86 |
|
int useGB; |
87 |
|
int useEAM; |
88 |
|
|
89 |
+ |
bool useInitXSstate; |
90 |
+ |
double orthoTolerance; |
91 |
|
|
92 |
|
double dt, run_time; // the time step and total time |
93 |
|
double sampleTime, statusTime; // the position and energy dump frequencies |
139 |
|
void getBoxM( double theBox[3][3] ); |
140 |
|
void scaleBox( double scale ); |
141 |
|
|
140 |
– |
void setRcut( double theRcut ); |
142 |
|
void setDefaultRcut( double theRcut ); |
142 |
– |
void setEcr( double theEcr ); |
143 |
|
void setDefaultEcr( double theEcr ); |
144 |
– |
void setEcr( double theEcr, double theEst ); |
144 |
|
void setDefaultEcr( double theEcr, double theEst ); |
145 |
|
void checkCutOffs( void ); |
146 |
|
|
183 |
|
|
184 |
|
SimState* myConfiguration; |
185 |
|
|
186 |
< |
double origRcut, origEcr; |
188 |
< |
int boxIsInit, haveOrigRcut, haveOrigEcr; |
186 |
> |
int boxIsInit, haveRcut, haveEcr; |
187 |
|
|
190 |
– |
double oldEcr; |
191 |
– |
double oldRcut; |
192 |
– |
|
188 |
|
double rList, rCut; // variables for the neighborlist |
189 |
|
double ecr; // the electrostatic cutoff radius |
190 |
|
double est; // the electrostatic skin thickness |
193 |
|
double distXY; |
194 |
|
double distYZ; |
195 |
|
double distZX; |
196 |
+ |
|
197 |
+ |
|
198 |
|
|
199 |
|
void calcHmatInv( void ); |
200 |
|
void calcBoxL(); |