| 13 |
|
#include "Thermo.hpp" |
| 14 |
|
#include "ReadWrite.hpp" |
| 15 |
|
#include "ZConsWriter.hpp" |
| 16 |
+ |
#include "Restraints.hpp" |
| 17 |
|
|
| 18 |
|
using namespace std; |
| 19 |
|
const double kB = 8.31451e-7;// boltzmann constant amu*Ang^2*fs^-2/K |
| 46 |
|
virtual void calcForce( int calcPot, int calcStress ); |
| 47 |
|
virtual void thermalize(); |
| 48 |
|
|
| 49 |
+ |
virtual bool stopIntegrator() {return false;} |
| 50 |
+ |
|
| 51 |
|
virtual void rotationPropagation( StuntDouble* sd, double ji[3] ); |
| 52 |
|
|
| 53 |
|
void checkConstraints( void ); |
| 88 |
|
|
| 89 |
|
typedef Integrator<BaseIntegrator> RealIntegrator; |
| 90 |
|
|
| 91 |
+ |
// ansi instantiation |
| 92 |
+ |
template class Integrator<BaseIntegrator>; |
| 93 |
+ |
|
| 94 |
|
template<typename T> class NVE : public T { |
| 95 |
|
|
| 96 |
|
public: |
| 461 |
|
vector<double> curZPos; |
| 462 |
|
|
| 463 |
|
bool usingSMD; |
| 464 |
+ |
vector<double> prevCantPos; |
| 465 |
|
vector<double> cantPos; |
| 466 |
|
vector<double> cantVel; |
| 467 |
|
|
| 490 |
|
|
| 491 |
|
}; |
| 492 |
|
|
| 486 |
– |
/* |
| 487 |
– |
//Steered Molecular Dynamics |
| 488 |
– |
template<typename T> class SMD : public T{ |
| 489 |
– |
public: |
| 490 |
– |
SMD( SimInfo *theInfo, ForceFields* the_ff); |
| 491 |
– |
~SMD(); |
| 492 |
– |
|
| 493 |
– |
virtual void integrate(); |
| 494 |
– |
virtual void calcForce( int calcPot, int calcStress ); |
| 495 |
– |
}; |
| 496 |
– |
*/ |
| 493 |
|
#endif |