| 86 |
|
int useGB; |
| 87 |
|
int useEAM; |
| 88 |
|
|
| 89 |
+ |
bool useInitXSstate; |
| 90 |
+ |
double orthoTolerance; |
| 91 |
|
|
| 92 |
|
double dt, run_time; // the time step and total time |
| 93 |
|
double sampleTime, statusTime; // the position and energy dump frequencies |
| 140 |
|
void scaleBox( double scale ); |
| 141 |
|
|
| 142 |
|
void setRcut( double theRcut ); |
| 143 |
+ |
void setDefaultRcut( double theRcut ); |
| 144 |
|
void setEcr( double theEcr ); |
| 145 |
+ |
void setDefaultEcr( double theEcr ); |
| 146 |
|
void setEcr( double theEcr, double theEst ); |
| 147 |
+ |
void setDefaultEcr( double theEcr, double theEst ); |
| 148 |
+ |
void checkCutOffs( void ); |
| 149 |
|
|
| 150 |
|
double getRcut( void ) { return rCut; } |
| 151 |
|
double getRlist( void ) { return rList; } |
| 200 |
|
double distXY; |
| 201 |
|
double distYZ; |
| 202 |
|
double distZX; |
| 203 |
+ |
|
| 204 |
+ |
|
| 205 |
|
|
| 206 |
|
void calcHmatInv( void ); |
| 207 |
|
void calcBoxL(); |
| 208 |
|
double calcMaxCutOff(); |
| 201 |
– |
void checkCutOffs( void ); |
| 209 |
|
|
| 210 |
+ |
|
| 211 |
|
// private function to initialize the fortran side of the simulation |
| 212 |
|
setFortranSim_TD setFsimulation; |
| 213 |
|
|