| 178 |
|
virtual void getVelScaleB( double sc[3], int index ) = 0; |
| 179 |
|
virtual void getPosScale(double pos[3], double COM[3], |
| 180 |
|
int index, double sc[3]) = 0; |
| 181 |
+ |
|
| 182 |
+ |
virtual void calcVelScale( void ) = 0; |
| 183 |
|
|
| 184 |
|
virtual bool chiConverged( void ); |
| 185 |
|
virtual bool etaConverged( void ) = 0; |
| 257 |
|
virtual void getVelScaleB( double sc[3], int index ); |
| 258 |
|
virtual void getPosScale(double pos[3], double COM[3], |
| 259 |
|
int index, double sc[3]); |
| 260 |
+ |
|
| 261 |
+ |
virtual void calcVelScale( void ); |
| 262 |
|
|
| 263 |
|
double eta, oldEta, prevEta; |
| 264 |
+ |
double vScale; |
| 265 |
|
}; |
| 266 |
|
|
| 267 |
|
template<typename T> class NPTf : public T{ |
| 289 |
|
virtual void getPosScale(double pos[3], double COM[3], |
| 290 |
|
int index, double sc[3]); |
| 291 |
|
|
| 292 |
+ |
virtual void calcVelScale( void ); |
| 293 |
+ |
|
| 294 |
|
double eta[3][3]; |
| 295 |
|
double oldEta[3][3]; |
| 296 |
|
double prevEta[3][3]; |
| 297 |
+ |
double vScale[3][3]; |
| 298 |
|
}; |
| 299 |
|
|
| 300 |
|
template<typename T> class NPTxyz : public T{ |
| 322 |
|
virtual void getPosScale(double pos[3], double COM[3], |
| 323 |
|
int index, double sc[3]); |
| 324 |
|
|
| 325 |
+ |
virtual void calcVelScale( void ); |
| 326 |
+ |
|
| 327 |
|
double eta[3][3]; |
| 328 |
|
double oldEta[3][3]; |
| 329 |
|
double prevEta[3][3]; |
| 330 |
+ |
double vScale[3][3]; |
| 331 |
|
}; |
| 332 |
|
|
| 333 |
|
|
| 453 |
|
double* fz; |
| 454 |
|
double* curZPos; |
| 455 |
|
|
| 456 |
< |
|
| 457 |
< |
|
| 456 |
> |
double zconsFixTime; |
| 457 |
> |
double zconsGap; |
| 458 |
> |
bool hasZConsGap; |
| 459 |
> |
vector<double> endFixTime; |
| 460 |
> |
|
| 461 |
|
int whichDirection; //constraint direction |
| 462 |
|
|
| 463 |
|
private: |
| 470 |
|
double calcMovingMolsCOMVel(); |
| 471 |
|
double calcSysCOMVel(); |
| 472 |
|
double calcTotalForce(); |
| 473 |
+ |
void updateZPos(); |
| 474 |
|
|
| 475 |
|
ForceSubtractionPolicy* forcePolicy; //force subtraction policy |
| 476 |
|
friend class ForceSubtractionPolicy; |
| 477 |
|
|
| 478 |
|
}; |
| 479 |
|
|
| 480 |
+ |
/* |
| 481 |
+ |
//Steered Molecular Dynamics |
| 482 |
+ |
template<typename T> class SMD : public T{ |
| 483 |
+ |
public: |
| 484 |
+ |
SMD( SimInfo *theInfo, ForceFields* the_ff); |
| 485 |
+ |
~SMD(); |
| 486 |
+ |
|
| 487 |
+ |
virtual void integrate(); |
| 488 |
+ |
virtual void calcForce( int calcPot, int calcStress ); |
| 489 |
+ |
}; |
| 490 |
+ |
*/ |
| 491 |
|
#endif |