| 20 |
|
return ( x >= 0 ) ? floor( x + 0.5 ) : ceil( x - 0.5 ); |
| 21 |
|
} |
| 22 |
|
|
| 23 |
+ |
inline double min( double a, double b ){ |
| 24 |
+ |
return (a < b ) ? a : b; |
| 25 |
+ |
} |
| 26 |
|
|
| 27 |
|
SimInfo* currentInfo; |
| 28 |
|
|
| 55 |
|
usePBC = 0; |
| 56 |
|
useLJ = 0; |
| 57 |
|
useSticky = 0; |
| 58 |
< |
useDipole = 0; |
| 58 |
> |
useCharges = 0; |
| 59 |
> |
useDipoles = 0; |
| 60 |
|
useReactionField = 0; |
| 61 |
|
useGB = 0; |
| 62 |
|
useEAM = 0; |
| 481 |
|
|
| 482 |
|
fInfo.dielect = 0.0; |
| 483 |
|
|
| 484 |
< |
if( useDipole ){ |
| 484 |
> |
if( useDipoles ){ |
| 485 |
|
if( useReactionField )fInfo.dielect = dielectric; |
| 486 |
|
} |
| 487 |
|
|
| 490 |
|
fInfo.SIM_uses_LJ = useLJ; |
| 491 |
|
fInfo.SIM_uses_sticky = useSticky; |
| 492 |
|
//fInfo.SIM_uses_sticky = 0; |
| 493 |
< |
fInfo.SIM_uses_dipoles = useDipole; |
| 493 |
> |
fInfo.SIM_uses_charges = useCharges; |
| 494 |
> |
fInfo.SIM_uses_dipoles = useDipoles; |
| 495 |
|
//fInfo.SIM_uses_dipoles = 0; |
| 496 |
|
//fInfo.SIM_uses_RF = useReactionField; |
| 497 |
|
fInfo.SIM_uses_RF = 0; |
| 544 |
|
void SimInfo::setDefaultEcr( double theEcr ){ |
| 545 |
|
|
| 546 |
|
haveEcr = 1; |
| 547 |
+ |
ecr = theEcr; |
| 548 |
|
|
| 549 |
|
( rCut > ecr )? rList = rCut + 1.0: rList = ecr + 1.0; |
| 550 |
|
|
| 545 |
– |
ecr = theEcr; |
| 546 |
– |
|
| 551 |
|
notifyFortranCutOffs( &rCut, &rList, &ecr, &est ); |
| 552 |
|
} |
| 553 |
|
|
| 567 |
|
if( rCut > maxCutoff ){ |
| 568 |
|
sprintf( painCave.errMsg, |
| 569 |
|
"Box size is too small for the long range cutoff radius, " |
| 570 |
< |
"%lf, at time %lf\n", |
| 571 |
< |
rCut, currentTime ); |
| 570 |
> |
"%G, at time %G\n" |
| 571 |
> |
" [ %G %G %G ]\n" |
| 572 |
> |
" [ %G %G %G ]\n" |
| 573 |
> |
" [ %G %G %G ]\n", |
| 574 |
> |
rCut, currentTime, |
| 575 |
> |
Hmat[0][0], Hmat[0][1], Hmat[0][2], |
| 576 |
> |
Hmat[1][0], Hmat[1][1], Hmat[1][2], |
| 577 |
> |
Hmat[2][0], Hmat[2][1], Hmat[2][2]); |
| 578 |
|
painCave.isFatal = 1; |
| 579 |
|
simError(); |
| 580 |
|
} |
| 583 |
|
if( ecr > maxCutoff ){ |
| 584 |
|
sprintf( painCave.errMsg, |
| 585 |
|
"Box size is too small for the electrostatic cutoff radius, " |
| 586 |
< |
"%lf, at time %lf\n", |
| 587 |
< |
ecr, currentTime ); |
| 586 |
> |
"%G, at time %G\n" |
| 587 |
> |
" [ %G %G %G ]\n" |
| 588 |
> |
" [ %G %G %G ]\n" |
| 589 |
> |
" [ %G %G %G ]\n", |
| 590 |
> |
ecr, currentTime, |
| 591 |
> |
Hmat[0][0], Hmat[0][1], Hmat[0][2], |
| 592 |
> |
Hmat[1][0], Hmat[1][1], Hmat[1][2], |
| 593 |
> |
Hmat[2][0], Hmat[2][1], Hmat[2][2]); |
| 594 |
|
painCave.isFatal = 1; |
| 595 |
|
simError(); |
| 596 |
|
} |