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#ifndef __READWRITE_H__ |
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#define __READWRITE_H__ |
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#define _LARGEFILE_SOURCE64 |
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#define _FILE_OFFSET_BITS 64 |
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#include <iostream> |
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#include <fstream> |
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#include <string> |
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#include <string.h> |
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#include <stdio.h> |
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#include <stdlib.h> |
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#include <unistd.h> |
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#include <sys/types.h> |
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#include <sys/stat.h> |
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#include <cstring> |
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#include <cstdio> |
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#include <cstdlib> |
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#include "Atom.hpp" |
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#include "SimInfo.hpp" |
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#include "Thermo.hpp" |
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#include "StuntDouble.hpp" |
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using namespace std; |
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class DumpWriter{ |
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public: |
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~DumpWriter(); |
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void writeDump( double currentTime ); |
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void writeFinal( double finalTime ); |
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void writeFinal( double currentTime); |
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void writeFrame( vector<ofstream*>& outFile, double finalTime ); |
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#ifdef IS_MPI |
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void update(); |
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#endif |
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private: |
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#ifdef IS_MPI |
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void sortByGlobalIndex(); |
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#endif |
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SimInfo* entry_plug; |
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ofstream outFile; |
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char outName[500]; |
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ofstream dumpFile; |
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#ifdef IS_MPI |
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vector<pair<int, int> > indexArray; |
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#endif |
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}; |
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class StatWriter{ |
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~StatWriter(); |
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void writeStat( double currentTime ); |
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private: |
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SimInfo* entry_plug; |
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ofstream outFile; |
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char outName[500]; |
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~InitializeFromFile(); |
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void readInit( SimInfo* the_entry_plug ); |
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private: |
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char* parseDumpLine(char* line, int atomIndex); |
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char* parseBoxLine(char* line, double boxMat[9], double &time ); |
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char* parseDumpLine(char* line, StuntDouble* sd); |
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char* parseCommentLine(char* line, SimInfo* entry_plug); |
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FILE *c_in_file; |
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char c_in_name[500]; |
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SimInfo* simnfo; |
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class DumpReader{ |
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public: |
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DumpReader( char *in_name ); |
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DumpReader(const char *in_name ); |
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~DumpReader(); |
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int getNframes(); |
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void getNextFrame(); |
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void getFrame(SimInfo* the_entry_plug, int whichFrame); |
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void rewind(); |
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void scanFile( void ); |
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void getNextFrame() {} |
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void readFrame(SimInfo* the_simnfo, int whichFrame); |
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#ifdef IS_MPI |
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void anonymousNodeDie( void ); |
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void nodeZeroError( void ); |
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#endif |
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private: |
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char* parseDumpLine(char* line, int atomIndex); |
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char* parseCommentLine(char* line, double &time, double boxMat[9] ); |
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FILE *c_in_file; |
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char c_in_name[500]; |
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SimInfo* simnfo; |
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void readSet( int whichFrame ); |
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char* parseDumpLine(char* readLine, StuntDouble* sd); |
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char* parseCommentLine(char* readLine, SimInfo* entry_plug); |
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FILE *inFile; |
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string inFileName; |
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bool isScanned; |
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vector<fpos_t*> framePos; |
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SimInfo *simnfo; |
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}; |
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