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#include "AbstractClasses.hpp" |
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#include "MakeStamps.hpp" |
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#include "SimState.hpp" |
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#include "Restraints.hpp" |
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#define __C |
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#include "fSimulation.h" |
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#include "GenericData.hpp" |
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//#include "Minimizer.hpp" |
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//#include "OOPSEMinimizer.hpp" |
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double roundMe( double x ); |
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class OOPSEMinimizer; |
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class SimInfo{ |
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int useReactionField; |
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int useGB; |
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int useEAM; |
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int useMolecularCutoffs; |
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bool haveCutoffGroups; |
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bool useInitXSstate; |
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double orthoTolerance; |
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BaseIntegrator *the_integrator; // the integrator of the simulation |
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OOPSEMinimizer* the_minimizer; // the energy minimizer |
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Restraints* restraint; |
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bool has_minimizer; |
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char finalName[300]; // the name of the eor file to be written |
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char sampleName[300]; // the name of the dump file to be written |
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char statusName[300]; // the name of the stat file to be written |
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char rawPotName[300]; // the name of the raw file to be written |
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int seed; //seed for random number generator |
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int useSolidThermInt; // is solid-state thermodynamic integration being used |
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int useLiquidThermInt; // is liquid thermodynamic integration being used |
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double thermIntLambda; // lambda for TI |
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double thermIntK; // power of lambda for TI |
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double vRaw; // unperturbed potential for TI |
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double vHarm; // harmonic potential for TI |
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int i; // just an int |
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vector<double> mfact; |
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int ngroup; |
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void scaleBox( double scale ); |
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void setDefaultRcut( double theRcut ); |
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void setDefaultEcr( double theEcr ); |
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void setDefaultEcr( double theEcr, double theEst ); |
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void setDefaultRcut( double theRcut, double theRsw ); |
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void checkCutOffs( void ); |
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double getRcut( void ) { return rCut; } |
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double getRlist( void ) { return rList; } |
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double getEcr( void ) { return ecr; } |
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double getEst( void ) { return est; } |
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double getRsw( void ) { return rSw; } |
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double getMaxCutoff( void ) { return maxCutoff; } |
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void setTime( double theTime ) { currentTime = theTime; } |
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void incrTime( double the_dt ) { currentTime += the_dt; } |
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void decrTime( double the_dt ) { currentTime -= the_dt; } |
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SimState* myConfiguration; |
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int boxIsInit, haveRcut, haveEcr; |
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int boxIsInit, haveRcut, haveRsw; |
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double rList, rCut; // variables for the neighborlist |
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double ecr; // the electrostatic cutoff radius |
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double est; // the electrostatic skin thickness |
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double rSw; // the switching radius |
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double maxCutoff; |
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double distXY; |
