| 19 |
|
|
| 20 |
|
void setSimInfo( SimInfo* the_info ) { info = the_info; } |
| 21 |
|
void setSimInfo( SimInfo* the_info, int theNinfo ); |
| 22 |
+ |
void suspendInit( void ) { initSuspend = true; } |
| 23 |
|
void parseFile( char* fileName ); |
| 24 |
|
void createSim( void ); |
| 25 |
|
|
| 66 |
|
SimInfo* info; |
| 67 |
|
int isInfoArray; |
| 68 |
|
int nInfo; |
| 69 |
+ |
|
| 70 |
+ |
bool initSuspend; |
| 71 |
|
|
| 72 |
|
int n_components; |
| 73 |
|
int globalAtomIndex; |
| 85 |
|
int tot_torsions; |
| 86 |
|
int tot_SRI; |
| 87 |
|
|
| 85 |
– |
Atom** the_atoms; |
| 86 |
– |
SRI** the_sris; |
| 87 |
– |
Exclude** the_excludes; |
| 88 |
– |
Molecule* the_molecules; |
| 88 |
|
ForceFields* the_ff; |
| 89 |
|
|
| 90 |
|
// needed by makeElement |
| 98 |
|
int* globalIndex; |
| 99 |
|
#endif //is_mpi |
| 100 |
|
|
| 101 |
+ |
void setupZConstraint(SimInfo& theInfo); //setup parameters for zconstraint method |
| 102 |
+ |
|
| 103 |
|
}; |
| 104 |
|
#endif |