did a merge by hand from the new-templateless branch to the main trunk. bug Fixes include: * fixed the switching function from ortho to non-ortho box. !!!!! THis was responsible for all of the sudden deaths we saw. * some formating in the string when we write out the extended system state. * added NPT.cpp to the makefile.in
add chi and eta to the comment line of dump file.
added NPT base class. NPTi is up to date. NPTf is not.
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fixed NPTi to now work with constraints.
add conserved quantity to statWriter fix bug of vector wrapping at NPTi
added resetTime to the Global namespace. added ability to reset the integrators in the NVT and NPT family.
Added Z constraint.
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Fixes for get and set routines in Atom and DirectionalAtom
Fixes to NVT. Check them!
Most of the integrator and NVT seem to be working now.
NVT additions
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