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root/group/trunk/OOPSE/libmdtools/Make.dep
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Comparing trunk/OOPSE/libmdtools/Make.dep (file contents):
Revision 1451 by gezelter, Fri Jun 11 19:24:21 2004 UTC vs.
Revision 1452 by tim, Mon Aug 23 15:11:36 2004 UTC

# Line 21 | Line 21 | obj/CallbackFunctor$(O) : ./CallbackFunctor.cpp ./Call
21   ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
22   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
23   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
24 < ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
25 < ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
26 < ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
27 < ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
28 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
29 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
24 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
25 > ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
26 > ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
27 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
28 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
29 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
30 > ./fortranWrapDefines.hpp ./fSimulation.h
31   obj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
32   ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
33   ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
# Line 34 | Line 35 | obj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./
35   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
36   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
37   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
38 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
39 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
40 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
41 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
42 < ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
38 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
39 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
40 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
41 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
42 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
43 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
44 > ./MinimizerParameterSet.hpp ./Utility.hpp
45   obj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
46   ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
47   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 48 | Line 51 | obj/ConstraintAlgorithm$(O) : ./ConstraintAlgorithm.cp
51   ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
52   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
53   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
54 < ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
55 < ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
56 < ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
57 < ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
58 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
59 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ConstraintManager.hpp \
54 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
55 > ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
56 > ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
57 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
58 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
59 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
60 > ./fortranWrapDefines.hpp ./fSimulation.h ./ConstraintManager.hpp \
61   ../libBASS/simError.h
62   obj/ConstraintElement$(O) : ./ConstraintElement.cpp ./ConstraintElement.hpp \
63   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
64   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
65 < ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp
65 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./DirectionalAtom.hpp
66   obj/ConstraintManager$(O) : ./ConstraintManager.cpp ./ConstraintManager.hpp \
67   ./Molecule.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
68   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
# Line 66 | Line 70 | obj/ConstraintManager$(O) : ./ConstraintManager.cpp ./
70   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
71   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
72   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
73 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./ConstraintIterator.hpp \
74 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
75 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
76 < ./fortranWrapDefines.hpp ./fSimulation.h
73 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
74 > ./ConstraintIterator.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
75 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
76 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
77   obj/DirectionalAtom$(O) : ./DirectionalAtom.cpp ./Atom.hpp ./SimState.hpp \
78   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
79   ../libBASS/simError.h ./MatVec3.h
# Line 80 | Line 84 | obj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.hpp
84   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
85   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
86   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
87 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
88 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
89 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
90 < ./fortranWrappers.hpp
87 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
88 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
89 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
90 > ../libBASS/simError.h ./fortranWrappers.hpp
91   obj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
92   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
93   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 91 | Line 95 | obj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp
95   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
96   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
97   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
98 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
99 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
100 < ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
101 < ../libBASS/simError.h
98 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
99 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
100 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
101 > ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
102   obj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
103   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
104   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 102 | Line 106 | obj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp
106   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
107   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
108   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
109 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
110 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
111 < ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
112 < ../libBASS/simError.h
109 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
110 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
111 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
112 > ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
113   obj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
114   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
115   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 113 | Line 117 | obj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom
117   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
118   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
119   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
120 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
121 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
122 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
123 < ./fortranWrappers.hpp
124 < obj/Euler3$(O) : ./Euler3.cpp ./Euler3.hpp ./Mat3x3d.hpp ./Quaternion.hpp ./Vector3d.hpp
120 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
121 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
122 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
123 > ../libBASS/simError.h ./fortranWrappers.hpp
124 > obj/Euler3$(O) : ./Euler3.cpp ./Euler3.hpp ./Mat3x3d.hpp ./Quaternion.hpp ./Vector4d.hpp \
125 > ./Vector3d.hpp
126   obj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
127   obj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
128   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
# Line 126 | Line 131 | obj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/sim
131   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
132   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
133   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
134 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
135 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
136 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
134 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
135 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
136 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
137 > ./fortranWrappers.hpp
138   obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \
139   ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
140   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
# Line 137 | Line 143 | obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./conf
143   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
144   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
145   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
146 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
147 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h ./fForceField.h
146 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
147 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
148 > ./fSimulation.h ./fForceField.h
149   obj/GenericData$(O) : ./GenericData.cpp ./GenericData.hpp
150   obj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
151   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
# Line 150 | Line 157 | obj/InitializeFromFile$(O) : ./InitializeFromFile.cpp
157   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
158   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
159   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
160 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
161 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
162 < ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
163 < ../libBASS/simError.h
160 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
161 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
162 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
163 > ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
164   obj/Integrator$(O) : ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
165   ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
166   ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
167   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
168   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
169 < ./SimState.hpp ./BaseVisitor.hpp ./Roll.hpp ./Vector3d.hpp ./Integrator.hpp \
169 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./Roll.hpp ./Integrator.hpp \
170   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
171   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
172   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
# Line 167 | Line 174 | obj/Integrator$(O) : ./Integrator.cpp ./Rattle.hpp ./S
174   ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
175   ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
176   ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
177 < ../libBASS/simError.h
177 > ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
178   obj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
179   ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
180   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 175 | Line 182 | obj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp
182   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
183   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
184   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
185 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
186 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
187 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
188 < ./fortranWrappers.hpp
185 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
186 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
187 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
188 > ../libBASS/simError.h ./fortranWrappers.hpp
189   obj/Mat3x3d$(O) : ./Mat3x3d.cpp ./Mat3x3d.hpp ./Vector3d.hpp ./Quaternion.hpp \
190 < ./Euler3.hpp
190 > ./Vector4d.hpp ./Euler3.hpp
191   obj/mdProfile$(O) : ./mdProfile.cpp ./config.h ../libBASS/simError.h ./mdProfile.hpp
192   obj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
193   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
# Line 188 | Line 195 | obj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Ato
195   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
196   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
197   ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
198 < ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp \
198 > ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
199   ../libBASS/simError.h
200   obj/mpiSimulation$(O) : ./mpiSimulation.cpp
201   obj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
# Line 197 | Line 204 | obj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./St
204   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
205   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
206   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
207 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
208 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
209 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
210 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
211 < ./ZConsWriter.hpp ../libBASS/simError.h
207 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
208 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
209 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
210 > ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
211 > ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
212 > ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
213   obj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
214   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
215   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
# Line 209 | Line 217 | obj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./Sim
217   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
218   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
219   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
220 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
221 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
222 < ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
223 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
224 < ./ZConsWriter.hpp ../libBASS/simError.h
220 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
221 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
222 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
223 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp \
224 > ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp \
225 > ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
226   obj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
227   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
228   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
229   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
230   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
231   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
232 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
233 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
234 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
235 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
236 < ./ZConsWriter.hpp ../libBASS/simError.h
232 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
233 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
234 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
235 > ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
236 > ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
237 > ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
238   obj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
239   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
240   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
# Line 232 | Line 242 | obj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp .
242   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
243   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
244   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
245 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
246 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
247 < ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
248 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
249 < ./ZConsWriter.hpp ../libBASS/simError.h
245 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
246 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
247 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
248 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp \
249 > ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp \
250 > ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
251   obj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
252   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
253   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
254   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
255   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
256   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
257 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
258 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
259 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
260 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
261 < ./ZConsWriter.hpp ../libBASS/simError.h
257 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
258 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
259 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
260 > ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
261 > ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
262 > ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
263   obj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp \
264   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
265   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
# Line 255 | Line 267 | obj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEM
267   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
268   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
269   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
270 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
271 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
272 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
273 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
274 < ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./ShakeMin.hpp \
275 < ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
276 < ./ConstraintIterator.hpp
270 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
271 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
272 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
273 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
274 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
275 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
276 > ./MinimizerParameterSet.hpp ./ShakeMin.hpp ./ConstraintAlgorithm.hpp \
277 > ./CallbackFunctor.hpp ./TypeInfo.hpp
278   obj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
279   ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
280   ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
# Line 269 | Line 282 | obj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisit
282   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
283   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
284   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
285 < ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
286 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
287 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
285 > ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp ./Exclude.hpp \
286 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
287 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
288   obj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
289   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
290   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
# Line 279 | Line 292 | obj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integ
292   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
293   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
294   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
295 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
296 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
297 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
298 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
299 < ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
295 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
296 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
297 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
298 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
299 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
300 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
301 > ./MinimizerParameterSet.hpp ./Utility.hpp
302   obj/Quaternion$(O) : ./Quaternion.cpp ./Euler3.hpp ./Vector3d.hpp ./Mat3x3d.hpp \
303 < ./Quaternion.hpp
303 > ./Quaternion.hpp ./Vector4d.hpp
304   obj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
305   obj/Rattle$(O) : ./Rattle.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
306   ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
307   ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
308   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
309   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
310 < ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
311 < ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
312 < ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
313 < ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
314 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
315 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./MatVec3.h
310 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
311 > ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
312 > ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
313 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
314 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
315 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
316 > ./fortranWrapDefines.hpp ./fSimulation.h ./MatVec3.h
317   obj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
318   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
319   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 305 | Line 321 | obj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp
321   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
322   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
323   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
324 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
325 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
326 < ./fSimulation.h ../libBASS/simError.h
324 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
325 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
326 > ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h
327   obj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
328   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
329   ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp \
# Line 335 | Line 351 | obj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimiz
351   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
352   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
353   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
354 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
355 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
356 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
357 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
358 < ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
354 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
355 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
356 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
357 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
358 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
359 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
360 > ./MinimizerParameterSet.hpp ./Utility.hpp
361   obj/Shake$(O) : ./Shake.cpp ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp \
362   ./TypeInfo.hpp ./ConstraintIterator.hpp ./ConstraintPair.hpp \
363   ./ConstraintElement.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
364   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
365 < ./GenericData.hpp ./Atom.hpp ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
366 < ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
365 > ./GenericData.hpp ./Atom.hpp ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp \
366 > ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
367 > ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
368 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
369 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
370 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
371 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h \
372 > ./MatVec3.h
373 > obj/ShakeMin$(O) : ./ShakeMin.cpp ./ConstraintElement.hpp ./RigidBody.hpp \
374 > ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
375 > ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
376 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./ShakeMin.hpp \
377 > ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
378 > ./ConstraintIterator.hpp ./ConstraintPair.hpp ./SimInfo.hpp ./Molecule.hpp \
379 > ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
380   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
381   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
382   ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
383   ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
384 < ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h ./MatVec3.h
354 < obj/ShakeMin$(O) : ./ShakeMin.cpp ./ConstraintElement.hpp ./RigidBody.hpp \
355 < ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
356 < ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
357 < ./SimState.hpp ./BaseVisitor.hpp ./ShakeMin.hpp ./ConstraintAlgorithm.hpp \
358 < ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
359 < ./ConstraintPair.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
360 < ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
361 < ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
362 < ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
363 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
364 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
384 > ./fortranWrapDefines.hpp ./fSimulation.h
385   obj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.hpp ./SimState.hpp \
386   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./RigidBody.hpp \
387   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 369 | Line 389 | obj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.h
389   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
390   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
391   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
392 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
393 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
394 < ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h ../libBASS/simError.h \
395 < ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h ./MatVec3.h \
396 < ./ConstraintManager.hpp ./ConstraintIterator.hpp
392 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
393 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
394 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h \
395 > ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h \
396 > ./MatVec3.h ./ConstraintManager.hpp ./ConstraintIterator.hpp
397   obj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \
398   ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
399   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
# Line 384 | Line 404 | obj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../li
404   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
405   ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
406   ./AbstractClasses.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
407 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ./Restraints.hpp \
408 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
409 < ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp \
410 < ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
411 < ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp ./Roll.hpp \
412 < ./Vector3d.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h \
413 < ./NVT.cpp ../libBASS/simError.h ./NPTf.cpp ./MatVec3.h ../libBASS/simError.h \
414 < ./NPT.cpp ../libBASS/simError.h ./NPTi.cpp ../libBASS/simError.h ./NPTxyz.cpp \
415 < ../libBASS/simError.h ./ZConstraint.cpp ../libBASS/simError.h \
416 < ../libBASS/parse_me.h ../libBASS/simError.h ./OOPSEMinimizer.hpp \
417 < ./MinimizerParameterSet.hpp ./ConstraintManager.hpp
407 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
408 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
409 > ./fForceField.h ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp \
410 > ./ConstraintIterator.hpp ./AllIntegrator.hpp ./Integrator.cpp ./Rattle.hpp \
411 > ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
412 > ./Roll.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp \
413 > ./Mat4x4d.hpp ../libBASS/simError.h ./NVT.cpp ../libBASS/simError.h ./NPTf.cpp \
414 > ./MatVec3.h ../libBASS/simError.h ./NPT.cpp ../libBASS/simError.h ./NPTi.cpp \
415 > ../libBASS/simError.h ./NPTxyz.cpp ../libBASS/simError.h ./ZConstraint.cpp \
416 > ../libBASS/simError.h ./SQSIntegrator.cpp ./Mat3x3d.hpp ../libBASS/parse_me.h \
417 > ../libBASS/simError.h ./OOPSEMinimizer.hpp ./MinimizerParameterSet.hpp \
418 > ./ConstraintManager.hpp
419   obj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp
420   obj/SkipList$(O) : ./SkipList.cpp ./SkipList.hpp
421   obj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
# Line 404 | Line 425 | obj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp
425   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
426   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
427   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
428 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
429 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
430 < ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
431 < ../libBASS/simError.h
428 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
429 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
430 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
431 > ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
432   obj/StreamTokenizer$(O) : ./StreamTokenizer.cpp ./StreamTokenizer.hpp
433   obj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
434   ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./RigidBody.hpp \
# Line 420 | Line 441 | obj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp
441   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
442   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
443   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
444 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
445 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
446 < ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp \
447 < ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp \
448 < ../libBASS/simError.h ./MatVec3.h
444 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
445 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
446 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp \
447 > ./ConstraintIterator.hpp ./Integrator.hpp ./ForceFields.hpp ./fForceField.h \
448 > ./ReadWrite.hpp ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
449 > ../libBASS/simError.h ./MatVec3.h ./ConstraintManager.hpp ./Mat3x3d.hpp
450   obj/Torsion$(O) : ./Torsion.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
451   ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
452   obj/TorsionExtensions$(O) : ./TorsionExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
# Line 439 | Line 461 | obj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.h
461   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
462   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
463   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
464 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
465 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
466 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
467 < ./fortranWrappers.hpp
464 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
465 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
466 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
467 > ../libBASS/simError.h ./fortranWrappers.hpp
468   obj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
469   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
470   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
# Line 450 | Line 472 | obj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.
472   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
473   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
474   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
475 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
476 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
477 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
478 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
479 < ./ZConsWriter.hpp ../libBASS/simError.h
475 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
476 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
477 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
478 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
479 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
480 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
481 > ../libBASS/simError.h
482   obj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \
483   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp \
484   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
485   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
486   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
487   ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
488 < ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp \
489 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
488 > ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
489 > ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
490   ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
491   ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
492 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
492 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
493 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
494   ../libBASS/simError.h
495   obj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisitor.hpp ./BaseVisitor.hpp \
496   ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
# Line 474 | Line 499 | obj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisit
499   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
500   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
501   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
502 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
503 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
504 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
505 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
506 < ./ZConsWriter.hpp
502 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
503 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
504 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
505 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
506 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
507 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp
508   obj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \
509   ../libBASS/simError.h
510   MPIobj/mpiForceField$(O) : ./mpiForceField.c
# Line 503 | Line 529 | MPIobj/CallbackFunctor$(O) : ./CallbackFunctor.cpp ./C
529   ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
530   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
531   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
532 < ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
533 < ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
534 < ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
535 < ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
536 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
537 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
532 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
533 > ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
534 > ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
535 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
536 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
537 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
538 > ./fortranWrapDefines.hpp ./fSimulation.h
539   MPIobj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
540   ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
541   ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
# Line 516 | Line 543 | MPIobj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp
543   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
544   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
545   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
546 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
547 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
548 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
549 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
550 < ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
546 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
547 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
548 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
549 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
550 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
551 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
552 > ./MinimizerParameterSet.hpp ./Utility.hpp
553   MPIobj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
554   ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
555   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 530 | Line 559 | MPIobj/ConstraintAlgorithm$(O) : ./ConstraintAlgorithm
559   ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
560   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
561   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
562 < ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
563 < ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
564 < ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
565 < ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
566 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
567 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ConstraintManager.hpp \
562 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
563 > ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
564 > ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
565 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
566 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
567 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
568 > ./fortranWrapDefines.hpp ./fSimulation.h ./ConstraintManager.hpp \
569   ../libBASS/simError.h
570   MPIobj/ConstraintElement$(O) : ./ConstraintElement.cpp ./ConstraintElement.hpp \
571   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
572   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
573 < ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp
573 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./DirectionalAtom.hpp
574   MPIobj/ConstraintManager$(O) : ./ConstraintManager.cpp ./ConstraintManager.hpp \
575   ./Molecule.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
576   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
# Line 548 | Line 578 | MPIobj/ConstraintManager$(O) : ./ConstraintManager.cpp
578   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
579   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
580   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
581 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./ConstraintIterator.hpp \
582 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
583 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
584 < ./fortranWrapDefines.hpp ./fSimulation.h
581 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
582 > ./ConstraintIterator.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
583 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
584 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
585   MPIobj/DirectionalAtom$(O) : ./DirectionalAtom.cpp ./Atom.hpp ./SimState.hpp \
586   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
587   ../libBASS/simError.h ./MatVec3.h
# Line 562 | Line 592 | MPIobj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.
592   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
593   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
594   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
595 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
596 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
597 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
598 < ./fortranWrappers.hpp
595 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
596 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
597 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
598 > ../libBASS/simError.h ./fortranWrappers.hpp
599   MPIobj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
600   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
601   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 573 | Line 603 | MPIobj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.h
603   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
604   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
605   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
606 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
607 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
608 < ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
609 < ../libBASS/simError.h
606 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
607 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
608 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
609 > ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
610   MPIobj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
611   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
612   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 584 | Line 614 | MPIobj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.h
614   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
615   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
616   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
617 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
618 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
619 < ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
620 < ../libBASS/simError.h
617 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
618 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
619 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
620 > ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
621   MPIobj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
622   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
623   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 595 | Line 625 | MPIobj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./A
625   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
626   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
627   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
628 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
629 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
630 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
631 < ./fortranWrappers.hpp
632 < MPIobj/Euler3$(O) : ./Euler3.cpp ./Euler3.hpp ./Mat3x3d.hpp ./Quaternion.hpp ./Vector3d.hpp
628 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
629 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
630 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
631 > ../libBASS/simError.h ./fortranWrappers.hpp
632 > MPIobj/Euler3$(O) : ./Euler3.cpp ./Euler3.hpp ./Mat3x3d.hpp ./Quaternion.hpp ./Vector4d.hpp \
633 > ./Vector3d.hpp
634   MPIobj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
635   MPIobj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
636   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
# Line 608 | Line 639 | MPIobj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/
639   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
640   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
641   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
642 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
643 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
644 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
642 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
643 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
644 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
645 > ./fortranWrappers.hpp
646   MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \
647   ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
648   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
# Line 619 | Line 651 | MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./c
651   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
652   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
653   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
654 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
655 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h ./fForceField.h
654 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
655 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
656 > ./fSimulation.h ./fForceField.h
657   MPIobj/GenericData$(O) : ./GenericData.cpp ./GenericData.hpp
658   MPIobj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
659   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
# Line 632 | Line 665 | MPIobj/InitializeFromFile$(O) : ./InitializeFromFile.c
665   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
666   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
667   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
668 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
669 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
670 < ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
671 < ../libBASS/simError.h
668 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
669 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
670 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
671 > ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
672   MPIobj/Integrator$(O) : ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
673   ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
674   ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
675   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
676   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
677 < ./SimState.hpp ./BaseVisitor.hpp ./Roll.hpp ./Vector3d.hpp ./Integrator.hpp \
677 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./Roll.hpp ./Integrator.hpp \
678   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
679   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
680   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
# Line 649 | Line 682 | MPIobj/Integrator$(O) : ./Integrator.cpp ./Rattle.hpp
682   ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
683   ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
684   ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
685 < ../libBASS/simError.h
685 > ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
686   MPIobj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
687   ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
688   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 657 | Line 690 | MPIobj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.
690   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
691   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
692   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
693 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
694 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
695 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
696 < ./fortranWrappers.hpp
693 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
694 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
695 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
696 > ../libBASS/simError.h ./fortranWrappers.hpp
697   MPIobj/Mat3x3d$(O) : ./Mat3x3d.cpp ./Mat3x3d.hpp ./Vector3d.hpp ./Quaternion.hpp \
698 < ./Euler3.hpp
698 > ./Vector4d.hpp ./Euler3.hpp
699   MPIobj/mdProfile$(O) : ./mdProfile.cpp ./config.h ../libBASS/simError.h ./mdProfile.hpp
700   MPIobj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
701   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
# Line 670 | Line 703 | MPIobj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./
703   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
704   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
705   ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
706 < ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp \
706 > ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
707   ../libBASS/simError.h
708   MPIobj/mpiSimulation$(O) : ./mpiSimulation.cpp
709   MPIobj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
# Line 679 | Line 712 | MPIobj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp .
712   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
713   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
714   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
715 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
716 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
717 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
718 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
719 < ./ZConsWriter.hpp ../libBASS/simError.h
715 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
716 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
717 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
718 > ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
719 > ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
720 > ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
721   MPIobj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
722   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
723   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
# Line 691 | Line 725 | MPIobj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./
725   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
726   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
727   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
728 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
729 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
730 < ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
731 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
732 < ./ZConsWriter.hpp ../libBASS/simError.h
728 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
729 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
730 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
731 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp \
732 > ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp \
733 > ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
734   MPIobj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
735   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
736   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
737   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
738   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
739   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
740 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
741 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
742 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
743 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
744 < ./ZConsWriter.hpp ../libBASS/simError.h
740 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
741 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
742 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
743 > ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
744 > ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
745 > ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
746   MPIobj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
747   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
748   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
# Line 714 | Line 750 | MPIobj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hp
750   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
751   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
752   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
753 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
754 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
755 < ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
756 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
757 < ./ZConsWriter.hpp ../libBASS/simError.h
753 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
754 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
755 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
756 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp \
757 > ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp \
758 > ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
759   MPIobj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
760   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
761   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
762   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
763   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
764   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
765 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
766 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
767 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
768 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
769 < ./ZConsWriter.hpp ../libBASS/simError.h
765 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
766 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
767 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
768 > ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
769 > ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
770 > ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
771   MPIobj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp \
772   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
773   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
# Line 737 | Line 775 | MPIobj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOP
775   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
776   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
777   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
778 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
779 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
780 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
781 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
782 < ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./ShakeMin.hpp \
783 < ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
784 < ./ConstraintIterator.hpp
778 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
779 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
780 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
781 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
782 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
783 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
784 > ./MinimizerParameterSet.hpp ./ShakeMin.hpp ./ConstraintAlgorithm.hpp \
785 > ./CallbackFunctor.hpp ./TypeInfo.hpp
786   MPIobj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
787   ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
788   ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
# Line 751 | Line 790 | MPIobj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVi
790   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
791   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
792   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
793 < ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
794 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
795 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
793 > ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp ./Exclude.hpp \
794 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
795 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
796   MPIobj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
797   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
798   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
# Line 761 | Line 800 | MPIobj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./In
800   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
801   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
802   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
803 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
804 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
805 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
806 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
807 < ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
803 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
804 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
805 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
806 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
807 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
808 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
809 > ./MinimizerParameterSet.hpp ./Utility.hpp
810   MPIobj/Quaternion$(O) : ./Quaternion.cpp ./Euler3.hpp ./Vector3d.hpp ./Mat3x3d.hpp \
811 < ./Quaternion.hpp
811 > ./Quaternion.hpp ./Vector4d.hpp
812   MPIobj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
813   MPIobj/Rattle$(O) : ./Rattle.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
814   ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
815   ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
816   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
817   ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
818 < ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
819 < ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
820 < ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
821 < ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
822 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
823 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./MatVec3.h
818 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
819 > ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
820 > ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
821 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
822 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
823 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
824 > ./fortranWrapDefines.hpp ./fSimulation.h ./MatVec3.h
825   MPIobj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
826   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
827   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 787 | Line 829 | MPIobj/Restraints$(O) : ./Restraints.cpp ./Restraints.
829   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
830   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
831   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
832 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
833 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
834 < ./fSimulation.h ../libBASS/simError.h
832 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
833 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
834 > ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h
835   MPIobj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
836   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
837   ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp \
# Line 817 | Line 859 | MPIobj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMini
859   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
860   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
861   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
862 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
863 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
864 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
865 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
866 < ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
862 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
863 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
864 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
865 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
866 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
867 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
868 > ./MinimizerParameterSet.hpp ./Utility.hpp
869   MPIobj/Shake$(O) : ./Shake.cpp ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp \
870   ./TypeInfo.hpp ./ConstraintIterator.hpp ./ConstraintPair.hpp \
871   ./ConstraintElement.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
872   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
873 < ./GenericData.hpp ./Atom.hpp ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
874 < ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
873 > ./GenericData.hpp ./Atom.hpp ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp \
874 > ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
875 > ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
876 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
877 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
878 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
879 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h \
880 > ./MatVec3.h
881 > MPIobj/ShakeMin$(O) : ./ShakeMin.cpp ./ConstraintElement.hpp ./RigidBody.hpp \
882 > ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
883 > ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
884 > ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./ShakeMin.hpp \
885 > ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
886 > ./ConstraintIterator.hpp ./ConstraintPair.hpp ./SimInfo.hpp ./Molecule.hpp \
887 > ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
888   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
889   ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
890   ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
891   ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
892 < ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h ./MatVec3.h
836 < MPIobj/ShakeMin$(O) : ./ShakeMin.cpp ./ConstraintElement.hpp ./RigidBody.hpp \
837 < ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
838 < ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
839 < ./SimState.hpp ./BaseVisitor.hpp ./ShakeMin.hpp ./ConstraintAlgorithm.hpp \
840 < ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
841 < ./ConstraintPair.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
842 < ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
843 < ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
844 < ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
845 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
846 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
892 > ./fortranWrapDefines.hpp ./fSimulation.h
893   MPIobj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.hpp ./SimState.hpp \
894   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./RigidBody.hpp \
895   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 851 | Line 897 | MPIobj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Ato
897   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
898   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
899   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
900 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
901 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
902 < ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h ../libBASS/simError.h \
903 < ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h ./MatVec3.h \
904 < ./ConstraintManager.hpp ./ConstraintIterator.hpp
900 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
901 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
902 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h \
903 > ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h \
904 > ./MatVec3.h ./ConstraintManager.hpp ./ConstraintIterator.hpp
905   MPIobj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \
906   ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
907   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
# Line 866 | Line 912 | MPIobj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ..
912   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
913   ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
914   ./AbstractClasses.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
915 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ./Restraints.hpp \
916 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
917 < ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp \
918 < ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
919 < ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp ./Roll.hpp \
920 < ./Vector3d.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h \
921 < ./NVT.cpp ../libBASS/simError.h ./NPTf.cpp ./MatVec3.h ../libBASS/simError.h \
922 < ./NPT.cpp ../libBASS/simError.h ./NPTi.cpp ../libBASS/simError.h ./NPTxyz.cpp \
923 < ../libBASS/simError.h ./ZConstraint.cpp ../libBASS/simError.h \
924 < ../libBASS/parse_me.h ../libBASS/simError.h ./OOPSEMinimizer.hpp \
925 < ./MinimizerParameterSet.hpp ./ConstraintManager.hpp
915 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
916 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
917 > ./fForceField.h ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp \
918 > ./ConstraintIterator.hpp ./AllIntegrator.hpp ./Integrator.cpp ./Rattle.hpp \
919 > ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
920 > ./Roll.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp \
921 > ./Mat4x4d.hpp ../libBASS/simError.h ./NVT.cpp ../libBASS/simError.h ./NPTf.cpp \
922 > ./MatVec3.h ../libBASS/simError.h ./NPT.cpp ../libBASS/simError.h ./NPTi.cpp \
923 > ../libBASS/simError.h ./NPTxyz.cpp ../libBASS/simError.h ./ZConstraint.cpp \
924 > ../libBASS/simError.h ./SQSIntegrator.cpp ./Mat3x3d.hpp ../libBASS/parse_me.h \
925 > ../libBASS/simError.h ./OOPSEMinimizer.hpp ./MinimizerParameterSet.hpp \
926 > ./ConstraintManager.hpp
927   MPIobj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp
928   MPIobj/SkipList$(O) : ./SkipList.cpp ./SkipList.hpp
929   MPIobj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
# Line 886 | Line 933 | MPIobj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.h
933   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
934   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
935   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
936 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
937 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
938 < ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
939 < ../libBASS/simError.h
936 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
937 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
938 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
939 > ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
940   MPIobj/StreamTokenizer$(O) : ./StreamTokenizer.cpp ./StreamTokenizer.hpp
941   MPIobj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
942   ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./RigidBody.hpp \
# Line 902 | Line 949 | MPIobj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.h
949   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
950   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
951   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
952 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
953 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
954 < ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp \
955 < ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp \
956 < ../libBASS/simError.h ./MatVec3.h
952 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
953 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
954 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp \
955 > ./ConstraintIterator.hpp ./Integrator.hpp ./ForceFields.hpp ./fForceField.h \
956 > ./ReadWrite.hpp ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
957 > ../libBASS/simError.h ./MatVec3.h ./ConstraintManager.hpp ./Mat3x3d.hpp
958   MPIobj/Torsion$(O) : ./Torsion.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
959   ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
960   MPIobj/TorsionExtensions$(O) : ./TorsionExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
# Line 921 | Line 969 | MPIobj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Ato
969   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
970   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
971   ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
972 < ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
973 < ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
974 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
975 < ./fortranWrappers.hpp
972 > ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
973 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
974 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
975 > ../libBASS/simError.h ./fortranWrappers.hpp
976   MPIobj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
977   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
978   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
# Line 932 | Line 980 | MPIobj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsRead
980   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
981   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
982   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
983 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
984 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
985 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
986 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
987 < ./ZConsWriter.hpp ../libBASS/simError.h
983 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
984 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
985 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
986 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
987 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
988 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
989 > ../libBASS/simError.h
990   MPIobj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \
991   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp \
992   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
993   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
994   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
995   ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
996 < ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp \
997 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
996 > ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
997 > ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
998   ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
999   ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
1000 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
1000 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
1001 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
1002   ../libBASS/simError.h
1003   MPIobj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisitor.hpp ./BaseVisitor.hpp \
1004   ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
# Line 956 | Line 1007 | MPIobj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVi
1007   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
1008   ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
1009   ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
1010 < ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
1011 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
1012 < ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
1013 < ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
1014 < ./ZConsWriter.hpp
1010 > ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
1011 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
1012 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
1013 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
1014 > ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
1015 > ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp
1016   MPIobj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \
1017   ../libBASS/simError.h

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