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tim | 
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#include <math.h> | 
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#include "OOPSEMinimizer.hpp" | 
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OOPSEMinimizer::OOPSEMinimizer( SimInfo *theInfo, ForceFields* the_ff , | 
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                                              MinimizerParameterSet * param) | 
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                     :RealIntegrator(theInfo, the_ff), bVerbose(false), bShake(true){ | 
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  tStats = new Thermo(info); | 
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  dumpOut = new DumpWriter(info); | 
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  statOut = new StatWriter(info); | 
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  paramSet = param; | 
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  calcDim(); | 
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   | 
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  curX = getCoor(); | 
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  curG.resize(ndim); | 
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tim | 
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  preMove(); | 
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tim | 
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} | 
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OOPSEMinimizer::~OOPSEMinimizer(){ | 
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  delete tStats; | 
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  delete dumpOut; | 
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  delete statOut; | 
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  delete paramSet; | 
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} | 
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void OOPSEMinimizer::calcEnergyGradient(vector<double>& x, vector<double>& grad, | 
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                                                                    double& energy, int& status){ | 
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  DirectionalAtom* dAtom; | 
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  int index; | 
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  double force[3]; | 
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  double dAtomGrad[6]; | 
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  int shakeStatus; | 
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  setCoor(x); | 
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  if (nConstrained && bShake){ | 
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    shakeStatus = shakeR(); | 
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  } | 
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  calcForce(1, 1); | 
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  if (nConstrained && bShake){ | 
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    shakeStatus |= shakeF(); | 
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  } | 
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  x = getCoor(); | 
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  index = 0; | 
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gezelter | 
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  for(int i = 0; i < integrableObjects.size(); i++){ | 
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tim | 
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 | 
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gezelter | 
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    if (integrableObjects[i]->isDirectional()) { | 
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tim | 
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 | 
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gezelter | 
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      integrableObjects[i]->getGrad(dAtomGrad); | 
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tim | 
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      //gradient is equal to -f | 
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      grad[index++] = -dAtomGrad[0]; | 
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      grad[index++] = -dAtomGrad[1]; | 
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      grad[index++] = -dAtomGrad[2]; | 
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      grad[index++] = -dAtomGrad[3]; | 
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      grad[index++] = -dAtomGrad[4]; | 
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      grad[index++] = -dAtomGrad[5]; | 
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    } | 
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    else{ | 
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gezelter | 
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      integrableObjects[i]->getFrc(force); | 
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tim | 
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 | 
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      grad[index++] = -force[0]; | 
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      grad[index++] = -force[1]; | 
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      grad[index++] = -force[2]; | 
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    } | 
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     | 
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  } | 
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  | 
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  energy = tStats->getPotential(); | 
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  status = shakeStatus; | 
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} | 
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/** | 
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 * | 
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 */ | 
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void OOPSEMinimizer::setCoor(vector<double>& x){ | 
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  DirectionalAtom* dAtom; | 
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  int index; | 
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  double position[3]; | 
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  double eulerAngle[3]; | 
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  index = 0; | 
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gezelter | 
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  for(int i = 0; i < integrableObjects.size(); i++){ | 
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tim | 
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     | 
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    position[0] = x[index++]; | 
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    position[1] = x[index++]; | 
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    position[2] = x[index++]; | 
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gezelter | 
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    integrableObjects[i]->setPos(position); | 
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tim | 
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 | 
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gezelter | 
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    if (integrableObjects[i]->isDirectional()){ | 
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tim | 
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  | 
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      eulerAngle[0] = x[index++]; | 
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      eulerAngle[1] = x[index++]; | 
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      eulerAngle[2] = x[index++]; | 
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gezelter | 
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      integrableObjects[i]->setEuler(eulerAngle[0],  | 
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                                     eulerAngle[1],  | 
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                                     eulerAngle[2]); | 
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tim | 
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    } | 
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  } | 
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} | 
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/** | 
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 * | 
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 */ | 
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vector<double> OOPSEMinimizer::getCoor(){ | 
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  | 
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  DirectionalAtom* dAtom; | 
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  int index; | 
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  double position[3]; | 
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  double eulerAngle[3]; | 
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  vector<double> x; | 
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  x.resize(getDim()); | 
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  index = 0; | 
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   | 
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gezelter | 
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  for(int i = 0; i < integrableObjects.size(); i++){ | 
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    integrableObjects[i]->getPos(position); | 
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tim | 
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 | 
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    x[index++] = position[0]; | 
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    x[index++] = position[1]; | 
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    x[index++] = position[2]; | 
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gezelter | 
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    if (integrableObjects[i]->isDirectional()){ | 
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tim | 
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 | 
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gezelter | 
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      integrableObjects[i]->getEulerAngles(eulerAngle); | 
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       | 
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tim | 
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      x[index++] = eulerAngle[0]; | 
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      x[index++] = eulerAngle[1]; | 
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      x[index++] = eulerAngle[2]; | 
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        | 
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    } | 
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  } | 
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  return x; | 
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} | 
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int OOPSEMinimizer::shakeR(){ | 
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  int i, j; | 
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  int done; | 
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  double posA[3], posB[3]; | 
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  double velA[3], velB[3]; | 
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  double pab[3]; | 
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  double rab[3]; | 
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  int a, b, ax, ay, az, bx, by, bz; | 
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  double rma, rmb; | 
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  double dx, dy, dz; | 
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  double rpab; | 
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  double rabsq, pabsq, rpabsq; | 
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  double diffsq; | 
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  double gab; | 
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  int iteration; | 
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  for (i = 0; i < nAtoms; i++){ | 
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    moving[i] = 0; | 
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    moved[i] = 1; | 
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  } | 
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  iteration = 0; | 
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  done = 0; | 
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  while (!done && (iteration < maxIteration)){ | 
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    done = 1; | 
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    for (i = 0; i < nConstrained; i++){ | 
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      a = constrainedA[i]; | 
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      b = constrainedB[i]; | 
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      ax = (a * 3) + 0; | 
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      ay = (a * 3) + 1; | 
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      az = (a * 3) + 2; | 
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      bx = (b * 3) + 0; | 
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      by = (b * 3) + 1; | 
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      bz = (b * 3) + 2; | 
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      if (moved[a] || moved[b]){ | 
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        atoms[a]->getPos(posA); | 
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        atoms[b]->getPos(posB); | 
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        for (j = 0; j < 3; j++) | 
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          pab[j] = posA[j] - posB[j]; | 
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        //periodic boundary condition | 
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        info->wrapVector(pab); | 
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        pabsq = pab[0] * pab[0] + pab[1] * pab[1] + pab[2] * pab[2]; | 
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        rabsq = constrainedDsqr[i]; | 
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        diffsq = rabsq - pabsq; | 
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        // the original rattle code from alan tidesley | 
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        if (fabs(diffsq) > (tol * rabsq * 2)){ | 
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          rab[0] = oldPos[ax] - oldPos[bx]; | 
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          rab[1] = oldPos[ay] - oldPos[by]; | 
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          rab[2] = oldPos[az] - oldPos[bz]; | 
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          info->wrapVector(rab); | 
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           | 
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          rpab = rab[0] * pab[0] + rab[1] * pab[1] + rab[2] * pab[2]; | 
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          rpabsq = rpab * rpab; | 
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          if (rpabsq < (rabsq * -diffsq)){ | 
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#ifdef IS_MPI | 
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            a = atoms[a]->getGlobalIndex(); | 
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            b = atoms[b]->getGlobalIndex(); | 
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#endif //is_mpi | 
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            //cerr << "Waring: constraint failure" << endl; | 
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            gab = sqrt(rabsq/pabsq); | 
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            rab[0] = (posA[0] - posB[0])*gab; | 
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            rab[1]= (posA[1] - posB[1])*gab; | 
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            rab[2] = (posA[2] - posB[2])*gab; | 
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             | 
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            info->wrapVector(rab); | 
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             | 
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            rpab = rab[0] * pab[0] + rab[1] * pab[1] + rab[2] * pab[2]; | 
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             | 
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          } | 
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          //rma = 1.0 / atoms[a]->getMass(); | 
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          //rmb = 1.0 / atoms[b]->getMass(); | 
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          rma = 1.0; | 
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          rmb =1.0; | 
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          gab = diffsq / (2.0 * (rma + rmb) * rpab); | 
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          dx = rab[0] * gab; | 
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          dy = rab[1] * gab; | 
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          dz = rab[2] * gab; | 
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          posA[0] += rma * dx; | 
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          posA[1] += rma * dy; | 
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          posA[2] += rma * dz; | 
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          atoms[a]->setPos(posA); | 
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          posB[0] -= rmb * dx; | 
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          posB[1] -= rmb * dy; | 
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          posB[2] -= rmb * dz; | 
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          atoms[b]->setPos(posB); | 
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          moving[a] = 1; | 
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          moving[b] = 1; | 
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          done = 0; | 
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        } | 
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      } | 
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    } | 
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    for (i = 0; i < nAtoms; i++){ | 
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      moved[i] = moving[i]; | 
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      moving[i] = 0; | 
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    } | 
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    iteration++; | 
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  } | 
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  if (!done){ | 
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    cerr << "Waring: can not constraint within maxIteration" << endl; | 
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    return -1; | 
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  } | 
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  else | 
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    return 1; | 
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} | 
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//remove constraint force along the bond direction | 
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int OOPSEMinimizer::shakeF(){ | 
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  int i, j; | 
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  int done; | 
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  double posA[3], posB[3]; | 
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  double frcA[3], frcB[3]; | 
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  double rab[3], fpab[3]; | 
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  int a, b, ax, ay, az, bx, by, bz; | 
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  double rma, rmb; | 
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  double rvab; | 
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  double gab; | 
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  double rabsq; | 
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  double rfab; | 
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  int iteration; | 
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  for (i = 0; i < nAtoms; i++){ | 
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    moving[i] = 0; | 
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    moved[i] = 1; | 
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  } | 
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  done = 0; | 
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  iteration = 0; | 
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  while (!done && (iteration < maxIteration)){ | 
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    done = 1; | 
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    for (i = 0; i < nConstrained; i++){ | 
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      a = constrainedA[i]; | 
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      b = constrainedB[i]; | 
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      ax = (a * 3) + 0; | 
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      ay = (a * 3) + 1; | 
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      az = (a * 3) + 2; | 
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      bx = (b * 3) + 0; | 
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      by = (b * 3) + 1; | 
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      bz = (b * 3) + 2; | 
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      if (moved[a] || moved[b]){ | 
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        atoms[a]->getPos(posA); | 
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        atoms[b]->getPos(posB); | 
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| 334 | 
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        for (j = 0; j < 3; j++) | 
| 335 | 
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          rab[j] = posA[j] - posB[j]; | 
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        info->wrapVector(rab); | 
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        atoms[a]->getFrc(frcA); | 
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        atoms[b]->getFrc(frcB); | 
| 341 | 
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| 342 | 
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        //rma = 1.0 / atoms[a]->getMass(); | 
| 343 | 
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        //rmb = 1.0 / atoms[b]->getMass(); | 
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        rma = 1.0; | 
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        rmb = 1.0; | 
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         | 
| 347 | 
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         | 
| 348 | 
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        fpab[0] = frcA[0] * rma - frcB[0] * rmb; | 
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        fpab[1] = frcA[1] * rma - frcB[1] * rmb; | 
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  | 
  | 
        fpab[2] = frcA[2] * rma - frcB[2] * rmb; | 
| 351 | 
  | 
  | 
 | 
| 352 | 
  | 
  | 
 | 
| 353 | 
  | 
  | 
          gab=fpab[0] * fpab[0] + fpab[1] * fpab[1] + fpab[2] * fpab[2]; | 
| 354 | 
  | 
  | 
           | 
| 355 | 
  | 
  | 
          if (gab < 1.0) | 
| 356 | 
  | 
  | 
            gab = 1.0; | 
| 357 | 
  | 
  | 
          | 
| 358 | 
  | 
  | 
          rabsq = rab[0] * rab[0] + rab[1] * rab[1] + rab[2] * rab[2]; | 
| 359 | 
  | 
  | 
          rfab = rab[0] * fpab[0] + rab[1] * fpab[1] + rab[2] * fpab[2]; | 
| 360 | 
  | 
  | 
 | 
| 361 | 
  | 
  | 
          if (fabs(rfab) > sqrt(rabsq*gab) * 0.00001){ | 
| 362 | 
  | 
  | 
 | 
| 363 | 
  | 
  | 
            gab = -rfab /(rabsq*(rma + rmb)); | 
| 364 | 
  | 
  | 
             | 
| 365 | 
  | 
  | 
            frcA[0] = rab[0] * gab; | 
| 366 | 
  | 
  | 
            frcA[1] = rab[1] * gab; | 
| 367 | 
  | 
  | 
            frcA[2] = rab[2] * gab; | 
| 368 | 
  | 
  | 
 | 
| 369 | 
  | 
  | 
            atoms[a]->addFrc(frcA); | 
| 370 | 
  | 
  | 
             | 
| 371 | 
  | 
  | 
 | 
| 372 | 
  | 
  | 
            frcB[0] = -rab[0] * gab; | 
| 373 | 
  | 
  | 
            frcB[1] = -rab[1] * gab; | 
| 374 | 
  | 
  | 
            frcB[2] = -rab[2] * gab; | 
| 375 | 
  | 
  | 
 | 
| 376 | 
  | 
  | 
            atoms[b]->addFrc(frcB); | 
| 377 | 
  | 
  | 
           | 
| 378 | 
  | 
  | 
            moving[a] = 1; | 
| 379 | 
  | 
  | 
            moving[b] = 1; | 
| 380 | 
  | 
  | 
            done = 0; | 
| 381 | 
  | 
  | 
          }              | 
| 382 | 
  | 
  | 
      } | 
| 383 | 
  | 
  | 
    } | 
| 384 | 
  | 
  | 
 | 
| 385 | 
  | 
  | 
    for (i = 0; i < nAtoms; i++){ | 
| 386 | 
  | 
  | 
      moved[i] = moving[i]; | 
| 387 | 
  | 
  | 
      moving[i] = 0; | 
| 388 | 
  | 
  | 
    } | 
| 389 | 
  | 
  | 
 | 
| 390 | 
  | 
  | 
    iteration++; | 
| 391 | 
  | 
  | 
  } | 
| 392 | 
  | 
  | 
 | 
| 393 | 
  | 
  | 
  if (!done){ | 
| 394 | 
  | 
  | 
    cerr << "Waring: can not constraint within maxIteration" << endl; | 
| 395 | 
  | 
  | 
    return -1; | 
| 396 | 
  | 
  | 
  } | 
| 397 | 
  | 
  | 
  else | 
| 398 | 
  | 
  | 
    return 1; | 
| 399 | 
  | 
  | 
} | 
| 400 | 
  | 
  | 
 | 
| 401 | 
  | 
  | 
    //calculate the value of object function | 
| 402 | 
  | 
  | 
void OOPSEMinimizer::calcF(){ | 
| 403 | 
  | 
  | 
  calcEnergyGradient(curX, curG, curF, egEvalStatus); | 
| 404 | 
  | 
  | 
} | 
| 405 | 
  | 
  | 
     | 
| 406 | 
  | 
  | 
void OOPSEMinimizer::calcF(vector<double>& x, double&f, int& status){ | 
| 407 | 
  | 
  | 
  vector<double> tempG; | 
| 408 | 
  | 
  | 
  tempG.resize(x.size()); | 
| 409 | 
  | 
  | 
   | 
| 410 | 
  | 
  | 
  calcEnergyGradient(x, tempG, f, status); | 
| 411 | 
  | 
  | 
} | 
| 412 | 
  | 
  | 
 | 
| 413 | 
  | 
  | 
//calculate the gradient | 
| 414 | 
  | 
  | 
void OOPSEMinimizer::calcG(){ | 
| 415 | 
  | 
  | 
  calcEnergyGradient(curX, curG, curF, egEvalStatus); | 
| 416 | 
  | 
  | 
} | 
| 417 | 
  | 
  | 
 | 
| 418 | 
  | 
  | 
void OOPSEMinimizer::calcG(vector<double>& x, vector<double>& g, double& f, int& status){ | 
| 419 | 
  | 
  | 
  calcEnergyGradient(x, g, f, status); | 
| 420 | 
  | 
  | 
} | 
| 421 | 
  | 
  | 
 | 
| 422 | 
  | 
  | 
void OOPSEMinimizer::calcDim(){ | 
| 423 | 
  | 
  | 
  DirectionalAtom* dAtom; | 
| 424 | 
  | 
  | 
 | 
| 425 | 
  | 
  | 
  ndim = 0; | 
| 426 | 
  | 
  | 
 | 
| 427 | 
gezelter | 
1097 | 
  for(int i = 0; i < integrableObjects.size(); i++){ | 
| 428 | 
tim | 
1064 | 
    ndim += 3; | 
| 429 | 
gezelter | 
1097 | 
    if (integrableObjects[i]->isDirectional()) | 
| 430 | 
tim | 
1064 | 
      ndim += 3;       | 
| 431 | 
  | 
  | 
  } | 
| 432 | 
  | 
  | 
} | 
| 433 | 
  | 
  | 
 | 
| 434 | 
  | 
  | 
void OOPSEMinimizer::setX(vector < double > & x){ | 
| 435 | 
  | 
  | 
 | 
| 436 | 
  | 
  | 
    if (x.size() != ndim && bVerbose){ | 
| 437 | 
  | 
  | 
      //sprintf(painCave.errMsg, | 
| 438 | 
  | 
  | 
      //          "OOPSEMinimizer Error: dimesion of x and curX does not match\n"); | 
| 439 | 
  | 
  | 
     // painCave.isFatal = 1; | 
| 440 | 
  | 
  | 
     // simError(); | 
| 441 | 
  | 
  | 
    } | 
| 442 | 
  | 
  | 
 | 
| 443 | 
  | 
  | 
    curX = x; | 
| 444 | 
  | 
  | 
} | 
| 445 | 
  | 
  | 
 | 
| 446 | 
  | 
  | 
void OOPSEMinimizer::setG(vector < double > & g){ | 
| 447 | 
  | 
  | 
 | 
| 448 | 
  | 
  | 
    if (g.size() != ndim && bVerbose){ | 
| 449 | 
  | 
  | 
      //sprintf(painCave.errMsg, | 
| 450 | 
  | 
  | 
      //          "OOPSEMinimizer Error: dimesion of g and curG does not match\n"); | 
| 451 | 
  | 
  | 
     // painCave.isFatal = 1; | 
| 452 | 
  | 
  | 
      //simError(); | 
| 453 | 
  | 
  | 
    } | 
| 454 | 
  | 
  | 
 | 
| 455 | 
  | 
  | 
    curG = g; | 
| 456 | 
  | 
  | 
} | 
| 457 | 
  | 
  | 
 | 
| 458 | 
  | 
  | 
void OOPSEMinimizer::writeOut(vector<double>& x, double iter){ | 
| 459 | 
  | 
  | 
 | 
| 460 | 
  | 
  | 
  setX(x); | 
| 461 | 
  | 
  | 
 | 
| 462 | 
  | 
  | 
  calcG(); | 
| 463 | 
  | 
  | 
 | 
| 464 | 
  | 
  | 
  dumpOut->writeDump(iter); | 
| 465 | 
  | 
  | 
  statOut->writeStat(iter); | 
| 466 | 
  | 
  | 
} | 
| 467 | 
  | 
  | 
 | 
| 468 | 
  | 
  | 
 | 
| 469 | 
  | 
  | 
void OOPSEMinimizer::printMinimizerInfo(){ | 
| 470 | 
  | 
  | 
  cout << "--------------------------------------------------------------------" << endl; | 
| 471 | 
  | 
  | 
  cout << minimizerName << endl; | 
| 472 | 
  | 
  | 
  cout << "minimization parameter set" << endl; | 
| 473 | 
  | 
  | 
  cout << "function tolerance = " << paramSet->getFTol() << endl; | 
| 474 | 
  | 
  | 
  cout << "gradient tolerance = " << paramSet->getGTol() << endl; | 
| 475 | 
  | 
  | 
  cout << "step tolerance = "<< paramSet->getFTol() << endl; | 
| 476 | 
  | 
  | 
  cout << "absolute gradient tolerance = " << endl; | 
| 477 | 
  | 
  | 
  cout << "max iteration = " << paramSet->getMaxIteration() << endl; | 
| 478 | 
  | 
  | 
  cout << "max line search iteration = " << paramSet->getLineSearchMaxIteration() <<endl; | 
| 479 | 
  | 
  | 
  cout << "shake algorithm = " << bShake << endl; | 
| 480 | 
  | 
  | 
  cout << "--------------------------------------------------------------------" << endl; | 
| 481 | 
  | 
  | 
 | 
| 482 | 
  | 
  | 
} | 
| 483 | 
  | 
  | 
 | 
| 484 | 
  | 
  | 
/** | 
| 485 | 
  | 
  | 
 * In thoery, we need to find the minimum along the search direction | 
| 486 | 
  | 
  | 
 * However, function evaluation is too expensive. I | 
| 487 | 
  | 
  | 
 * At the very begining of the problem, we check the search direction and make sure | 
| 488 | 
  | 
  | 
 * it is a descent direction | 
| 489 | 
  | 
  | 
 * we will compare the energy of two end points, | 
| 490 | 
  | 
  | 
 * if the right end point has lower energy, we just take it | 
| 491 | 
  | 
  | 
 * | 
| 492 | 
  | 
  | 
 * | 
| 493 | 
  | 
  | 
 * | 
| 494 | 
  | 
  | 
 */ | 
| 495 | 
  | 
  | 
 | 
| 496 | 
  | 
  | 
int OOPSEMinimizer::doLineSearch(vector<double>& direction, double stepSize){ | 
| 497 | 
  | 
  | 
  vector<double> xa; | 
| 498 | 
  | 
  | 
  vector<double> xb; | 
| 499 | 
  | 
  | 
  vector<double> xc; | 
| 500 | 
  | 
  | 
  vector<double> ga; | 
| 501 | 
  | 
  | 
  vector<double> gb; | 
| 502 | 
  | 
  | 
  vector<double> gc; | 
| 503 | 
  | 
  | 
  double fa; | 
| 504 | 
  | 
  | 
  double fb; | 
| 505 | 
  | 
  | 
  double fc; | 
| 506 | 
  | 
  | 
  double a; | 
| 507 | 
  | 
  | 
  double b; | 
| 508 | 
  | 
  | 
  double c; | 
| 509 | 
  | 
  | 
  int status; | 
| 510 | 
  | 
  | 
  double initSlope; | 
| 511 | 
  | 
  | 
  double slopeA; | 
| 512 | 
  | 
  | 
  double slopeB; | 
| 513 | 
  | 
  | 
  double slopeC; | 
| 514 | 
  | 
  | 
  bool foundLower; | 
| 515 | 
  | 
  | 
  int iter; | 
| 516 | 
  | 
  | 
  int maxLSIter; | 
| 517 | 
  | 
  | 
  double mu; | 
| 518 | 
  | 
  | 
  double eta; | 
| 519 | 
  | 
  | 
  double ftol;   | 
| 520 | 
tim | 
1074 | 
  double lsTol; | 
| 521 | 
tim | 
1064 | 
 | 
| 522 | 
  | 
  | 
  xa.resize(ndim); | 
| 523 | 
  | 
  | 
  xb.resize(ndim); | 
| 524 | 
  | 
  | 
  xc.resize(ndim); | 
| 525 | 
  | 
  | 
 | 
| 526 | 
  | 
  | 
  ga.resize(ndim); | 
| 527 | 
  | 
  | 
  gb.resize(ndim); | 
| 528 | 
  | 
  | 
  gc.resize(ndim); | 
| 529 | 
  | 
  | 
 | 
| 530 | 
  | 
  | 
  a = 0.0; | 
| 531 | 
  | 
  | 
  fa =  curF;     | 
| 532 | 
  | 
  | 
  xa = curX; | 
| 533 | 
  | 
  | 
  ga = curG; | 
| 534 | 
  | 
  | 
  c = a + stepSize;  | 
| 535 | 
  | 
  | 
  ftol = paramSet->getFTol(); | 
| 536 | 
tim | 
1074 | 
  lsTol = paramSet->getLineSearchTol(); | 
| 537 | 
tim | 
1064 | 
         | 
| 538 | 
  | 
  | 
  //calculate the derivative at a = 0  | 
| 539 | 
  | 
  | 
  for (size_t i = 0; i < ndim; i++) | 
| 540 | 
  | 
  | 
    slopeA += curG[i]*direction[i]; | 
| 541 | 
  | 
  | 
 | 
| 542 | 
  | 
  | 
  initSlope = slopeA; | 
| 543 | 
  | 
  | 
   | 
| 544 | 
  | 
  | 
  // if  going uphill, use negative gradient as searching direction  | 
| 545 | 
  | 
  | 
  if (slopeA > 0) { | 
| 546 | 
  | 
  | 
 | 
| 547 | 
  | 
  | 
    if (bVerbose){ | 
| 548 | 
  | 
  | 
      cout << "LineSearch Warning: initial searching direction is not a descent searching direction, " | 
| 549 | 
  | 
  | 
             << " use negative gradient instead. Therefore, finding a smaller vaule of function " | 
| 550 | 
  | 
  | 
             << " is guaranteed" | 
| 551 | 
  | 
  | 
             << endl; | 
| 552 | 
  | 
  | 
    }     | 
| 553 | 
  | 
  | 
     | 
| 554 | 
  | 
  | 
    for (size_t i = 0; i < ndim; i++) | 
| 555 | 
  | 
  | 
      direction[i] = -curG[i];     | 
| 556 | 
  | 
  | 
     | 
| 557 | 
  | 
  | 
    for (size_t i = 0; i < ndim; i++) | 
| 558 | 
  | 
  | 
      slopeA += curG[i]*direction[i]; | 
| 559 | 
  | 
  | 
     | 
| 560 | 
  | 
  | 
    initSlope = slopeA; | 
| 561 | 
  | 
  | 
  } | 
| 562 | 
  | 
  | 
     | 
| 563 | 
  | 
  | 
  // Take a trial step | 
| 564 | 
  | 
  | 
  for(size_t i = 0; i < ndim; i++) | 
| 565 | 
  | 
  | 
    xc[i] = curX[i] + direction[i] * c;       | 
| 566 | 
  | 
  | 
 | 
| 567 | 
  | 
  | 
  calcG(xc, gc, fc, status); | 
| 568 | 
  | 
  | 
 | 
| 569 | 
  | 
  | 
  if (status < 0){ | 
| 570 | 
  | 
  | 
    if (bVerbose) | 
| 571 | 
  | 
  | 
      cerr << "Function Evaluation Error" << endl; | 
| 572 | 
  | 
  | 
  } | 
| 573 | 
  | 
  | 
 | 
| 574 | 
  | 
  | 
  //calculate the derivative at c | 
| 575 | 
  | 
  | 
  slopeC = 0; | 
| 576 | 
  | 
  | 
  for (size_t i = 0; i < ndim; i++) | 
| 577 | 
  | 
  | 
    slopeC += gc[i]*direction[i]; | 
| 578 | 
  | 
  | 
 | 
| 579 | 
  | 
  | 
  // found a lower point | 
| 580 | 
  | 
  | 
  if (fc < fa) { | 
| 581 | 
  | 
  | 
    curX = xc; | 
| 582 | 
  | 
  | 
    curG = gc; | 
| 583 | 
  | 
  | 
    curF = fc; | 
| 584 | 
  | 
  | 
    return LS_SUCCEED; | 
| 585 | 
  | 
  | 
  } | 
| 586 | 
  | 
  | 
  else { | 
| 587 | 
  | 
  | 
 | 
| 588 | 
  | 
  | 
    if (slopeC > 0) | 
| 589 | 
  | 
  | 
    stepSize *= 0.618034; | 
| 590 | 
  | 
  | 
  }     | 
| 591 | 
  | 
  | 
 | 
| 592 | 
  | 
  | 
  maxLSIter = paramSet->getLineSearchMaxIteration(); | 
| 593 | 
  | 
  | 
    | 
| 594 | 
  | 
  | 
  iter = 0; | 
| 595 | 
  | 
  | 
   | 
| 596 | 
  | 
  | 
  do { | 
| 597 | 
  | 
  | 
    // Select a new trial point. | 
| 598 | 
  | 
  | 
    // If the derivatives at points a & c have different sign we use cubic interpolate     | 
| 599 | 
  | 
  | 
    //if (slopeC > 0){      | 
| 600 | 
  | 
  | 
      eta = 3 *(fa -fc) /(c - a) + slopeA + slopeC; | 
| 601 | 
  | 
  | 
      mu = sqrt(eta * eta - slopeA * slopeC);       | 
| 602 | 
  | 
  | 
      b = a + (c - a) * (1 - (slopeC + mu - eta) /(slopeC - slopeA + 2 * mu));        | 
| 603 | 
tim | 
1074 | 
 | 
| 604 | 
  | 
  | 
      if (b < lsTol){ | 
| 605 | 
  | 
  | 
        if (bVerbose) | 
| 606 | 
  | 
  | 
          cout << "stepSize is less than line search tolerance" << endl; | 
| 607 | 
  | 
  | 
        break;         | 
| 608 | 
  | 
  | 
      } | 
| 609 | 
tim | 
1064 | 
    //} | 
| 610 | 
  | 
  | 
 | 
| 611 | 
  | 
  | 
    // Take a trial step to this new point - new coords in xb  | 
| 612 | 
  | 
  | 
    for(size_t i = 0; i < ndim; i++) | 
| 613 | 
  | 
  | 
      xb[i] = curX[i] + direction[i] * b;       | 
| 614 | 
  | 
  | 
 | 
| 615 | 
  | 
  | 
    //function evaluation | 
| 616 | 
  | 
  | 
    calcG(xb, gb, fb, status); | 
| 617 | 
  | 
  | 
 | 
| 618 | 
  | 
  | 
    if (status < 0){ | 
| 619 | 
  | 
  | 
      if (bVerbose) | 
| 620 | 
  | 
  | 
        cerr << "Function Evaluation Error" << endl; | 
| 621 | 
  | 
  | 
    } | 
| 622 | 
  | 
  | 
 | 
| 623 | 
  | 
  | 
  //calculate the derivative at c | 
| 624 | 
  | 
  | 
    slopeB = 0; | 
| 625 | 
  | 
  | 
    for (size_t i = 0; i < ndim; i++) | 
| 626 | 
  | 
  | 
      slopeB += gb[i]*direction[i]; | 
| 627 | 
  | 
  | 
 | 
| 628 | 
  | 
  | 
    //Amijo Rule to stop the line search  | 
| 629 | 
  | 
  | 
    if (fb <= curF +  initSlope * ftol * b) { | 
| 630 | 
  | 
  | 
      curF = fb; | 
| 631 | 
  | 
  | 
      curX = xb; | 
| 632 | 
  | 
  | 
      curG = gb; | 
| 633 | 
  | 
  | 
      return LS_SUCCEED; | 
| 634 | 
  | 
  | 
     } | 
| 635 | 
  | 
  | 
  | 
| 636 | 
  | 
  | 
    if (slopeB <0 &&  fb < fa) { | 
| 637 | 
  | 
  | 
      //replace a by b | 
| 638 | 
  | 
  | 
      fa = fb; | 
| 639 | 
  | 
  | 
      a = b; | 
| 640 | 
  | 
  | 
      slopeA = slopeB; | 
| 641 | 
  | 
  | 
 | 
| 642 | 
  | 
  | 
      // swap coord  a/b  | 
| 643 | 
  | 
  | 
      std::swap(xa, xb); | 
| 644 | 
  | 
  | 
      std::swap(ga, gb); | 
| 645 | 
  | 
  | 
    } | 
| 646 | 
  | 
  | 
    else { | 
| 647 | 
  | 
  | 
      //replace c by b | 
| 648 | 
  | 
  | 
      fc = fb; | 
| 649 | 
  | 
  | 
      c = b; | 
| 650 | 
  | 
  | 
      slopeC = slopeB; | 
| 651 | 
  | 
  | 
 | 
| 652 | 
  | 
  | 
      // swap coord  b/c  | 
| 653 | 
  | 
  | 
      std::swap(gb, gc); | 
| 654 | 
  | 
  | 
      std::swap(xb, xc); | 
| 655 | 
  | 
  | 
    } | 
| 656 | 
  | 
  | 
      | 
| 657 | 
  | 
  | 
 | 
| 658 | 
  | 
  | 
     iter++; | 
| 659 | 
  | 
  | 
  } while((fb > fa || fb > fc) && (iter < maxLSIter));      | 
| 660 | 
  | 
  | 
   | 
| 661 | 
  | 
  | 
  if(fb < curF || iter >= maxLSIter) { | 
| 662 | 
  | 
  | 
    //could not find a lower value, we might just go uphill.       | 
| 663 | 
  | 
  | 
    return LS_ERROR; | 
| 664 | 
  | 
  | 
  } | 
| 665 | 
  | 
  | 
 | 
| 666 | 
  | 
  | 
  //select the end point | 
| 667 | 
  | 
  | 
 | 
| 668 | 
  | 
  | 
  if (fa <= fc) { | 
| 669 | 
  | 
  | 
    curX = xa; | 
| 670 | 
  | 
  | 
    curG = ga; | 
| 671 | 
  | 
  | 
    curF = fa; | 
| 672 | 
  | 
  | 
  } | 
| 673 | 
  | 
  | 
  else { | 
| 674 | 
  | 
  | 
    curX = xc; | 
| 675 | 
  | 
  | 
    curG = gc; | 
| 676 | 
  | 
  | 
    curF = fc;     | 
| 677 | 
  | 
  | 
  } | 
| 678 | 
  | 
  | 
 | 
| 679 | 
  | 
  | 
  return LS_SUCCEED; | 
| 680 | 
  | 
  | 
     | 
| 681 | 
  | 
  | 
} | 
| 682 | 
  | 
  | 
 | 
| 683 | 
  | 
  | 
void OOPSEMinimizer::minimize(){ | 
| 684 | 
  | 
  | 
 | 
| 685 | 
  | 
  | 
  int convgStatus; | 
| 686 | 
  | 
  | 
  int stepStatus; | 
| 687 | 
  | 
  | 
  int maxIter; | 
| 688 | 
  | 
  | 
  //int resetFrq; | 
| 689 | 
  | 
  | 
  //int nextResetIter; | 
| 690 | 
  | 
  | 
  int writeFrq; | 
| 691 | 
  | 
  | 
  int nextWriteIter; | 
| 692 | 
  | 
  | 
   | 
| 693 | 
  | 
  | 
  if (bVerbose) | 
| 694 | 
  | 
  | 
    printMinimizerInfo(); | 
| 695 | 
  | 
  | 
   | 
| 696 | 
  | 
  | 
  init(); | 
| 697 | 
  | 
  | 
 | 
| 698 | 
  | 
  | 
  //resetFrq = paramSet->getResetFrq(); | 
| 699 | 
  | 
  | 
  //nextResetIter = resetFrq; | 
| 700 | 
  | 
  | 
 | 
| 701 | 
  | 
  | 
  writeFrq = paramSet->getWriteFrq(); | 
| 702 | 
  | 
  | 
  nextWriteIter = writeFrq; | 
| 703 | 
  | 
  | 
   | 
| 704 | 
  | 
  | 
  maxIter = paramSet->getMaxIteration(); | 
| 705 | 
  | 
  | 
   | 
| 706 | 
  | 
  | 
  for (curIter = 1; curIter <= maxIter; curIter++){ | 
| 707 | 
  | 
  | 
 | 
| 708 | 
  | 
  | 
    stepStatus = step(); | 
| 709 | 
  | 
  | 
 | 
| 710 | 
  | 
  | 
    if (stepStatus < 0){ | 
| 711 | 
  | 
  | 
      saveResult(); | 
| 712 | 
  | 
  | 
      minStatus = MIN_LSERROR; | 
| 713 | 
  | 
  | 
      cerr << "OOPSEMinimizer Error: line search error, please try a small stepsize" << endl; | 
| 714 | 
  | 
  | 
      return; | 
| 715 | 
  | 
  | 
    } | 
| 716 | 
  | 
  | 
 | 
| 717 | 
  | 
  | 
    if (curIter == nextWriteIter){ | 
| 718 | 
  | 
  | 
      nextWriteIter += writeFrq; | 
| 719 | 
  | 
  | 
      writeOut(curX, curIter);  | 
| 720 | 
  | 
  | 
    } | 
| 721 | 
  | 
  | 
 | 
| 722 | 
  | 
  | 
    //if (curIter == nextResetIter){ | 
| 723 | 
  | 
  | 
    //  reset(); | 
| 724 | 
  | 
  | 
    //  nextResetIter += resetFrq;       | 
| 725 | 
  | 
  | 
    //} | 
| 726 | 
  | 
  | 
 | 
| 727 | 
  | 
  | 
    convgStatus = checkConvg(); | 
| 728 | 
  | 
  | 
 | 
| 729 | 
  | 
  | 
    if (convgStatus > 0){ | 
| 730 | 
  | 
  | 
      saveResult(); | 
| 731 | 
  | 
  | 
      minStatus = MIN_CONVERGE; | 
| 732 | 
  | 
  | 
      return; | 
| 733 | 
  | 
  | 
    } | 
| 734 | 
  | 
  | 
     | 
| 735 | 
  | 
  | 
    prepareStep(); | 
| 736 | 
  | 
  | 
 | 
| 737 | 
  | 
  | 
  } | 
| 738 | 
  | 
  | 
 | 
| 739 | 
  | 
  | 
 | 
| 740 | 
  | 
  | 
  if (bVerbose) { | 
| 741 | 
  | 
  | 
    cout << "OOPSEMinimizer Warning: " | 
| 742 | 
  | 
  | 
           << minimizerName << " algorithm did not converge within " | 
| 743 | 
  | 
  | 
           << maxIter << " iteration" << endl; | 
| 744 | 
  | 
  | 
  } | 
| 745 | 
  | 
  | 
  minStatus = MIN_MAXITER; | 
| 746 | 
  | 
  | 
  saveResult(); | 
| 747 | 
  | 
  | 
   | 
| 748 | 
  | 
  | 
} |