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#include "AbstractClasses.hpp" |
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#include "MakeStamps.hpp" |
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#include "SimState.hpp" |
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#include "Restraints.hpp" |
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#define __C |
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#include "fSimulation.h" |
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#include "GenericData.hpp" |
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//#include "Minimizer.hpp" |
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//#include "OOPSEMinimizer.hpp" |
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|
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|
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double roundMe( double x ); |
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class OOPSEMinimizer; |
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class SimInfo{ |
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int useReactionField; |
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int useGB; |
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int useEAM; |
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int useMolecularCutoffs; |
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bool haveCutoffGroups; |
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bool useInitXSstate; |
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double orthoTolerance; |
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BaseIntegrator *the_integrator; // the integrator of the simulation |
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OOPSEMinimizer* the_minimizer; // the energy minimizer |
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Restraints* restraint; |
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bool has_minimizer; |
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char finalName[300]; // the name of the eor file to be written |
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char sampleName[300]; // the name of the dump file to be written |
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char statusName[300]; // the name of the stat file to be written |
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char rawPotName[300]; // the name of the raw file to be written |
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int seed; //seed for random number generator |
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int useSolidThermInt; // is solid-state thermodynamic integration being used |
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int useLiquidThermInt; // is liquid thermodynamic integration being used |
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double thermIntLambda; // lambda for TI |
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double thermIntK; // power of lambda for TI |
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double vRaw; // unperturbed potential for TI |
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double vHarm; // harmonic potential for TI |
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int i; // just an int |
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vector<double> mfact; |
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vector<int> FglobalGroupMembership; |
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int ngroup; |
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vector<int> groupList; |
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vector<int> groupStart; |
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> |
int* globalGroupMembership; |
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// refreshes the sim if things get changed (load balanceing, volume |
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// adjustment, etc.) |
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//Addtional Properties of SimInfo |
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map<string, GenericData*> properties; |
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void getFortranGroupArrays(SimInfo* info, |
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vector<int>& FglobalGroupMembership, |
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vector<double>& mfact); |
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}; |
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void getFortranGroupArray(SimInfo* info, vector<double>& mfact, int& ngroup, |
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vector<int>& groupList, vector<int>& groupStart); |
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#endif |
