| 16 |
|
SimSetup(); |
| 17 |
|
~SimSetup(); |
| 18 |
|
|
| 19 |
< |
void setSimInfo( SimInfo* the_simnfo ) { simnfo = the_simnfo; } |
| 19 |
> |
void setSimInfo( SimInfo* the_info ) { info = the_info; } |
| 20 |
|
void parseFile( char* fileName ); |
| 21 |
|
void createSim( void ); |
| 22 |
|
|
| 32 |
|
void finalInfoCheck( void ); |
| 33 |
|
void initSystemCoords( void ); |
| 34 |
|
void makeOutNames(void); |
| 35 |
+ |
void makeIntegrator(void); |
| 36 |
+ |
void initFortran(void); |
| 37 |
|
|
| 38 |
|
void createFF( void ); |
| 39 |
|
void compList( void ); |
| 63 |
|
SimInfo* info; |
| 64 |
|
|
| 65 |
|
int n_components; |
| 66 |
+ |
int globalAtomIndex; |
| 67 |
|
|
| 68 |
|
char force_field[100]; |
| 69 |
|
char ensemble[100]; |