ffPath = getenv( ffPath_env );
      if( ffPath == NULL ) {
        STR_DEFINE(ffPath, FRC_PATH );
      }
      
      
      strcpy( temp, ffPath );
      strcat( temp, "/" );
      strcat( temp, fileName );
      strcpy( fileName, temp );
      
      frcFile = fopen( fileName, "r" );
      
      if( frcFile == NULL ){
        
        sprintf( painCave.errMsg,
                 "Error opening the force field parameter file: %s\n"
                 "Have you tried setting the FORCE_PARAM_PATH environment "
                 "variable?\n",
                 fileName );
        painCave.isFatal = 1;
        simError();
      }
    }
    
#ifdef IS_MPI
  }
  
  sprintf( checkPointMsg, "WATER file opened sucessfully." );
  MPIcheckPoint();
  
#endif // is_mpi
}


WATER::~WATER(){

  if( headAtomType != NULL ) delete headAtomType;
  if( headDirectionalType != NULL ) delete headDirectionalType;

#ifdef IS_MPI
  if( worldRank == 0 ){
#endif // is_mpi
    
    fclose( frcFile );
    
#ifdef IS_MPI
  }
#endif // is_mpi
}

void WATER::cleanMe( void ){

#ifdef IS_MPI
  
  // keep the linked list in the mpi version

#else // is_mpi

  // delete the linked list in the single processor version

  if( headAtomType != NULL ) delete headAtomType;
  if( headDirectionalType != NULL ) delete headDirectionalType;

#endif // is_mpi
}


void WATER::initForceField( int ljMixRule ){
  
  initFortran( ljMixRule, entry_plug->useReactionField );
}


void WATER::readParams( void ){

  int identNum;

  atomStruct atomInfo;
  directionalStruct directionalInfo;

  atomInfo.last = 1;         // initialize last to have the last set. 
  directionalInfo.last = 1;  // if things go well, last will be set to 0
  
  atomPos = new fpos_t;
  bigSigma = 0.0;

#ifdef IS_MPI
  if( worldRank == 0 ){
#endif
    
    // read in the atom types.

    headAtomType = new LinkedAtomType;
    
    fastForward( "AtomTypes", "initializeAtoms" );

    // we are now at the AtomTypes section.
    
    eof_test = fgets( readLine, sizeof(readLine), frcFile );
    lineNum++;
    
    
    // read a line, and start parsing out the atom types 

    if( eof_test == NULL ){
      sprintf( painCave.errMsg, 
               "Error in reading Atoms from force file at line %d.\n",
               lineNum );
      painCave.isFatal = 1;
      simError();
    }
    
    identNum = 1;
    // stop reading at end of file, or at next section
    while( readLine[0] != '#' && eof_test != NULL ){

      // toss comment lines
      if( readLine[0] != '!' ){
        
        // the parser returns 0 if the line was blank
        if( parseAtom( readLine, lineNum, atomInfo ) ){
          atomInfo.ident = identNum;
          headAtomType->add( atomInfo );
          if ( atomInfo.isDirectional ) {

            // if the atom is directional, skip to the directional section
            // and parse directional info.
            fgetpos( frcFile, atomPos );
            sectionSearch( "DirectionalTypes", atomInfo.name, 
                           "initializeDirectional" );
            parseDirectional( readLine, lineNum, directionalInfo );

            // return to the AtomTypes section
            fsetpos( frcFile, atomPos ); 
          }
          identNum++;
        }
      }
      eof_test = fgets( readLine, sizeof(readLine), frcFile );
      lineNum++;
    }

#ifdef IS_MPI
    
    // send out the linked list to all the other processes
    
    sprintf( checkPointMsg,
             "WATER atom structures read successfully." );
    MPIcheckPoint();
    
    currentAtomType = headAtomType->next; //skip the first element who is a place holder.
    while( currentAtomType != NULL ){
      currentAtomType->duplicate( atomInfo );
      
      sendFrcStruct( &atomInfo, mpiAtomStructType );
      
      sprintf( checkPointMsg,
               "successfully sent WATER force type: \"%s\"\n",
               atomInfo.name );
      MPIcheckPoint();
      
      currentAtomType = currentAtomType->next;
    }
    atomInfo.last = 1;
    sendFrcStruct( &atomInfo, mpiAtomStructType );

    if ( atomInfo.isDirectional ){
      // send out the linked list to all the other processes
      
      sprintf( checkPointMsg,
               "WATER directional structures read successfully." );
      MPIcheckPoint();
      
      currentDirectionalType = headDirectionalType->next;
      while( currentDirectionalType != NULL ){
        currentDirectionalType->duplicate( directionalInfo );
        sendFrcStruct( &directionalInfo, mpiDirectionalStructType );
        currentDirectionalType = currentDirectionalType->next;
      }
      directionalInfo.last = 1;
      sendFrcStruct( &directionalInfo, mpiDirectionalStructType ); 
    } 
  }
  
  else{
    
    // listen for node 0 to send out the force params
    
    MPIcheckPoint();
    
    headAtomType = new LinkedAtomType;
    receiveFrcStruct( &atomInfo, mpiAtomStructType );
    
    while( !atomInfo.last ){
      
      headAtomType->add( atomInfo );
      
      MPIcheckPoint();
      
      receiveFrcStruct( &atomInfo, mpiAtomStructType );
    }

    if ( atomInfo.isDirectional ) {
      // listen for node 0 to send out the force params
      
      MPIcheckPoint(); 
      
      headDirectionalType = new LinkedDirectionalType;
      receiveFrcStruct( &directionalInfo, mpiDirectionalStructType );
      while( !directionalInfo.last ){
        
        headDirectionalType->add( directionalInfo );
        receiveFrcStruct( &directionalInfo, mpiDirectionalStructType );
      }
      
      sprintf( checkPointMsg,
               "WATER directional structures broadcast successfully." );
      MPIcheckPoint();
    }
  }

#endif // is_mpi


  // call new A_types in fortran
  
  int isError;

  // dummy variables
  int isGB = 0;
  int isEAM = 0;
  
  currentAtomType = headAtomType;
  while( currentAtomType != NULL ){
 
    if( currentAtomType->isLJ ) entry_plug->useLJ = 1;
    if( currentAtomType->isCharge ) entry_plug->useCharge = 1;
    if( currentAtomType->isDirectional ){
      if ( currentAtomType->isDipole ){
        entry_plug->useDipoles = 1;
        &(currentAtomType->dipole);
      }
      if ( currentAtomType->isSticky ) {
        entry_plug->useSticky = 1;
        set_sticky_params( &(currentAtomType->w0), &(currentAtomType->v0), 
                           &(currentAtomType->v0p), 
                           &(currentAtomType->rl), &(currentAtomType->ru), 
                           &(currentAtomType->rlp), &(currentAtomType->rup));
      }
    }
    if( currentAtomType->name[0] != '\0' ){
      isError = 0;
      makeAtype( &(currentAtomType->ident),
                 &isGB,
                 &isEAM,
                 &(currentAtomType->isDirectional),
                 &(currentAtomType->isLJ),
                 &(currentAtomType->isCharge),
                 &(currentAtomType->epslon),
                 &(currentAtomType->sigma),
                 &(currentAtomType->charge),
                 &isError );
      if( isError ){
        sprintf( painCave.errMsg,
                 "Error initializing the \"%s\" atom type in fortran\n",
                 currentAtomType->name );
        painCave.isFatal = 1;
        simError();
      }
    }
    currentAtomType = currentAtomType->next;
  }

#ifdef IS_MPI
  sprintf( checkPointMsg,
           "WATER atom structures successfully sent to fortran\n" );
  MPIcheckPoint();
#endif // is_mpi


  // now read in the directional stuff

#ifdef IS_MPI
  if( worldRank == 0 ) {
#endif

    // read in the directional types

    headDirectionalType = new LinkedDirectionalType;
    
    fastForward( "DirectionalTypes", "initializeDirectionals" );
  
    // we are now at the directionalTypes section
    
    eof_test =  fgets( readLine, sizeof(readLine), frcFile );
    lineNum++;
    
    
    // read a line, and start parsing out the atom types 

    if( eof_test == NULL ){
      sprintf( painCave.errMsg, 
               "Error in reading directionals from force file at line %d.\n",
               lineNum );
      painCave.isFatal = 1;
      simError();
    }
    
    // stop reading at end of file, or at next section
    while( readLine[0] != '#' && eof_test != NULL ){

      // toss comment lines
      if( readLine[0] != '!' ){
        
        // the parser returns 0 if the line was blank
        if( parseDirectional( readLine, lineNum, directionalInfo ) ){
          headDirectionalType->add( directionalInfo );
        }
      }
      eof_test = fgets( readLine, sizeof(readLine), frcFile );
      lineNum++;
    }
        
#ifdef IS_MPI
    
    // send out the linked list to all the other processes
    
    sprintf( checkPointMsg,
             "DUFF directional structures read successfully." );
    MPIcheckPoint();
    
    currentDirectionalType = headDirectionalType->next;
    while( currentDirectionalType != NULL ){
      currentDirectionalType->duplicate( directionalInfo );
      sendFrcStruct( &directionalInfo, mpiDirectionalStructType );
      currentDirectionalType = currentDirectionalType->next;
    }
    directionalInfo.last = 1;
    sendFrcStruct( &directionalInfo, mpiDirectionalStructType );
    
  }

  else{
    
    // listen for node 0 to send out the force params
    
    MPIcheckPoint(); 

    headDirectionalType = new LinkedDirectionalType;
    receiveFrcStruct( &directionalInfo, mpiDirectionalStructType );
    while( !directionalInfo.last ){

      headDirectionalType->add( directionalInfo );
      receiveFrcStruct( &directionalInfo, mpiDirectionalStructType );
    }
  }

  sprintf( checkPointMsg,
           "WATER directional structures broadcast successfully." );
  MPIcheckPoint();

#endif // is_mpi
}


void WATER::initializeAtoms( int nAtoms, Atom** the_atoms ){
  
  int i;

  // initialize the atoms
  

  for( i=0; i<nAtoms; i++ ){
    
    currentAtomType = headAtomType->find( the_atoms[i]->getType() );
    if( currentAtomType == NULL ){
      sprintf( painCave.errMsg, 
               "AtomType error, %s not found in force file.\n",
               the_atoms[i]->getType() );
      painCave.isFatal = 1;
      simError();
    }

    the_atoms[i]->setisLJ( currentAtomType->isLJ);
    the_atoms[i]->setisCharge( currentAtomType->isCharge);
    the_atoms[i]->setMass( currentAtomType->mass );
    the_atoms[i]->setEpslon( currentAtomType->epslon );
    the_atoms[i]->setSigma( currentAtomType->sigma );
    the_atoms[i]->setCharge( currentAtomType->charge );
    the_atoms[i]->setIdent( currentAtomType->ident );

  }
}

void WATER::initializeDirectional( int nAtoms, Atom** the_atoms ){
  
  int i;

  // initialize the atoms
  

  for( i=0; i<nAtoms; i++ ){
    
    currentAtomType = headAtomType->find( the_atoms[i]->getType() );
    if( currentAtomType == NULL ){
      sprintf( painCave.errMsg, 
               "AtomType error, %s not found in force file.\n",
               the_atoms[i]->getType() );
      painCave.isFatal = 1;
      simError();
    }

    the_atoms[i]->setisLJ( currentAtomType->isLJ);
    the_atoms[i]->setisCharge( currentAtomType->isCharge);
    the_atoms[i]->setMass( currentAtomType->mass );
    the_atoms[i]->setEpslon( currentAtomType->epslon );
    the_atoms[i]->setSigma( currentAtomType->sigma );
    the_atoms[i]->setCharge( currentAtomType->charge );
    the_atoms[i]->setIdent( currentAtomType->ident );

  }
}

void WATER::initializeBonds( int nBonds, Bond** BondArray,
                             bond_pair* the_bonds ){
  
    if( nBonds ){
      sprintf( painCave.errMsg,
               "WATER does not support bonds.\n" );
      painCave.isFatal = 1;
      simError();
    }
}

void WATER::initializeBends( int nBends, Bend** bendArray,
                             bend_set* the_bends ){

    if( nBends ){
      sprintf( painCave.errMsg,
               "WATER does not support bends.\n" );
      painCave.isFatal = 1;
      simError();
    }
}

void WATER::initializeTorsions( int nTorsions, Torsion** torsionArray,
                                torsion_set* the_torsions ){

    if( nTorsions ){
      sprintf( painCave.errMsg,
               "WATER does not support torsions.\n" );
      painCave.isFatal = 1;
      simError();
    }
}

void WATER::fastForward( char* stopText, char* searchOwner ){

  int foundText = 0;
  char* the_token;

  rewind( frcFile );
  lineNum = 0;

  eof_test = fgets( readLine, sizeof(readLine), frcFile );
  lineNum++;
  if( eof_test == NULL ){
    sprintf( painCave.errMsg, "Error fast forwarding force file for %s: "
             " file is empty.\n",
             searchOwner );
    painCave.isFatal = 1;
    simError();
  }
  
  
  while( !foundText ){
    while( eof_test != NULL && readLine[0] != '#' ){
      eof_test = fgets( readLine, sizeof(readLine), frcFile );
      lineNum++;
    }
    if( eof_test == NULL ){
      sprintf( painCave.errMsg,
               "Error fast forwarding force file for %s at "
               "line %d: file ended unexpectedly.\n",
               searchOwner,
               lineNum );
      painCave.isFatal = 1;
      simError();
    }
    
    the_token = strtok( readLine, " ,;\t#\n" );
    foundText = !strcmp( stopText, the_token );
    
    if( !foundText ){
      eof_test = fgets( readLine, sizeof(readLine), frcFile );
      lineNum++;
      
      if( eof_test == NULL ){
        sprintf( painCave.errMsg, 
                 "Error fast forwarding force file for %s at "
                 "line %d: file ended unexpectedly.\n",
                 searchOwner,
                 lineNum );
        painCave.isFatal = 1;
        simError();
      } 
    }
  }  
}

void WATER::sectionSearch( char* secHead, char* stopText, char* searchOwner ){

  int foundSection = 0;
  int foundText = 0;
  char* the_token;
  tempPos = new fpos_t;

  rewind( frcFile );
  lineNum = 0;

  eof_test = fgets( readLine, sizeof(readLine), frcFile );
  lineNum++;
  if( eof_test == NULL ){
    sprintf( painCave.errMsg, "Error fast forwarding force file for %s: "
             " file is empty.\n",
             searchOwner );
    painCave.isFatal = 1;
    simError();
  }
  
  
  while( !foundSection ){
    while( eof_test != NULL && readLine[0] != '#' ){
      eof_test = fgets( readLine, sizeof(readLine), frcFile );
      lineNum++;
    }
    if( eof_test == NULL ){
      sprintf( painCave.errMsg,
               "Error fast forwarding force file for %s at "
               "line %d: file ended unexpectedly.\n",
               searchOwner,
               lineNum );
      painCave.isFatal = 1;
      simError();
    }
    
    the_token = strtok( readLine, " ,;\t#\n" );
    foundSection = !strcmp( secHead, the_token );
    
    
    if( !foundSection ){
      eof_test = fgets( readLine, sizeof(readLine), frcFile );
      lineNum++;
      
      if( eof_test == NULL ){
        sprintf( painCave.errMsg, 
                 "Error section searching force file for %s at "
                 "line %d: file ended unexpectedly.\n",
                 searchOwner,
                 lineNum );
        painCave.isFatal = 1;
        simError();
      } 
    }
  }  

  while( !foundText ){
    if( !foundText ){
      fgetpos( frcFile, tempPos );
      eof_test = fgets( readLine, sizeof(readLine), frcFile );
      lineNum++;
      
      if( eof_test == NULL ){
        sprintf( painCave.errMsg, 
                 "Error fast forwarding force file for %s at "
                 "line %d: file ended unexpectedly.\n",
                 searchOwner,
                 lineNum );
        painCave.isFatal = 1;
        simError();
      } 
    }
    
    the_token = strtok( readLine, " ,;\t#\n" );
    foundText = !strcmp( stopText, the_token );
  }  
  
  fsetPos( frcFile, tempPos );
}


int WATER_NS::parseAtom( char *lineBuffer, int lineNum, atomStruct &info ){

  char* the_token;
  
  the_token = strtok( lineBuffer, " \n\t,;" );
  if( the_token != NULL ){
    
    strcpy( info.name, the_token );
          
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing AtomTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }
    
    info.isDirectional = atoi( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing AtomTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.isLJ = atoi( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing AtomTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.isCharge = atoi( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing AtomTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.mass = atof( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing AtomTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }
        
    info.epslon = atof( the_token );
          
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing AtomTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }
        
    info.sigma = atof( the_token );

    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing AtomTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.charge = atof( the_token );

    return 1;
  }
  else return 0;
}

int WATER_NS::parseDirectional( char *lineBuffer, int lineNum, directionalStruct &info ){

  char* the_token;
  
  the_token = strtok( lineBuffer, " \n\t,;" );
  if( the_token != NULL ){
    
    strcpy( info.name, the_token );
          
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }
    
    info.isDipole = atoi( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.isSticky = atoi( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.I_xx = atof( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.I_yy = atof( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.I_zz = atof( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }


    info.dipole = atof( the_token );
    
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }
        
    info.w0 = atof( the_token );
          
    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }
        
    info.v0 = atof( the_token );

    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.v0p = atof( the_token );

    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.rl = atof( the_token );

    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.ru = atof( the_token );

    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.rlp = atof( the_token );

    if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){
      sprintf( painCave.errMsg, 
               "Error parseing DirectionalTypes: line %d\n", lineNum );
      painCave.isFatal = 1;
      simError();
    }

    info.rup = atof( the_token );

    return 1;
  }
  else return 0;
}
Revision:	976
Committed:	Thu Jan 22 17:34:20 2004 UTC (21 years, 9 months ago) by chrisfen
File size:	27504 byte(s)
Log Message:	Corrected spelling in several directories, and stated WATER.cpp