fixed some bugs, Changed entry_plug to info where appropriate
working on the system builder
fixing some compile time bugs
finished updating SimSetup to initialize and use the new MPI division of labour, and Molecule class
I'm overhauling the molecule class to contain it's own bonds, bends, and torsions. may god have mercy on my soul.
This commit was generated by cvs2svn to compensate for changes in r377, which included commits to RCS files with non-trunk default branches.
New OOPSE Tree
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