| 23 |
|
|
| 24 |
|
const char *jolt = " \t\n;,"; |
| 25 |
|
|
| 26 |
< |
strcpy(springName, "HarmSpringConsts.txt"); |
| 26 |
> |
#ifdef IS_MPI |
| 27 |
> |
if(worldRank == 0 ){ |
| 28 |
> |
#endif // is_mpi |
| 29 |
|
|
| 30 |
< |
ifstream springs(springName); |
| 31 |
< |
|
| 32 |
< |
if (!springs) { |
| 33 |
< |
sprintf(painCave.errMsg, |
| 34 |
< |
"Restraints Warning: Unable to open HarmSpringConsts.txt for reading.\n" |
| 35 |
< |
"\tDefault spring constants will be loaded. If you want to specify\n" |
| 36 |
< |
"\tspring constants, include a three line HarmSpringConsts.txt file\n" |
| 37 |
< |
"\tin the current directory.\n"); |
| 38 |
< |
painCave.isFatal = 0; |
| 39 |
< |
simError(); |
| 40 |
< |
|
| 41 |
< |
// load default spring constants |
| 42 |
< |
kDist = 6; // spring constant in units of kcal/(mol*ang^2) |
| 43 |
< |
kTheta = 7.5; // in units of kcal/mol |
| 44 |
< |
kOmega = 13.5; // in units of kcal/mol |
| 45 |
< |
return; |
| 30 |
> |
strcpy(springName, "HarmSpringConsts.txt"); |
| 31 |
> |
|
| 32 |
> |
ifstream springs(springName); |
| 33 |
> |
|
| 34 |
> |
if (!springs) { |
| 35 |
> |
sprintf(painCave.errMsg, |
| 36 |
> |
"In Restraints: Unable to open HarmSpringConsts.txt for reading.\n" |
| 37 |
> |
"\tDefault spring constants will be loaded. If you want to specify\n" |
| 38 |
> |
"\tspring constants, include a three line HarmSpringConsts.txt file\n" |
| 39 |
> |
"\tin the current directory.\n"); |
| 40 |
> |
painCave.severity = OOPSE_WARNING; |
| 41 |
> |
painCave.isFatal = 0; |
| 42 |
> |
simError(); |
| 43 |
> |
|
| 44 |
> |
// load default spring constants |
| 45 |
> |
kDist = 6; // spring constant in units of kcal/(mol*ang^2) |
| 46 |
> |
kTheta = 7.5; // in units of kcal/mol |
| 47 |
> |
kOmega = 13.5; // in units of kcal/mol |
| 48 |
> |
} else { |
| 49 |
> |
|
| 50 |
> |
springs.getline(inLine,999,'\n'); |
| 51 |
> |
springs.getline(inLine,999,'\n'); |
| 52 |
> |
token = strtok(inLine,jolt); |
| 53 |
> |
token = strtok(NULL,jolt); |
| 54 |
> |
strcpy(inValue,token); |
| 55 |
> |
kDist = (atof(inValue)); |
| 56 |
> |
springs.getline(inLine,999,'\n'); |
| 57 |
> |
token = strtok(inLine,jolt); |
| 58 |
> |
token = strtok(NULL,jolt); |
| 59 |
> |
strcpy(inValue,token); |
| 60 |
> |
kTheta = (atof(inValue)); |
| 61 |
> |
springs.getline(inLine,999,'\n'); |
| 62 |
> |
token = strtok(inLine,jolt); |
| 63 |
> |
token = strtok(NULL,jolt); |
| 64 |
> |
strcpy(inValue,token); |
| 65 |
> |
kOmega = (atof(inValue)); |
| 66 |
> |
springs.close(); |
| 67 |
> |
} |
| 68 |
> |
#ifdef IS_MPI |
| 69 |
|
} |
| 70 |
+ |
|
| 71 |
+ |
MPI_Bcast(&kDist, 1, MPI_DOUBLE, 0, MPI_COMM_WORLD); |
| 72 |
+ |
MPI_Bcast(&kTheta, 1, MPI_DOUBLE, 0, MPI_COMM_WORLD); |
| 73 |
+ |
MPI_Bcast(&kOmega, 1, MPI_DOUBLE, 0, MPI_COMM_WORLD); |
| 74 |
+ |
|
| 75 |
+ |
sprintf( checkPointMsg, |
| 76 |
+ |
"Sucessfully opened and read spring file.\n"); |
| 77 |
+ |
MPIcheckPoint(); |
| 78 |
|
|
| 79 |
< |
springs.getline(inLine,999,'\n'); |
| 80 |
< |
springs.getline(inLine,999,'\n'); |
| 81 |
< |
token = strtok(inLine,jolt); |
| 82 |
< |
token = strtok(NULL,jolt); |
| 83 |
< |
strcpy(inValue,token); |
| 84 |
< |
kDist = (atof(inValue)); |
| 85 |
< |
springs.getline(inLine,999,'\n'); |
| 86 |
< |
token = strtok(inLine,jolt); |
| 87 |
< |
token = strtok(NULL,jolt); |
| 88 |
< |
strcpy(inValue,token); |
| 56 |
< |
kTheta = (atof(inValue)); |
| 57 |
< |
springs.getline(inLine,999,'\n'); |
| 58 |
< |
token = strtok(inLine,jolt); |
| 59 |
< |
token = strtok(NULL,jolt); |
| 60 |
< |
strcpy(inValue,token); |
| 61 |
< |
kOmega = (atof(inValue)); |
| 62 |
< |
springs.close(); |
| 63 |
< |
|
| 64 |
< |
cout << "The Spring Constants are:\n\tkDist = " << kDist << "\n\tkTheta = " << kTheta << "\n\tkOmega = " << kOmega << "\n"; |
| 79 |
> |
#endif // is_mpi |
| 80 |
> |
|
| 81 |
> |
sprintf(painCave.errMsg, |
| 82 |
> |
"The spring constants for thermodynamic integration are:\n" |
| 83 |
> |
"\tkDist = %lf\n" |
| 84 |
> |
"\tkTheta = %lf\n" |
| 85 |
> |
"\tkOmega = %lf\n", kDist, kTheta, kOmega); |
| 86 |
> |
painCave.severity = OOPSE_INFO; |
| 87 |
> |
painCave.isFatal = 0; |
| 88 |
> |
simError(); |
| 89 |
|
} |
| 90 |
|
|
| 91 |
|
Restraints::~Restraints(){ |